TCONS_00066448 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066448
Unique NameTCONS_00066448
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1788

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066448 ID=TCONS_00066448|Name=TCONS_00066448|organism=Clytia hemisphaerica|type=transcript|length=1788bp
agacTTGCTACCTACCGAATTCCTACCTACCTTCCTAGGTCAGACATTTC
GTCTGGAGCTTTTCGCCAGACCAGACGGTACGGTCAAAATTTCGATTGAA
CAAAATATGGAGAAGGAAGCTGCAACCACAAACTTGTCACCCAGTATTTT
TTTGACAGGTTTTGGAGCCTTTGGTGAGTATAATACAAACCCAAGTTGGC
TGGCTGTCCAGGAAGTTTCAAAGATCTGGCCTAACAAAGGAGAGATACAC
ATTAAAGAAATCCCAGTAGAATATAAATATGTTGAAGAAAATataccaaa
atatttggaaaatataaagCCAAAGATTTCAATCAATGTTGGTGTATCAG
GCCTTGCAGAAGATAAACTTCAATTGGAATATTGTGCTCACTCGTCAGAT
TATGTGCAACCAGATATCGATGGATGTATTGGCCCAGATTGTTCGAAGGA
TGTGTGTTTGACTACAAAGTTCGATCTTGAAAAATTGATTGCTTGTTGTG
CTGGCAGTGCTTTACAAGTAGAAAGATCAGACAACGCGGGAAGGTATTTA
TGCGAATTCATTTACTACACATCAATGAAGACGGACGAATGTCCATCGCT
ATTTGTTCACGTTCCTGTCATCACTGAAGAAATTACATTGGAGAAAATTA
CAAAGACTTTAGAAAGTATTATAAAGGCGTGCATACAACAGGTGTAGAAG
TTGGTTCCACGATAAGTAGTCCGATTTGTAAAATCTATACTTCATGTATA
TAACTTTCTCATGTATGGTTAAATTATGTAATTTCCGCCATCACGGAAAC
AAACATTTGATTTGCCCCTACAGATTATAAGAACGTTTACTTCAAAACGG
CGTAACttaacaaaatatgaaaaactctTTCGCTAGAAGATGAGTATATC
ACACTTTTTAATAGCTACAAAGTGGAACCACTTCAAACGGTCTAAGTCTT
ATTAAACTGACTTAGTttccaaaaaacaaatttgaattgGGAGCAAAAAT
GAGATGGTGTAAATGTCACTTGGTAACGTTATCATTTTCATATCGATTTA
GTTCagtttttagaataatttttggTATATATCTAATTTATTGACATagt
gatttttaatttttttagtttttttttactcaaaattttatGATTCCCTC
GAATATCTTTTAAACGACCTGGCAACAAGGGTAGTatagaagaattgaaa
aatggCAGTTAAGAATTCCATTAAATGACAACTCGGATCGGTTCGAATAA
TATTTCAATGACCTTATTACACGGGGAACAAGAAGAGATAAATACTTTAC
AGTACTTTTTTTTCAGTTCTTTATTCATGATTttcaccactgcaatgact
tctgacattacatcgcGGACCGCAAGTGCAAGTGACTAAAAccaatcaat
acgtcactttcaaccaatcagctgttgggtccgtggaagacattgcaatg
gttcatatcatgaatattttaaataaaaaaggtCTAAGACCATTTTCCTA
CTCATTGGCCTAATTATTTGAATATTATATTTCCCTCCCAACTCGGTGGT
TCATGGTGTGTTTTCTAATCTTTTCAAGATAATTATATATTTAAGATTTC
TTTAGAAATAATTCTAtagattttttgaagaattttcaatagTGTACCgt
gctgaatctaaaaatagattttatttttgacataattatccctctcgatg
tgtttgtacgagttccaatcccatcaatcTTTGCGTTagtctcttttgca
cgttaattgcatcatttgacaaaagatatataagaANT
Run BLAST on NCBI

protein sequence of TCONS_00066448-protein

>TCONS_00066448-protein ID=TCONS_00066448-protein|Name=TCONS_00066448-protein|organism=Clytia hemisphaerica|type=polypeptide|length=231bp
DLLPTEFLPTFLGQTFRLELFARPDGTVKISIEQNMEKEAATTNLSPSIF
LTGFGAFGEYNTNPSWLAVQEVSKIWPNKGEIHIKEIPVEYKYVEENIPK
YLENIKPKISINVGVSGLAEDKLQLEYCAHSSDYVQPDIDGCIGPDCSKD
VCLTTKFDLEKLIACCAGSALQVERSDNAGRYLCEFIYYTSMKTDECPSL
FVHVPVITEEITLEKITKTLESIIKACIQQV
Run BLAST on NCBI

transcript from alignment at scaffold_455:31300..43451-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066448 ID=TCONS_00066448|Name=TCONS_00066448|organism=Clytia hemisphaerica|type=transcript|length=12152bp|location=Sequence derived from alignment at scaffold_455:31300..43451- (Clytia hemisphaerica)
AGACTTGCTACCTACCGAATTCCTACCTACCTTCCTAGGTCAGACATTTC GTCTGGAGCTTTTCGCCAGACCAGACGGTACGGTCAAAATTTCGATTGAA CAAAATATGGAGAAGGAAGCTGCAACCACAAACTTGTCACCCAGTATTTT TTTGACAGGTATATGATAATTCTTGTATCCACATTCCACAAGCTTTTTAC TTCATTATCATTAATTTGATATTGTTGTTACAGTCGTCTTCATACTTATA AAAAACTTACCTATTTTTAGGCCGTGGCCAGTAAATTGTTTGTCTGTACA CAAACCCGATATCTACGGCTAATTTCAAAATTCATTGTCGTAGAGGGTCT GTTGTCATTGTCTTTTCTGGTTTGAGATTTCTCAAACCAACCGAGGACCC TGCCGACGCACCGGACCTAACGAACACCGGACACGCGAAAGTCCGGTGTA AAATGAGAATTTTTTTACCACCGGATAATTTCTACACCGGACTTAAGGAA GTCGGATGTCCAGTGTCGGAGAAGGATATTTTTCCCACCGGACAATCAAA ACACCGGACATGACCCAGTCCGGTGCGTCCGGTGTTTCTTAATTTTTTGT TTCATAAATGTCCGGCGTCCAAAATTCCCTATATGCAACACCGGAATGAC ACCGGACTTATTGCGTCCGGTGTAGCAAAAGGATACTTTTTGCCACCGGA CAAATACACCGGACAGTCCGGTGCGTCGGCAGGGTCCTACCAACCGCTGC GATGGAGTGCTGTTGGAGTTTGCGAGAAATCGGAGGCGATAAGAGAAAAT GGCCGTCAGAATTGTCAGAAAGTATAGAAGTTTGTCGAAAAAATGTGTTT TCATGACAAAACTGGCTTCCTATTTTTTAATAAATGGAATAAAAGAGAGA TCTATCGTTAACTCATTTAAAATGGTGGACAGAGTTGCGGAATGACGAAG GCGCCCACTGCTTCAAGGGTGGTAACGCCAAAACGCCCAATATGACCAGC CAACAGAAGGCGAGTTTGTTGCCGCGCGAGTTACGTCATCCGATCCACCG TAGCGAAAGCGCGAACGACATTTCACAATTATAAGAATATCTTATGTGCT TAATTCTATTTGACTTTGAGAGCTTCATGAAAGATGAAGAAGTAGAAAGA TGAAAAATGCGCTGGTTAATTTTTTTTAAATAGGTGTGTTCTATCATTGT TGAAAGTTGAAGAAATTTCTACCGACGCATAATTTTTTTACAGCCAATTA AAGGCACAGTCTGCTTATACCGTAGGTCGGGGAAACTTCGGACAGATTTT CAAGTTTTTTCTTTATTTCTCGAGGAATATGAAAAATAAATCAACCAAAC TTACTGTACATAACATTTGTGTTATTGTCTTTTAGAAAACAAACGTTACA AGTAAATCAGCCAGGTCATTATGAAAGAAACACCATCTCAANNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN ACCAAGAGACAAATTCGTGTGAGCCGAGAAATTAACGACATAAAGATACG AATTGCGCTTAATTGGTCATTAATTTTCTGGGCGTGCGATGGAAGTGTGA ATGATAAAACTCATCAACCAATCATTAGTTTTTATGGACGTTAAATACAT GATGAGAGGGTCTTCCTCAGAGTGAATTGGTGAAACAAACACGTTTTATA AGAACTTTTTCAATTAGACTGTCTCGTTTCCTTATGATACTATCATATCG TTATATTTCATTAGATATTTTTCTTATTTTTCGCGGGACTTTTGGATGCT AAGTTCTGAGTATTATTTTTTTCGGAAGCCCATAAACTTTTCCGACTTTC AAATAAAGTAACAACGGTCTTTTTAAAACACCCTTGTGTCGAATCCCGCT CCACTTGAAAAATTGGGCCGAGATTTCGTAACCGGTGGGGAAACATCTTT TCAATTTCAACCTCATTAGGAAATTGAAAAAAGCACTTCAAAACTAGTCA GAAAGTCTGCCGTATACTATCTTCGCTTTCTGATTTGAATGATGGCGCTG CGATAGGACGTCAGAGGGAACCCCTCAACCGTTTTTGGTCGACGCATGCG TCAACTTTTGAAAATTATTCTAAATTGCGCAATATCTGTGGTTGTTTGAT TAAAAATAAAATGCCCGTTTGTTTGTCTTTAAATAATGTTTTTATCTTAG TGAGGAAAACCACAGCTTAATTATTGATTTTGACTAACTGCCGTTCAAAA CAAAATCTAATTCCGAGAATCTAAAAGTTTACGAAGCAATTCTACAATGA AGATCTTAAAGAAGAAAACCAATCTAATCACATTGAGAAAATAATGGAAG TCTTTCCTTTTGCCATTAAGAAAAAGTAATATTCGATGCTGTTGCTAATA TGTATACTCACTTTCTTTTTCATACGGCTGTCCTCCTATAATTATCTACT TTATCCTTTATCTACAATGGAGTGCAATTTCTACGCTAATACGGCAGAAA GTATATTGAATAGAATGCTCTCTCATTCCCTGTGTTAAAAACAAAATAGA GAGAGTTTCGTGGTTGCACGGCTTTTCTAAAATATCCTCTCAATATCTTG ATTTTGTTTGAGATATAGATCTTTAGTTGATACAACCAAGGGGATGTAAA TAAACCTTCGAGAAGTCGAAGGCAAAATGGTAGATAAGATACGGTAGAAA CGAACGAAGATCTGATCAGTGGGTGGTAAAAGATGATTGTTTATTTTCAA ATTGGGTGATTAATTTTACACTTTTTGAACAAGATCTTTTGGTTTTTACA TCTGAAAACACAAGTGAGGAAGACATTGTTGTTCATTATGTTTTATATAC AACAGGAGGAAAAGAAAAAACACTTATAAAATAGTGATTTCTCTTCTCTT TTTAAAAATAAAAGTTTATGTTAAACTTTTATGTTTTTTTTCTGCCATTT CAGATTGAATAATTATGGTGTCAGCCCCTCTAATTATGCCAAGACCTTAG TTATAAATTTAAAAAAGAGGGAATTCTGATTGGTTTTAAATTCAAATTTG GTGTGACAGTTAATAGTTTCAGCTACATAATTTGTGGGTTCCACTGGACT CTCTATTTTTTCCACCATCAGATTTTATCAAAGGCAAAAAATAGTTGAGC TCCAGACCCTGGACTATTCAAAACGACCCCAACGAATTTTGATAAAAATT TCAACCCTATTTTTTTATGTGTTGTTTTGAGTGAAGTTCCACCGGGGCTG TGTGAAACATGGGTGTTATAGAGATATAAGCGAGAGAGCTAAATGTTGTT TCAAGTTTTATTTTTCGCAATATGAGAATTTAGCTTTGATTCCTGTATAC ATTCCCGTATTACGTATTACGTAAACTACTTTAGTAGTTTCAGTGAAATC GGAATCAAAGCAGCATAAAGCCATCGCTGTGGACAAATGGGTGTTTTTTA TACAAGTCAAGTGAAATTTAATGTTTGCTAAAAATATCGCTTTAAATAAC TTAAGTTACTGTTGACTTTCATATTCAACTTGACTATACTAGGAGGCCAC TACTTTTTCCTACACAGCCAGCGGAATAATAAAACCCAGTCTTTGATGAG GTTTCCAATTTATCAAGAGATAGAAAATTGACTTTCTATTCAACAGTAGA CTACAATTTTTTTTGATTTAGATAATTGTTCGGCGATGGACCAGAATGAC GTGCGAGGAAGTTAGCGCGATCAAGATCGTGGTTAAAAGTAACCCAATAT ACTACACAAGGCTTGCCTATGTCTTAGTAGTGAAAGAAATCGGAACGAAA CGCCGTACTGTAAATCACAAATTAAATACTAATTAAATACTAATTAAATG TTTTCTTACCAGTGGGACCACGGGCGGATCACGAGTTCGTCGATGCAGGT TTTATAGATTAGATTAAAAAGAGATGAAAAGAAATAAATAGAAAATACCT ACCGAGTAAGTAAGAACTTCAATGGTAGACTAGAAACATAATATTGTATC TAATTCTGCTTCATTACTGCTGTTTACCTTACTTTAAATAAGACACCCCT ATCTCACAGTGGCCCCGGTGGAATTTTTTCCAACAGAGGGGATAAAAATT CCCATTGATATTTTTGCCAAATTTTCCAGTGGGGCTGGATGATCTGTGAC ACAGGGGTGTAATAAGCTTATACCATTTGACGGGTTTGAAATTTTTGAAC TTATCGTTTTTTGATTTGAGTTAGAGGTTAAGTGTTACGATAACGAAATT TAGTTTGTTAATACAGCCGAAAATGTATCGACTATATACACCCACTTACG GATTTAAGAAGATGGAGCAAGTATGTCGGAAGCATACGAAGGAGTGCAAC ANACGTGCTATAAGAATCTTACACCCGGGCCATAGGGTTAGTCACTAGCG GATTTAAGACAATAGAGCAACTAAGTCCGAAACATGCGAAGGAGTGCAAC ACTCGTTAAAAGACAATGAATTTACAATTACAAATATCTTCCTCTGATAA GTTCGACATGGTCTAAAACCGCCTATAACCCTCCAGTAACATAGTGAATA AGAGGTTTCTTGAGTCAAAATGATTTGTAAGCCAGCTGTAAGAACCATCG ACGGGCTGTCATATCACCAAAGCGGCCTTTTTGCTAATGATATTTCGATT GTCAATTTGCAGTATTTTTTTCACCGGCAACACATTCATTAACATTAGGC AAAAAAGGAACAGGTAAACAGGTTCTATCACAACCATTCAATACAAAATG TTTAAGTGGAAACACCCCTGTCTTGACTACCGAGATGATAAAAATGTTTA ACCTATTTCAGCTATTGTTAATGGGCTGAATGATAATAACTTAGGAGTAG TTTTCACATCAAAGCCACAATAAATTGATTATATTTATTTTGGAGAAATT CGGCACCTGGATCTGGCGAAATCACTGATCACTTTAGCTTAGGCGTACAA ACGAGCACAAAGTTTCGCGAGGCTGAAATAACGCAAAGTTTCTACAAACT TTCACGAATCGTTAATTTTAAAATTTTTAAACAAATAATGGCTTATTAAA GGGACAAACACTTCTTGAATGAATTGGATTGCAACCTGTGTCTTTTGACT TATGAGGCTAAAAGTGCAATGAATCCGTGTGAATCTTATATTTATTACAG CTTTTTACAGATTTTCTATTTCGTCAAAAACTTTTCGTCTGCATAAACTT TCGCGAATGGCCTGAAAGAGAAATTTCTTTTCTGCATAAACTTTCGCCAG CAGAATTTTTCGCGACTTTTGCAAATTTTGGCCTTTTTGGCGAAAGTAAA TGTCTTTGAAAATTCTGAACGGGCCAAGTTTATGCTCGTGAAAACTTATC AAAAGAATTGGAAATCTATAGAACCTTAAATCGTAATAAATATCAAATTT TCGACATCATTTTATAGTTTAATGCCTGTTATAGTCGAAGAGCAACAGTC TTTATCGGATTTAAGGTATATTTTTCCATTTTAAGGCAATTTTCATTCAA AAGTTCTCATTTATATCCAACGATNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNTATCTGCACGTTTATCATCAATGTCTGGTGACGTCAGAACA AAGTTCTTATAATTGCTTCGAAATCACATTATGTTTCTCTTGGGATTCGT TTAAAGAAGATCTATCTCGGCTGTCGGTAAAGCTATTCTCGCAGTGACTT TCTCGGCGAATTTATGGAGCAACTTTGAAGAGCTATTGAAGATTGAGGAA TGCATATTTTTAGCCCAAATAACTNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNCCCAAATAACTTTTAACGTGACATTCAATGTCTCCTCTTTTCATCAC GTAAATAAAATTATGAGGTCGCCGCTTTAGATATCCAACAAATCTCTTTA CAATGAAAGATGGTAAAATATCGTGGTTTTCTTCAATTTCTTCTTCGTTC TTCTTTCGGTGTTCCGTCGCTTGATATGTATCGTCGAGTGTACTTTATTT CCGAACTGTGAAAGAAAAAAGTACGTTAAAATGTTAAATCCTCGCGAAGT AATCACTTGTTAAAGATTTTAGTCCGAAGTTTCCTTCATTCCGAAGTTTC CCCGACCTACGGTACTTACTATGTTTGCTATATCATCTAGGCAAAAAACG GTAAAAAAAGACACAAACACAATTTTTTTATGAGTGTGGTTATGATTTCT TTGCTTGCGGCCGCGTACAGGAACTCGCCAAATGTTCCTAACTGATAGAG GGTAATGGGAAAATAATTTTCTATTAGACAATTTTGAATATGTCTTTGTT ACTTTTCAGCTTTTAGTTTGGCTCAAAAACATTAAAAAAGCAACCACATG CTTAGAAAGTGACCCTCGATCATGGACCCCATCCTTTTGTTTACAATTGT CGTAACTTTGGCTGCCATTTTATTTTAAAATTATACTTCATTGCAGAGGT CTCCGTACGGGAATTTTTTTATCAAACAGACAATGCACACAGAGTGTACT ACTACGATAATCGTGAGATACACTCTGGTACAGAGTAGTGGATTGTTAAT GTTTCAAAAAATAAAGAAAAAATTCAAAATGTCTGGGACCAACTTTTTGA TATGTTTCTTACTCAATTTGAGGGTGCTTGACAAGCTTGGTAACATTTAA ATTCCGAATCAGCACCCTCAAACTGACCAAAATCAATTCTAAAAGCTTGG TCACTGACATTTTGAAAAAAAGTGAAACATTTTGGTGGCACTGACCATGG CCAGATTCACGCAATCTGTCAAAACTTTGTTTGTGTGTTTCAACAAAATC GCAAACTAGTCTGACACTTTCTAGTTCGACGACAAAACAGTCCAAATCCA GCTGAAATGTAATCAGCTTGCGAGTATGTATCTATTCTTGAAAATAAGAG GCTGATAGTCCCATGTTCTTTTATCAATGACGTGCTTTTTTTCCTTCTGG TAGTGTGGCCAAAAATAACCTTTTCCTACTTTTCACTAGCTAATCAGTAG ACTTTCTCCTTCCCACAACAAAACGTATTTTTTATTTTCATATTTGACTA AAGAACAAATTTATTTTAAGCCAAGTCTGTGTGTAACAGATATGCAGGCT TATACCTGCATTATTTCAGAATTTTAATATTTTTTCCTCTGACAAAAAAA TATGACCATTGATGGTACTGTTTAAAATAGAATTTCATGATTTGCTGCCA TTTTTGTACAGGTGTGTCTGTGGTTGAATACTTTCTATATTGGTTTTATG TTTTTATTCTGAAGGTAGAGAGACCAGCAGAGGGAAGGGGGTCAGTACTA AAACCTCGGAAATTATGATGTTTAGTGATGTGGTGGTATACGCAAAAAAA CTCTTTTTAATATTTTAGTATAAACCACAGGGAAATAAAATGCCAAAAAG GTGGCATCCAGACTAAAATTTAGTACATTTGTATATACTGAAATTAGTGA TTTCATCATTTTTTTAATCTTTTTCAAAAATGTTCGTGATTTTTCAGAAC TTTTCAAAAAAGAATTTGAAATTTTTTCATTCTAAGAAAGTGTCCAGAGT TCAATATCTTTGCATTCAGTCAAATGTGTAAAGGTATCAATTTTGGCCTA TGTGTCAAAATCTCTCCAAAAACATGGTTACTTCTCTAAAATTGGGTGGT GGTATGCAAAATGTTCTCATATATGTCCAAGATTTTAGTACGGACCCCTT TGAGACCAGATATATTTCAAGATATCTTTTAACTTGTCTTTGTTGCGGCA AGTATATTTGTCTAGGATGATTCTTTATATACATGTACATTGTTTTTCTT TCAGGTTTTGGAGCCTTTGGTGAGTATAATACAAACCCAAGTTGGCTGGC TGTCCAGGTTTGTTTTACCTGGTTTTATTTGTATAAGAAAAATTTTACTG ATTTGTTAGTTTATATAACTGTTATTTGTTAACTTTTAATGATTGCCTGT CATGCTTCAGTCCAAAACATTCTTTCCATTGCCCTTATAGTAAAAAGATT GTACACTCTTTTTTTAAACGCCTCCTCAAATAAACGCCCCCTCGAATAAA CGCCCTCCTTTGAGGAAAAATTTTCAAGAGCGCCCCTTCGAATAAATGCC TCCCCTCTAGGAGGGGCGTTTATTTGAAACAATTAGCTGTAAGAAAGAAT AATTTGAAAGAAAACATCCCTAAATGACGTATTTGTATTCAAATAATAAA GAAAAGGCAAAAGTAAGGTAGCAATTCACACTAATAAAATGAACTTGGTT CTAAGTTATTTAATAAACGCCCCTTCTTTTAAACGCCCCTTCTAAAAATT GAAAGATTTAATAAACGCCCGGGACGTTTATTCGAAGTAATACGGTATGT CCCCTTGTTATCTGAAATACCCAAACCTATTTGGACCATGCTTTAGTTAG ATCACCATTAAAGTTACAAGGTTAAACAGATCAAAGCATTAGCATTTTTC TATCATTTAATTCATTTCAAACTTTCCCCCTAATTGTAAATTGTCTTCAC AATTTCTTTAGGAAGTTTCAAAGATCTGGCCTAACAAAGGAGAGATACAC ATTAAAGAAATCCCAGTAGAATATAAATATGTTGAAGAAAATATACCAAA ATATTTGGAAAATATAAAGCCAAAGGTATATTATTTATTATTTTATATCA AGAGATTACAGACTATTAGTAAGTAATAAAGTTTCTTAAGTAATTTATTA TATTTGAGCTCTTTATTCATTCATAATATGATTTTATATAGATTTCAATC AATGTTGGTGTATCAGGCCTTGCAGAAGATAAACTTCAATTGGAATATTG TGCTCACTCGTCAGATTATGTGCAACCAGATATCGATGGATGTATTGGCC CAGATTGTTCGAAGGATGGTAAATGCTCTTTTTCGTTATCATGATCTATA AAATCATTACCGTGTTAAAATGTTTTAATGTCTAATAACTACAGCAATTA TTTCGAAAAGAACTTTATATCTAATTCCGGCTGGCAAATAGAACAAATAT TTGCAAATTTTAGGTTGGCGGCTGTTTCTGTGAAACATACACATTGTTTT TCTCTTATAGCCTTATAGAAGCATATCTAGATTCAATGGAAAGTGCCTTG AAGATGGCTCCATCTCGTTTACAAGTGACGCAATCTTAACTATATATAAT CTGAGCAAAGAGAACAAAATTACTTTCTTTTAGTGTGTTTGACTACAAAG TTCGATCTTGAAAAATTGATTGCTTGTTGTGCTGGCAGTGCTTTACAAGT AGAAAGATCAGACAACGCGGGAAGGTGAGTTGATGTTATAATGTTTTCTT TTACTAGTGAGCATTTATTCTTTTAAACATAAAACGGCTTTTTTCAAGCG TATACTTCCCAGCTGTCGTCTACCTTTAAATGTGTTGACGTTTATTTTAA AATTGTATTTTGAAAATGAACCTAAAGTCTATCTCAATATCATTTGCAGC GGAGACAAAAAAAGCTGTAACTTTTGATAGAATTCGAATTAGAAAACGGT TTTATGCTCGTTTAAAAGATAATCAAAGAGGAATATTATCAACAAAAAAA AAATTAAAAAATAGGAAAATGAAGATAAATAATGCTANAAATTTAAAAAT GGAAAAATGAAGATGAATAATGAAGAATAAGAAAATCAACTTCTTATAGA AAATGCTCTGATCTTCATTTTTATATCAGAGATTCTTCAATCTTAGAACG TCATAAATGGGGAAAAAATTCAAAAAATATTTATTNNTGCACTCAATTGT GACAATTATGACAAATTAAAAAAGAAAAACTTTGCATTTAGCAAAATAAC CATTTTTGAAAAAATTATTGGGGGGGGGGCATAGCCCCCCCAGTTGCTAC GGCACTGTTTAGTGAGAAGCTCTCGACTATATCTTTCGATTGAAAAAAGT TTTTTGAAAGATTTTTTCACATTGATGATATTGATGTTCTAAGATCAAAG AATCTCTCGTGTGAAAATGATGATCATAGCACAATTATTGAAGAAGTTGA TTTTCTTCTTCATTTTCAATCATCATTTTTCGATTTTTTTTGAATTTTTC TTTTGTTGATAATATTCCACTCATGTTTGTCTTTTCAACAAGTACAACAC CTAATTCTATCTAATTCGAATTCTATCAAAAGTTACAGCCTTTTTTGTCT CCGCTGCAAATTATATTGAGACAGATTTTAGACACTTTATTTCGATCAAG CCACTTCCCTAAAAAACTTCAAGCTGACGAGAACTATAACGTTCGTACAT ACTGAGGAGGTGTAACTCCTTAATGGTTCAACATATACAAAGTAAATCGA TTTTCAGGTATTTATGCGAATTCATTTACTACACATCAATGAAGACGGAT GAATGTCCATCGCTATTCGTCCACGTGCCTGTCATCACTGAAGANTCGAT TTTTCAGGTATTTATGTGAATTCATTTACTACACATCAATGAAGACGGAC GAATGTCCATCGCTATTTGTTCACGTTCCTGTCATCACTGAAGAAATTAC ATTGGAGAAAATTACAAAGACTTTAGAAAGTATTATAAAGGCGTGCATAC AACAGGTGTAGAAGTTGGTTCCACGATAAGTAGTCCGATTTGTAAAATCT ATACTTCATGTATATAACTTTCTCATGTATGGTTAAATTATGTAATTTCC GCCATCACGGAAACAAACATTTGATTTGCCCCTACAGATTATAAGAACGT TTACTTCAAAACGGCGTAACTTAACAAAATATGAAAAACTCTTTCGCTAG AAGATGAGTATATCACACTTTTTAATAGCTACAAAGTGGAACCACTTCAA ACGGTCTAAGTCTTATTAAACTGACTTAGTTTCCAAAAAACAAATTTGAA TTGGGAGCAAAAATGAGATGGTGTAAATGTCACTTGGTAACGTTATCATT TTCATATCGATTTAGTTCAGTTTTTAGAATAATTTTTGGTATATATCTAA TTTATTGACATAGTGATTTTTAATTTTTTTAGTTTTTTTTTACTCAAAAT TTTATGATTCCCTCGAATATCTTTTAAACGACCTGGCAACAAGGGTAGTA TAGAAGAATTGAAAAATGGCAGTTAAGAATTCCATTAAATGACAACTCGG ATCGGTTCGAATAATATTTCAATGACCTTATTACACGGGGAACAAGAAGA GATAAATACTTTACAGTACTTTTTTTTCAGTTCTTTATTCATGATTTTCA CCACTGCAATGACTTCTGACATTACATCGCGGACCGCAAGTGCAAGTGAC TAAAACCAATCAATACGTCACTTTCAACCAATCAGCTGTTGGGTCCGTGG AAGACATTGCAATGGTTCATATCATGAATATTTTAAATAAAAAAGGTCTA AGACCATTTTCCTACTCATTGGCCTAATTATTTGAATATTATATTTCCCT CCCAACTCGGTGGTTCATGGTGTGTTTTCTAATCTTTTCAAGATAATTAT ATATTTAAGATTTCTTTAGAAATAATTCTATAGATTTTTTGAAGAATTTT CAATAGTGTACCGTGCTGAATCTAAAAATAGATTTTATTTTTGACATAAT TATCCCTCTCGATGTGTTTGTACGAGTTCCAATCCCATCAATCTTTGCGT TAGTCTCTTTTGCACGTTAATTGCATCATTTGACAAAAGATATATAAGAA NT

Coding sequence (CDS) from alignment at scaffold_455:31300..43451-

>TCONS_00066448 ID=TCONS_00066448|Name=TCONS_00066448|organism=Clytia hemisphaerica|type=CDS|length=4872bp|location=Sequence derived from alignment at scaffold_455:31300..43451- (Clytia hemisphaerica)
ATCAATGAAGACGGACGAATGTCCATCGCTATTTGTTCACGTTCCTGTCA
TCACTGAAGAAATTACATTGGAGAAAATTACAAAGACTTTAGAAAGTATT
ATAAAGGCGTGCATACAACAGGTGTAGGTATTTATGCGAATTCATTTACT
ACACTGTGTTTGACTACAAAGTTCGATCTTGAAAAATTGATTGCTTGTTG
TGCTGGCAGTGCTTTACAAGTAGAAAGATCAGACAACGCGGGAAGATTTC
AATCAATGTTGGTGTATCAGGCCTTGCAGAAGATAAACTTCAATTGGAAT
ATTGTGCTCACTCGTCAGATTATGTGCAACCAGATATCGATGGATGTATT
GGCCCAGATTGTTCGAAGGATGGAAGTTTCAAAGATCTGGCCTAACAAAG
GAGAGATACACATTAAAGAAATCCCAGTAGAATATAAATATGTTGAAGAA
AATATACCAAAATATTTGGAAAATATAAAGCCAAAGGTTTTGGAGCCTTT
GGTGAGTATAATACAAACCCAAGTTGGCTGGCTGTCCAGGACTTGCTACC
TACCGAATTCCTACCTACCTTCCTAGGTCAGACATTTCGTCTGGAGCTTT
TCGCCAGACCAGACGGTACGGTCAAAATTTCGATTGAACAAAATATGGAG
AAGGAAGCTGCAACCACAAACTTGTCACCCAGTATTTTTTTGACAGATCA
ATGAAGACGGACGAATGTCCATCGCTATTTGTTCACGTTCCTGTCATCAC
TGAAGAAATTACATTGGAGAAAATTACAAAGACTTTAGAAAGTATTATAA
AGGCGTGCATACAACAGGTGTAGGTATTTATGCGAATTCATTTACTACAC
TGTGTTTGACTACAAAGTTCGATCTTGAAAAATTGATTGCTTGTTGTGCT
GGCAGTGCTTTACAAGTAGAAAGATCAGACAACGCGGGAAGATTTCAATC
AATGTTGGTGTATCAGGCCTTGCAGAAGATAAACTTCAATTGGAATATTG
TGCTCACTCGTCAGATTATGTGCAACCAGATATCGATGGATGTATTGGCC
CAGATTGTTCGAAGGATGGAAGTTTCAAAGATCTGGCCTAACAAAGGAGA
GATACACATTAAAGAAATCCCAGTAGAATATAAATATGTTGAAGAAAATA
TACCAAAATATTTGGAAAATATAAAGCCAAAGGTTTTGGAGCCTTTGGTG
AGTATAATACAAACCCAAGTTGGCTGGCTGTCCAGGACTTGCTACCTACC
GAATTCCTACCTACCTTCCTAGGTCAGACATTTCGTCTGGAGCTTTTCGC
CAGACCAGACGGTACGGTCAAAATTTCGATTGAACAAAATATGGAGAAGG
AAGCTGCAACCACAAACTTGTCACCCAGTATTTTTTTGACAGATCAATGA
AGACGGACGAATGTCCATCGCTATTTGTTCACGTTCCTGTCATCACTGAA
GAAATTACATTGGAGAAAATTACAAAGACTTTAGAAAGTATTATAAAGGC
GTGCATACAACAGGTGTAGGTATTTATGCGAATTCATTTACTACACTGTG
TTTGACTACAAAGTTCGATCTTGAAAAATTGATTGCTTGTTGTGCTGGCA
GTGCTTTACAAGTAGAAAGATCAGACAACGCGGGAAGATTTCAATCAATG
TTGGTGTATCAGGCCTTGCAGAAGATAAACTTCAATTGGAATATTGTGCT
CACTCGTCAGATTATGTGCAACCAGATATCGATGGATGTATTGGCCCAGA
TTGTTCGAAGGATGGAAGTTTCAAAGATCTGGCCTAACAAAGGAGAGATA
CACATTAAAGAAATCCCAGTAGAATATAAATATGTTGAAGAAAATATACC
AAAATATTTGGAAAATATAAAGCCAAAGGTTTTGGAGCCTTTGGTGAGTA
TAATACAAACCCAAGTTGGCTGGCTGTCCAGGACTTGCTACCTACCGAAT
TCCTACCTACCTTCCTAGGTCAGACATTTCGTCTGGAGCTTTTCGCCAGA
CCAGACGGTACGGTCAAAATTTCGATTGAACAAAATATGGAGAAGGAAGC
TGCAACCACAAACTTGTCACCCAGTATTTTTTTGACAGATCAATGAAGAC
GGACGAATGTCCATCGCTATTTGTTCACGTTCCTGTCATCACTGAAGAAA
TTACATTGGAGAAAATTACAAAGACTTTAGAAAGTATTATAAAGGCGTGC
ATACAACAGGTGTAGGTATTTATGCGAATTCATTTACTACACTGTGTTTG
ACTACAAAGTTCGATCTTGAAAAATTGATTGCTTGTTGTGCTGGCAGTGC
TTTACAAGTAGAAAGATCAGACAACGCGGGAAGATTTCAATCAATGTTGG
TGTATCAGGCCTTGCAGAAGATAAACTTCAATTGGAATATTGTGCTCACT
CGTCAGATTATGTGCAACCAGATATCGATGGATGTATTGGCCCAGATTGT
TCGAAGGATGGAAGTTTCAAAGATCTGGCCTAACAAAGGAGAGATACACA
TTAAAGAAATCCCAGTAGAATATAAATATGTTGAAGAAAATATACCAAAA
TATTTGGAAAATATAAAGCCAAAGGTTTTGGAGCCTTTGGTGAGTATAAT
ACAAACCCAAGTTGGCTGGCTGTCCAGGACTTGCTACCTACCGAATTCCT
ACCTACCTTCCTAGGTCAGACATTTCGTCTGGAGCTTTTCGCCAGACCAG
ACGGTACGGTCAAAATTTCGATTGAACAAAATATGGAGAAGGAAGCTGCA
ACCACAAACTTGTCACCCAGTATTTTTTTGACAGATCAATGAAGACGGAC
GAATGTCCATCGCTATTTGTTCACGTTCCTGTCATCACTGAAGAAATTAC
ATTGGAGAAAATTACAAAGACTTTAGAAAGTATTATAAAGGCGTGCATAC
AACAGGTGTAGGTATTTATGCGAATTCATTTACTACACTGTGTTTGACTA
CAAAGTTCGATCTTGAAAAATTGATTGCTTGTTGTGCTGGCAGTGCTTTA
CAAGTAGAAAGATCAGACAACGCGGGAAGATTTCAATCAATGTTGGTGTA
TCAGGCCTTGCAGAAGATAAACTTCAATTGGAATATTGTGCTCACTCGTC
AGATTATGTGCAACCAGATATCGATGGATGTATTGGCCCAGATTGTTCGA
AGGATGGAAGTTTCAAAGATCTGGCCTAACAAAGGAGAGATACACATTAA
AGAAATCCCAGTAGAATATAAATATGTTGAAGAAAATATACCAAAATATT
TGGAAAATATAAAGCCAAAGGTTTTGGAGCCTTTGGTGAGTATAATACAA
ACCCAAGTTGGCTGGCTGTCCAGGACTTGCTACCTACCGAATTCCTACCT
ACCTTCCTAGGTCAGACATTTCGTCTGGAGCTTTTCGCCAGACCAGACGG
TACGGTCAAAATTTCGATTGAACAAAATATGGAGAAGGAAGCTGCAACCA
CAAACTTGTCACCCAGTATTTTTTTGACAGATCAATGAAGACGGACGAAT
GTCCATCGCTATTTGTTCACGTTCCTGTCATCACTGAAGAAATTACATTG
GAGAAAATTACAAAGACTTTAGAAAGTATTATAAAGGCGTGCATACAACA
GGTGTAGGTATTTATGCGAATTCATTTACTACACTGTGTTTGACTACAAA
GTTCGATCTTGAAAAATTGATTGCTTGTTGTGCTGGCAGTGCTTTACAAG
TAGAAAGATCAGACAACGCGGGAAGATTTCAATCAATGTTGGTGTATCAG
GCCTTGCAGAAGATAAACTTCAATTGGAATATTGTGCTCACTCGTCAGAT
TATGTGCAACCAGATATCGATGGATGTATTGGCCCAGATTGTTCGAAGGA
TGGAAGTTTCAAAGATCTGGCCTAACAAAGGAGAGATACACATTAAAGAA
ATCCCAGTAGAATATAAATATGTTGAAGAAAATATACCAAAATATTTGGA
AAATATAAAGCCAAAGGTTTTGGAGCCTTTGGTGAGTATAATACAAACCC
AAGTTGGCTGGCTGTCCAGGACTTGCTACCTACCGAATTCCTACCTACCT
TCCTAGGTCAGACATTTCGTCTGGAGCTTTTCGCCAGACCAGACGGTACG
GTCAAAATTTCGATTGAACAAAATATGGAGAAGGAAGCTGCAACCACAAA
CTTGTCACCCAGTATTTTTTTGACAGATCAATGAAGACGGACGAATGTCC
ATCGCTATTTGTTCACGTTCCTGTCATCACTGAAGAAATTACATTGGAGA
AAATTACAAAGACTTTAGAAAGTATTATAAAGGCGTGCATACAACAGGTG
TAGGTATTTATGCGAATTCATTTACTACACTGTGTTTGACTACAAAGTTC
GATCTTGAAAAATTGATTGCTTGTTGTGCTGGCAGTGCTTTACAAGTAGA
AAGATCAGACAACGCGGGAAGATTTCAATCAATGTTGGTGTATCAGGCCT
TGCAGAAGATAAACTTCAATTGGAATATTGTGCTCACTCGTCAGATTATG
TGCAACCAGATATCGATGGATGTATTGGCCCAGATTGTTCGAAGGATGGA
AGTTTCAAAGATCTGGCCTAACAAAGGAGAGATACACATTAAAGAAATCC
CAGTAGAATATAAATATGTTGAAGAAAATATACCAAAATATTTGGAAAAT
ATAAAGCCAAAGGTTTTGGAGCCTTTGGTGAGTATAATACAAACCCAAGT
TGGCTGGCTGTCCAGGACTTGCTACCTACCGAATTCCTACCTACCTTCCT
AGGTCAGACATTTCGTCTGGAGCTTTTCGCCAGACCAGACGGTACGGTCA
AAATTTCGATTGAACAAAATATGGAGAAGGAAGCTGCAACCACAAACTTG
TCACCCAGTATTTTTTTGACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041569XLOC_041569Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066448-proteinTCONS_00066448-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066448-exon-scaffold_455-1575043694:43294..43451TCONS_00066448-exon-scaffold_455-1575043694:43294..43451Clytia hemisphaericaexon
TCONS_00066448-exon-scaffold_455-1575043694:35095..35147TCONS_00066448-exon-scaffold_455-1575043694:35095..35147Clytia hemisphaericaexon
TCONS_00066448-exon-scaffold_455-1575043694:34327..34440TCONS_00066448-exon-scaffold_455-1575043694:34327..34440Clytia hemisphaericaexon
TCONS_00066448-exon-scaffold_455-1575043694:34084..34210TCONS_00066448-exon-scaffold_455-1575043694:34084..34210Clytia hemisphaericaexon
TCONS_00066448-exon-scaffold_455-1575043694:33678..33768TCONS_00066448-exon-scaffold_455-1575043694:33678..33768Clytia hemisphaericaexon
TCONS_00066448-exon-scaffold_455-1575043694:32618..32644TCONS_00066448-exon-scaffold_455-1575043694:32618..32644Clytia hemisphaericaexon
TCONS_00066448-exon-scaffold_455-1575043694:31300..32517TCONS_00066448-exon-scaffold_455-1575043694:31300..32517Clytia hemisphaericaexon
TCONS_00066448-exon-scaffold_455-1510915933:43294..43451TCONS_00066448-exon-scaffold_455-1510915933:43294..43451Clytia hemisphaericaexon
TCONS_00066448-exon-scaffold_455-1510915933:35095..35147TCONS_00066448-exon-scaffold_455-1510915933:35095..35147Clytia hemisphaericaexon
TCONS_00066448-exon-scaffold_455-1510915933:34327..34440TCONS_00066448-exon-scaffold_455-1510915933:34327..34440Clytia hemisphaericaexon
TCONS_00066448-exon-scaffold_455-1510915933:34084..34210TCONS_00066448-exon-scaffold_455-1510915933:34084..34210Clytia hemisphaericaexon
TCONS_00066448-exon-scaffold_455-1510915933:33678..33768TCONS_00066448-exon-scaffold_455-1510915933:33678..33768Clytia hemisphaericaexon
TCONS_00066448-exon-scaffold_455-1510915933:32618..32644TCONS_00066448-exon-scaffold_455-1510915933:32618..32644Clytia hemisphaericaexon
TCONS_00066448-exon-scaffold_455-1510915933:31300..32517TCONS_00066448-exon-scaffold_455-1510915933:31300..32517Clytia hemisphaericaexon
TCONS_00066448-exon-scaffold_455-1491911889:43294..43451TCONS_00066448-exon-scaffold_455-1491911889:43294..43451Clytia hemisphaericaexon
TCONS_00066448-exon-scaffold_455-1491911889:35095..35147TCONS_00066448-exon-scaffold_455-1491911889:35095..35147Clytia hemisphaericaexon
TCONS_00066448-exon-scaffold_455-1491911889:34327..34440TCONS_00066448-exon-scaffold_455-1491911889:34327..34440Clytia hemisphaericaexon
TCONS_00066448-exon-scaffold_455-1491911889:34084..34210TCONS_00066448-exon-scaffold_455-1491911889:34084..34210Clytia hemisphaericaexon
TCONS_00066448-exon-scaffold_455-1491911889:33678..33768TCONS_00066448-exon-scaffold_455-1491911889:33678..33768Clytia hemisphaericaexon
TCONS_00066448-exon-scaffold_455-1491911889:32618..32644TCONS_00066448-exon-scaffold_455-1491911889:32618..32644Clytia hemisphaericaexon
TCONS_00066448-exon-scaffold_455-1491911889:31300..32517TCONS_00066448-exon-scaffold_455-1491911889:31300..32517Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_455supercontigscaffold_455:31300..43451 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
10.2537 10.1892 5.54775 5.41555 7.48618 5.04088 7.59114 8.64815 6.94942 6.12622 5.71231 5.51943 7.28036 7.66635 7.97872 10.24 8.62843 8.03379 7.52835 6.8028 6.6479 6.39671 12.4654 12.2838 9.01415 13.2632 5.84899 4.70024 9.64092 10.2951
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000816Peptidase_C15
IPR016125Peptidase_C15-like
Vocabulary: Cellular Component
TermDefinition
GO:0005829cytosol
Vocabulary: Molecular Function
TermDefinition
GO:0016920pyroglutamyl-peptidase activity
Vocabulary: Biological Process
TermDefinition
GO:0006508proteolysis
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
cellular_component GO:0005829 cytosol
molecular_function GO:0016920 pyroglutamyl-peptidase activity
Blast
BLAST of TCONS_00066448 vs. Swiss-Prot (Human)
Match: PGPI (Pyroglutamyl-peptidase 1 OS=Homo sapiens GN=PGPEP1 PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 2.273e-26
Identity = 64/165 (38.79%), Postives = 92/165 (55.76%), Query Frame = 2
Query:  143 SIFLTGFGAFGEYNTNPSWLAVQEVSKI-WPNKGEIHIKEIPVEYKYVEENIPKYLENIKPKISINVGVSGLAEDKLQLEYCAHSSDYVQPD-IDGCIGPDCSKDVCLTTKFDLEKLIACCA-----GSALQVERSDNAGRYLCEFIYYTSMKTDECPSLFVHVP 616
            ++ +TGFG FGE+  N SW+AVQE+ K+   +  ++H+ EIPVEY+ V+  IP   E   P++ ++VGVSG+A   + LE C H+  Y   D    C G  C  +    +   +  + A C      G  + V  S +AGRYLC+F YYTS+      S FVHVP
Sbjct:    7 AVVVTGFGPFGEHTVNASWIAVQELEKLGLGDSVDLHVYEIPVEYQTVQRLIPALWEKHSPQLVVHVGVSGMAT-TVTLEKCGHNKGYKGLDNCRFCPGSQCCVEDGPESIDSIIDMDAVCKRVTTLGLDVSVTISQDAGRYLCDFTYYTSLYQSHGRSAFVHVP 170          
The following BLAST results are available for this feature:
BLAST of TCONS_00066448 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PGPI2.273e-2638.79Pyroglutamyl-peptidase 1 OS=Homo sapiens GN=PGPEP1... [more]
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