XLOC_042885 (gene) - C. hemisphaerica

Overview
NameXLOC_042885
Unique NameXLOC_042885
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_49:280831..284626+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_042885 ID=XLOC_042885|Name=XLOC_042885|organism=Clytia hemisphaerica|type=gene|length=3796bp|location=Sequence derived from alignment at scaffold_49:280831..284626+ (Clytia hemisphaerica)
GCTGGAGTAGaggaagaaaaatttcaattactTTTTGATCGCTTTCTact
agtttttttttctatgtttgtcAATGAGAGGGAATAAATTTAAGACCGTG
TTTACAGTTAcaacagttttgaaaatttacttAAGGTCCTTCTTATCTAT
ATGGATGTGGAAAATATGCGAGGAGAAAATGTTTGTTTAACCGTTTAGCA
TAACTTTGATAAaacattgacttttttttgccattttgaatAAAAGTTGT
CATTGAATTGAGTACTTCATTTGATTCATTCTTGACATTGAGGTGACACG
GGAAAGAGGAAATCAAATGATACATAGATTTTCGGTGCATGGTTGACGAG
CTATGAAGGAAGACACTAGACAAAGAACGAAGAGTGGAGCCAAACCTGAT
GTTCGCCTTGCTTTGATTGGCGCACCGAAAGTCGGGAAATCAGGTAAATA
GATTTTTTAAGCAGGAACATTGAGAATTCAAAGTTTACAGTCAAATCTTA
AACCAGTTGATATCTAATAGTACAAGATTTCAAAACACCACGATATCGGA
CATTTAAGAGGCAAATTTCGCAGAGAGAATATGATTCGAGTCGGCTAAAA
TTCAGAAGTCCTGGTCATAAAAGATCAACAACGCATCCAatttaaagaaa
tataaaaaaatctttaacctccctagatttttaaaattacTATTCACAAC
ATCTTACACTGTAGGAATATAAAGTTTAACGGTGACGTAATAAAAACATG
GTACACATATACGAAGATCGTCAAAATACAACGTATTGTAATATAAACAC
ATGAAAGGCCATGTTTTCATTGAAAGTCTTTATTTTTGAATCATCGAGGG
TCCTTGTTAGTTGCCATAACATAATACCTCTTCTCGAAACATAGCAAGTT
GAATGGAAAGCCAAGAAAAGCACTCAAGTAATTCCAACGCAACGAATAGT
TTTTGGCANAACGAAGAGTGGAGCCAAACCTGATGTTCGCCTTGCTTTGA
TTGGCGCACCGAAAGTCGGGAAATCAGGTAAATAGATTTTTTAAGCAGGA
ACATTGAGAATTCAAAGTTTACAGTCAAATCTTAAACCAGTTGATATCTA
ATAGTACAAGATTTCAAAACACCACGATATCGGACATTTAAGAGGCAAAT
TTCGCAGAGAGAATATGATTCGAGTCGGCTAAAATTCAGAAGTCCTGGTC
ATAAAAGATCAACAACGCATCCAatttaaagaaatataaaaaaatcttta
acctccctagatttttaaaattacTATTCACAACATCTTACACTGTAGGA
ATATAAAGTTTAACGGTGACGTAATAAAAACATGGTACACATATACGAAG
ATCGTCAAAATACAACGTATTGTAATATAAACACATGAAAGGCCATGTTT
TCATTGAAAGTCTTTATTTTTGAATCATCGAGGGTCCTTGTTAGTTGCCA
TAACATAATACCTCTTCTCGAAACATAGCAAGTTGAATGGAAAGCCAAGA
AAGGCACTCAAGTAATTCCAACGCAACGAATAGTTTTTGGCAGCGTTACT
TGCAATCCATAATAAACGAACATGGAGTGAATTACCTACTGTAAAAGAAA
AGGTTAAAGTTGTAGGGTATCATCAAGGCCTAGCTAACCGTTCTGATAAA
TCAGGCTTATAGGATTCATTGATTAATATTTCCGGGGCATATTCCTTCTC
CctgtcaaaaaatgaaaattttcttttttagcaaTCAGTGTTCGATTTCT
GACGCGAAGATTCATCCACGAATACCAGAGAAGCGTGGAACATACTTATC
GTAGAAACCTGGAGTTTGGAAATGAAGTCATTGAATATGTGTTAAGGGAT
TCATCAGGAACGGTAAGACTTTGATGGAgtaatacacaggttgcaaaatt
aaaattctgaagacaaatcacgcttttactcgaaatttccatgtgcttgt
tacatgacatttatttctgattggttcgaatttattgacactaataaagt
aaTTAACTGTTGTAATTAAAAGTTGTAAAGCAAgcaacatgggaataaaa
tcacgggaactttttcgagtaatcacatgttttgactgcaccgatataat
tttgcaacctgtgtattgaaTATaaatgttttatcaaaataattttctat
cCAATTTTTTGTCGTGTTGAAACTGGAAGTATTTAAGTGACTTCCCACTT
CTGATTTAAAAGAGAATGAGACTTTTATCAAACGATTAAATGAGAGTTAA
AGAACGTTTACAAGCTTCTTAGTAAAACAAATTATGGACACAAAGAAGTC
TGGTAATGAGCATGAGTCAGATTAGAAGATAAAAGAATCTCCGCCCTTGA
ACTTTATGAATCAGAGTGGTTTaggttttttgattttgtatggTTTTGAA
ATGAAGTTAATTTTCAATTACCAAAGACTAGTCtgcacaatagacagctc
caggcttttaggccttgtTTACCTTAGGAGAAGTTTTAcactcgaaacga
aggaagatgaCGTAGCCTACCAAAGACCCGCTAATCCAACATTTTAAATC
CTTTCCTTTTTTCCAGGTCGAGAATAACAATAATTTGATCCACTGGGCGT
CGTGTGTCGCAGTGATTTACTCCATCTCAGACAAGAACAGTTTCAATGTT
GCATCTGCACTCCTCGAAGAAATCAACTTCATTTACAACagtaaaaatta
caaacaaaatggACCAAAAAGTATCGGCCTTATTGGTAACAAGAAAGACT
TAAACCATCTGCGGGAAGTTTCCTTGAGAGAAGCTAAAGAATTGGCGAAT
AAACATGGCGCGAATTTCTGGGAAGTCTCCGCTTCTGATGATTTTCATTC
AACTCATGCACCTTTAAACTCCATGGTTGTTGAAGCttatttgaataatt
tgacATTGAAAACTGTAAAAGGGGGACTGGTTTCTCCTGGATCACATGTG
AAAGGTCTCGATGAAAACATCAGAAACGAATTAATTTCGAATCAATCGAT
TGAAAGCGATGAAGGTGGCTTACAACCATCTACACCATTCAAAATTCCCA
TGAATCCTTTCGACTTTTCAAGCGAGAAACGAAAATCGTTTAAAGATCGC
AAGAAATTAGATTTGAAGTTAAACCAACTAAAAAGTGAAAGTCTAAAGAA
GATCTCAATGGGAAGGACTTCTTTGGATAACGACAACTTTGACTCCAATA
ACAATACAAATAGTAATTCACCAGATACTATGAGTCTGAGCACAGACAAT
GACGAACCAATTCGGACAAGTAGTTGGTCAAAGAAGGACAAAAAACGAAA
GGAGAAATCGAAAGAATCAAAAGAACTGAAGGAActtaaagaaatgaaat
taaCAGAAATGAATGGAGTTGGACACGAAGaaatagaacaaaagaaaagt
aattTACAAAGATGTCACAGTCTCACTGACctcaaaagtttagaaaaagA
ACACCATTGCGAGGGAGTTGATTCAGAAAACAAGGAAGACATTGAACCTC
ACGATGTAGAGNTGAGGGAGTTGATTCAGAGAACAAGGAAGACATTGAAC
CTCACGATGTAGAGGATGACAAACTAACTGATTTGATTTCACCTTCCAGT
AAAATTACCAGCAGTTTCAGCAGGTTGTCTTCATACTCTGCAGGCTCTGG
CGTCCCCATTAAAAGTCCACGACCCCGCAAAGAGCGACGCAAAACCACTG
GCTTGACCATGACTCCCGAACATATAGAAACAGATCTCGCGTCCCCCCGA
AGCCCCGAACCTCCTCGAGAACAATCCAGATTCAAACGAGCCGAAA
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00068771TCONS_00068771Clytia hemisphaericatranscript
TCONS_00068772TCONS_00068772Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00068771-proteinTCONS_00068771-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_49supercontigscaffold_49:280831..284626 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.73	0.43	0.61	0.32	0.72	0.44	0.72	0.65	0.2	0.46	0.23	0.24	8.59	9.3	1.93	3.74	1.24	2.18	15.55	16.66	2.11	2.4	0.97	0.96	1.11	1.48	0	0.04	0.17	0.47