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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066448 ID=TCONS_00066448|Name=TCONS_00066448|organism=Clytia hemisphaerica|type=transcript|length=1788bp agacTTGCTACCTACCGAATTCCTACCTACCTTCCTAGGTCAGACATTTC GTCTGGAGCTTTTCGCCAGACCAGACGGTACGGTCAAAATTTCGATTGAA CAAAATATGGAGAAGGAAGCTGCAACCACAAACTTGTCACCCAGTATTTT TTTGACAGGTTTTGGAGCCTTTGGTGAGTATAATACAAACCCAAGTTGGC TGGCTGTCCAGGAAGTTTCAAAGATCTGGCCTAACAAAGGAGAGATACAC ATTAAAGAAATCCCAGTAGAATATAAATATGTTGAAGAAAATataccaaa atatttggaaaatataaagCCAAAGATTTCAATCAATGTTGGTGTATCAG GCCTTGCAGAAGATAAACTTCAATTGGAATATTGTGCTCACTCGTCAGAT TATGTGCAACCAGATATCGATGGATGTATTGGCCCAGATTGTTCGAAGGA TGTGTGTTTGACTACAAAGTTCGATCTTGAAAAATTGATTGCTTGTTGTG CTGGCAGTGCTTTACAAGTAGAAAGATCAGACAACGCGGGAAGGTATTTA TGCGAATTCATTTACTACACATCAATGAAGACGGACGAATGTCCATCGCT ATTTGTTCACGTTCCTGTCATCACTGAAGAAATTACATTGGAGAAAATTA CAAAGACTTTAGAAAGTATTATAAAGGCGTGCATACAACAGGTGTAGAAG TTGGTTCCACGATAAGTAGTCCGATTTGTAAAATCTATACTTCATGTATA TAACTTTCTCATGTATGGTTAAATTATGTAATTTCCGCCATCACGGAAAC AAACATTTGATTTGCCCCTACAGATTATAAGAACGTTTACTTCAAAACGG CGTAACttaacaaaatatgaaaaactctTTCGCTAGAAGATGAGTATATC ACACTTTTTAATAGCTACAAAGTGGAACCACTTCAAACGGTCTAAGTCTT ATTAAACTGACTTAGTttccaaaaaacaaatttgaattgGGAGCAAAAAT GAGATGGTGTAAATGTCACTTGGTAACGTTATCATTTTCATATCGATTTA GTTCagtttttagaataatttttggTATATATCTAATTTATTGACATagt gatttttaatttttttagtttttttttactcaaaattttatGATTCCCTC GAATATCTTTTAAACGACCTGGCAACAAGGGTAGTatagaagaattgaaa aatggCAGTTAAGAATTCCATTAAATGACAACTCGGATCGGTTCGAATAA TATTTCAATGACCTTATTACACGGGGAACAAGAAGAGATAAATACTTTAC AGTACTTTTTTTTCAGTTCTTTATTCATGATTttcaccactgcaatgact tctgacattacatcgcGGACCGCAAGTGCAAGTGACTAAAAccaatcaat acgtcactttcaaccaatcagctgttgggtccgtggaagacattgcaatg gttcatatcatgaatattttaaataaaaaaggtCTAAGACCATTTTCCTA CTCATTGGCCTAATTATTTGAATATTATATTTCCCTCCCAACTCGGTGGT TCATGGTGTGTTTTCTAATCTTTTCAAGATAATTATATATTTAAGATTTC TTTAGAAATAATTCTAtagattttttgaagaattttcaatagTGTACCgt gctgaatctaaaaatagattttatttttgacataattatccctctcgatg tgtttgtacgagttccaatcccatcaatcTTTGCGTTagtctcttttgca cgttaattgcatcatttgacaaaagatatataagaANT Run BLAST on NCBI protein sequence of TCONS_00066448-protein >TCONS_00066448-protein ID=TCONS_00066448-protein|Name=TCONS_00066448-protein|organism=Clytia hemisphaerica|type=polypeptide|length=231bp
DLLPTEFLPTFLGQTFRLELFARPDGTVKISIEQNMEKEAATTNLSPSIF LTGFGAFGEYNTNPSWLAVQEVSKIWPNKGEIHIKEIPVEYKYVEENIPK YLENIKPKISINVGVSGLAEDKLQLEYCAHSSDYVQPDIDGCIGPDCSKD VCLTTKFDLEKLIACCAGSALQVERSDNAGRYLCEFIYYTSMKTDECPSL FVHVPVITEEITLEKITKTLESIIKACIQQV Run BLAST on NCBI transcript from alignment at scaffold_455:31300..43451- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066448 ID=TCONS_00066448|Name=TCONS_00066448|organism=Clytia hemisphaerica|type=transcript|length=12152bp|location=Sequence derived from alignment at scaffold_455:31300..43451- (Clytia hemisphaerica) AGACTTGCTACCTACCGAATTCCTACCTACCTTCCTAGGTCAGACATTTC
GTCTGGAGCTTTTCGCCAGACCAGACGGTACGGTCAAAATTTCGATTGAA
CAAAATATGGAGAAGGAAGCTGCAACCACAAACTTGTCACCCAGTATTTT
TTTGACAGGTATATGATAATTCTTGTATCCACATTCCACAAGCTTTTTAC
TTCATTATCATTAATTTGATATTGTTGTTACAGTCGTCTTCATACTTATA
AAAAACTTACCTATTTTTAGGCCGTGGCCAGTAAATTGTTTGTCTGTACA
CAAACCCGATATCTACGGCTAATTTCAAAATTCATTGTCGTAGAGGGTCT
GTTGTCATTGTCTTTTCTGGTTTGAGATTTCTCAAACCAACCGAGGACCC
TGCCGACGCACCGGACCTAACGAACACCGGACACGCGAAAGTCCGGTGTA
AAATGAGAATTTTTTTACCACCGGATAATTTCTACACCGGACTTAAGGAA
GTCGGATGTCCAGTGTCGGAGAAGGATATTTTTCCCACCGGACAATCAAA
ACACCGGACATGACCCAGTCCGGTGCGTCCGGTGTTTCTTAATTTTTTGT
TTCATAAATGTCCGGCGTCCAAAATTCCCTATATGCAACACCGGAATGAC
ACCGGACTTATTGCGTCCGGTGTAGCAAAAGGATACTTTTTGCCACCGGA
CAAATACACCGGACAGTCCGGTGCGTCGGCAGGGTCCTACCAACCGCTGC
GATGGAGTGCTGTTGGAGTTTGCGAGAAATCGGAGGCGATAAGAGAAAAT
GGCCGTCAGAATTGTCAGAAAGTATAGAAGTTTGTCGAAAAAATGTGTTT
TCATGACAAAACTGGCTTCCTATTTTTTAATAAATGGAATAAAAGAGAGA
TCTATCGTTAACTCATTTAAAATGGTGGACAGAGTTGCGGAATGACGAAG
GCGCCCACTGCTTCAAGGGTGGTAACGCCAAAACGCCCAATATGACCAGC
CAACAGAAGGCGAGTTTGTTGCCGCGCGAGTTACGTCATCCGATCCACCG
TAGCGAAAGCGCGAACGACATTTCACAATTATAAGAATATCTTATGTGCT
TAATTCTATTTGACTTTGAGAGCTTCATGAAAGATGAAGAAGTAGAAAGA
TGAAAAATGCGCTGGTTAATTTTTTTTAAATAGGTGTGTTCTATCATTGT
TGAAAGTTGAAGAAATTTCTACCGACGCATAATTTTTTTACAGCCAATTA
AAGGCACAGTCTGCTTATACCGTAGGTCGGGGAAACTTCGGACAGATTTT
CAAGTTTTTTCTTTATTTCTCGAGGAATATGAAAAATAAATCAACCAAAC
TTACTGTACATAACATTTGTGTTATTGTCTTTTAGAAAACAAACGTTACA
AGTAAATCAGCCAGGTCATTATGAAAGAAACACCATCTCAANNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
ACCAAGAGACAAATTCGTGTGAGCCGAGAAATTAACGACATAAAGATACG
AATTGCGCTTAATTGGTCATTAATTTTCTGGGCGTGCGATGGAAGTGTGA
ATGATAAAACTCATCAACCAATCATTAGTTTTTATGGACGTTAAATACAT
GATGAGAGGGTCTTCCTCAGAGTGAATTGGTGAAACAAACACGTTTTATA
AGAACTTTTTCAATTAGACTGTCTCGTTTCCTTATGATACTATCATATCG
TTATATTTCATTAGATATTTTTCTTATTTTTCGCGGGACTTTTGGATGCT
AAGTTCTGAGTATTATTTTTTTCGGAAGCCCATAAACTTTTCCGACTTTC
AAATAAAGTAACAACGGTCTTTTTAAAACACCCTTGTGTCGAATCCCGCT
CCACTTGAAAAATTGGGCCGAGATTTCGTAACCGGTGGGGAAACATCTTT
TCAATTTCAACCTCATTAGGAAATTGAAAAAAGCACTTCAAAACTAGTCA
GAAAGTCTGCCGTATACTATCTTCGCTTTCTGATTTGAATGATGGCGCTG
CGATAGGACGTCAGAGGGAACCCCTCAACCGTTTTTGGTCGACGCATGCG
TCAACTTTTGAAAATTATTCTAAATTGCGCAATATCTGTGGTTGTTTGAT
TAAAAATAAAATGCCCGTTTGTTTGTCTTTAAATAATGTTTTTATCTTAG
TGAGGAAAACCACAGCTTAATTATTGATTTTGACTAACTGCCGTTCAAAA
CAAAATCTAATTCCGAGAATCTAAAAGTTTACGAAGCAATTCTACAATGA
AGATCTTAAAGAAGAAAACCAATCTAATCACATTGAGAAAATAATGGAAG
TCTTTCCTTTTGCCATTAAGAAAAAGTAATATTCGATGCTGTTGCTAATA
TGTATACTCACTTTCTTTTTCATACGGCTGTCCTCCTATAATTATCTACT
TTATCCTTTATCTACAATGGAGTGCAATTTCTACGCTAATACGGCAGAAA
GTATATTGAATAGAATGCTCTCTCATTCCCTGTGTTAAAAACAAAATAGA
GAGAGTTTCGTGGTTGCACGGCTTTTCTAAAATATCCTCTCAATATCTTG
ATTTTGTTTGAGATATAGATCTTTAGTTGATACAACCAAGGGGATGTAAA
TAAACCTTCGAGAAGTCGAAGGCAAAATGGTAGATAAGATACGGTAGAAA
CGAACGAAGATCTGATCAGTGGGTGGTAAAAGATGATTGTTTATTTTCAA
ATTGGGTGATTAATTTTACACTTTTTGAACAAGATCTTTTGGTTTTTACA
TCTGAAAACACAAGTGAGGAAGACATTGTTGTTCATTATGTTTTATATAC
AACAGGAGGAAAAGAAAAAACACTTATAAAATAGTGATTTCTCTTCTCTT
TTTAAAAATAAAAGTTTATGTTAAACTTTTATGTTTTTTTTCTGCCATTT
CAGATTGAATAATTATGGTGTCAGCCCCTCTAATTATGCCAAGACCTTAG
TTATAAATTTAAAAAAGAGGGAATTCTGATTGGTTTTAAATTCAAATTTG
GTGTGACAGTTAATAGTTTCAGCTACATAATTTGTGGGTTCCACTGGACT
CTCTATTTTTTCCACCATCAGATTTTATCAAAGGCAAAAAATAGTTGAGC
TCCAGACCCTGGACTATTCAAAACGACCCCAACGAATTTTGATAAAAATT
TCAACCCTATTTTTTTATGTGTTGTTTTGAGTGAAGTTCCACCGGGGCTG
TGTGAAACATGGGTGTTATAGAGATATAAGCGAGAGAGCTAAATGTTGTT
TCAAGTTTTATTTTTCGCAATATGAGAATTTAGCTTTGATTCCTGTATAC
ATTCCCGTATTACGTATTACGTAAACTACTTTAGTAGTTTCAGTGAAATC
GGAATCAAAGCAGCATAAAGCCATCGCTGTGGACAAATGGGTGTTTTTTA
TACAAGTCAAGTGAAATTTAATGTTTGCTAAAAATATCGCTTTAAATAAC
TTAAGTTACTGTTGACTTTCATATTCAACTTGACTATACTAGGAGGCCAC
TACTTTTTCCTACACAGCCAGCGGAATAATAAAACCCAGTCTTTGATGAG
GTTTCCAATTTATCAAGAGATAGAAAATTGACTTTCTATTCAACAGTAGA
CTACAATTTTTTTTGATTTAGATAATTGTTCGGCGATGGACCAGAATGAC
GTGCGAGGAAGTTAGCGCGATCAAGATCGTGGTTAAAAGTAACCCAATAT
ACTACACAAGGCTTGCCTATGTCTTAGTAGTGAAAGAAATCGGAACGAAA
CGCCGTACTGTAAATCACAAATTAAATACTAATTAAATACTAATTAAATG
TTTTCTTACCAGTGGGACCACGGGCGGATCACGAGTTCGTCGATGCAGGT
TTTATAGATTAGATTAAAAAGAGATGAAAAGAAATAAATAGAAAATACCT
ACCGAGTAAGTAAGAACTTCAATGGTAGACTAGAAACATAATATTGTATC
TAATTCTGCTTCATTACTGCTGTTTACCTTACTTTAAATAAGACACCCCT
ATCTCACAGTGGCCCCGGTGGAATTTTTTCCAACAGAGGGGATAAAAATT
CCCATTGATATTTTTGCCAAATTTTCCAGTGGGGCTGGATGATCTGTGAC
ACAGGGGTGTAATAAGCTTATACCATTTGACGGGTTTGAAATTTTTGAAC
TTATCGTTTTTTGATTTGAGTTAGAGGTTAAGTGTTACGATAACGAAATT
TAGTTTGTTAATACAGCCGAAAATGTATCGACTATATACACCCACTTACG
GATTTAAGAAGATGGAGCAAGTATGTCGGAAGCATACGAAGGAGTGCAAC
ANACGTGCTATAAGAATCTTACACCCGGGCCATAGGGTTAGTCACTAGCG
GATTTAAGACAATAGAGCAACTAAGTCCGAAACATGCGAAGGAGTGCAAC
ACTCGTTAAAAGACAATGAATTTACAATTACAAATATCTTCCTCTGATAA
GTTCGACATGGTCTAAAACCGCCTATAACCCTCCAGTAACATAGTGAATA
AGAGGTTTCTTGAGTCAAAATGATTTGTAAGCCAGCTGTAAGAACCATCG
ACGGGCTGTCATATCACCAAAGCGGCCTTTTTGCTAATGATATTTCGATT
GTCAATTTGCAGTATTTTTTTCACCGGCAACACATTCATTAACATTAGGC
AAAAAAGGAACAGGTAAACAGGTTCTATCACAACCATTCAATACAAAATG
TTTAAGTGGAAACACCCCTGTCTTGACTACCGAGATGATAAAAATGTTTA
ACCTATTTCAGCTATTGTTAATGGGCTGAATGATAATAACTTAGGAGTAG
TTTTCACATCAAAGCCACAATAAATTGATTATATTTATTTTGGAGAAATT
CGGCACCTGGATCTGGCGAAATCACTGATCACTTTAGCTTAGGCGTACAA
ACGAGCACAAAGTTTCGCGAGGCTGAAATAACGCAAAGTTTCTACAAACT
TTCACGAATCGTTAATTTTAAAATTTTTAAACAAATAATGGCTTATTAAA
GGGACAAACACTTCTTGAATGAATTGGATTGCAACCTGTGTCTTTTGACT
TATGAGGCTAAAAGTGCAATGAATCCGTGTGAATCTTATATTTATTACAG
CTTTTTACAGATTTTCTATTTCGTCAAAAACTTTTCGTCTGCATAAACTT
TCGCGAATGGCCTGAAAGAGAAATTTCTTTTCTGCATAAACTTTCGCCAG
CAGAATTTTTCGCGACTTTTGCAAATTTTGGCCTTTTTGGCGAAAGTAAA
TGTCTTTGAAAATTCTGAACGGGCCAAGTTTATGCTCGTGAAAACTTATC
AAAAGAATTGGAAATCTATAGAACCTTAAATCGTAATAAATATCAAATTT
TCGACATCATTTTATAGTTTAATGCCTGTTATAGTCGAAGAGCAACAGTC
TTTATCGGATTTAAGGTATATTTTTCCATTTTAAGGCAATTTTCATTCAA
AAGTTCTCATTTATATCCAACGATNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNTATCTGCACGTTTATCATCAATGTCTGGTGACGTCAGAACA
AAGTTCTTATAATTGCTTCGAAATCACATTATGTTTCTCTTGGGATTCGT
TTAAAGAAGATCTATCTCGGCTGTCGGTAAAGCTATTCTCGCAGTGACTT
TCTCGGCGAATTTATGGAGCAACTTTGAAGAGCTATTGAAGATTGAGGAA
TGCATATTTTTAGCCCAAATAACTNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNCCCAAATAACTTTTAACGTGACATTCAATGTCTCCTCTTTTCATCAC
GTAAATAAAATTATGAGGTCGCCGCTTTAGATATCCAACAAATCTCTTTA
CAATGAAAGATGGTAAAATATCGTGGTTTTCTTCAATTTCTTCTTCGTTC
TTCTTTCGGTGTTCCGTCGCTTGATATGTATCGTCGAGTGTACTTTATTT
CCGAACTGTGAAAGAAAAAAGTACGTTAAAATGTTAAATCCTCGCGAAGT
AATCACTTGTTAAAGATTTTAGTCCGAAGTTTCCTTCATTCCGAAGTTTC
CCCGACCTACGGTACTTACTATGTTTGCTATATCATCTAGGCAAAAAACG
GTAAAAAAAGACACAAACACAATTTTTTTATGAGTGTGGTTATGATTTCT
TTGCTTGCGGCCGCGTACAGGAACTCGCCAAATGTTCCTAACTGATAGAG
GGTAATGGGAAAATAATTTTCTATTAGACAATTTTGAATATGTCTTTGTT
ACTTTTCAGCTTTTAGTTTGGCTCAAAAACATTAAAAAAGCAACCACATG
CTTAGAAAGTGACCCTCGATCATGGACCCCATCCTTTTGTTTACAATTGT
CGTAACTTTGGCTGCCATTTTATTTTAAAATTATACTTCATTGCAGAGGT
CTCCGTACGGGAATTTTTTTATCAAACAGACAATGCACACAGAGTGTACT
ACTACGATAATCGTGAGATACACTCTGGTACAGAGTAGTGGATTGTTAAT
GTTTCAAAAAATAAAGAAAAAATTCAAAATGTCTGGGACCAACTTTTTGA
TATGTTTCTTACTCAATTTGAGGGTGCTTGACAAGCTTGGTAACATTTAA
ATTCCGAATCAGCACCCTCAAACTGACCAAAATCAATTCTAAAAGCTTGG
TCACTGACATTTTGAAAAAAAGTGAAACATTTTGGTGGCACTGACCATGG
CCAGATTCACGCAATCTGTCAAAACTTTGTTTGTGTGTTTCAACAAAATC
GCAAACTAGTCTGACACTTTCTAGTTCGACGACAAAACAGTCCAAATCCA
GCTGAAATGTAATCAGCTTGCGAGTATGTATCTATTCTTGAAAATAAGAG
GCTGATAGTCCCATGTTCTTTTATCAATGACGTGCTTTTTTTCCTTCTGG
TAGTGTGGCCAAAAATAACCTTTTCCTACTTTTCACTAGCTAATCAGTAG
ACTTTCTCCTTCCCACAACAAAACGTATTTTTTATTTTCATATTTGACTA
AAGAACAAATTTATTTTAAGCCAAGTCTGTGTGTAACAGATATGCAGGCT
TATACCTGCATTATTTCAGAATTTTAATATTTTTTCCTCTGACAAAAAAA
TATGACCATTGATGGTACTGTTTAAAATAGAATTTCATGATTTGCTGCCA
TTTTTGTACAGGTGTGTCTGTGGTTGAATACTTTCTATATTGGTTTTATG
TTTTTATTCTGAAGGTAGAGAGACCAGCAGAGGGAAGGGGGTCAGTACTA
AAACCTCGGAAATTATGATGTTTAGTGATGTGGTGGTATACGCAAAAAAA
CTCTTTTTAATATTTTAGTATAAACCACAGGGAAATAAAATGCCAAAAAG
GTGGCATCCAGACTAAAATTTAGTACATTTGTATATACTGAAATTAGTGA
TTTCATCATTTTTTTAATCTTTTTCAAAAATGTTCGTGATTTTTCAGAAC
TTTTCAAAAAAGAATTTGAAATTTTTTCATTCTAAGAAAGTGTCCAGAGT
TCAATATCTTTGCATTCAGTCAAATGTGTAAAGGTATCAATTTTGGCCTA
TGTGTCAAAATCTCTCCAAAAACATGGTTACTTCTCTAAAATTGGGTGGT
GGTATGCAAAATGTTCTCATATATGTCCAAGATTTTAGTACGGACCCCTT
TGAGACCAGATATATTTCAAGATATCTTTTAACTTGTCTTTGTTGCGGCA
AGTATATTTGTCTAGGATGATTCTTTATATACATGTACATTGTTTTTCTT
TCAGGTTTTGGAGCCTTTGGTGAGTATAATACAAACCCAAGTTGGCTGGC
TGTCCAGGTTTGTTTTACCTGGTTTTATTTGTATAAGAAAAATTTTACTG
ATTTGTTAGTTTATATAACTGTTATTTGTTAACTTTTAATGATTGCCTGT
CATGCTTCAGTCCAAAACATTCTTTCCATTGCCCTTATAGTAAAAAGATT
GTACACTCTTTTTTTAAACGCCTCCTCAAATAAACGCCCCCTCGAATAAA
CGCCCTCCTTTGAGGAAAAATTTTCAAGAGCGCCCCTTCGAATAAATGCC
TCCCCTCTAGGAGGGGCGTTTATTTGAAACAATTAGCTGTAAGAAAGAAT
AATTTGAAAGAAAACATCCCTAAATGACGTATTTGTATTCAAATAATAAA
GAAAAGGCAAAAGTAAGGTAGCAATTCACACTAATAAAATGAACTTGGTT
CTAAGTTATTTAATAAACGCCCCTTCTTTTAAACGCCCCTTCTAAAAATT
GAAAGATTTAATAAACGCCCGGGACGTTTATTCGAAGTAATACGGTATGT
CCCCTTGTTATCTGAAATACCCAAACCTATTTGGACCATGCTTTAGTTAG
ATCACCATTAAAGTTACAAGGTTAAACAGATCAAAGCATTAGCATTTTTC
TATCATTTAATTCATTTCAAACTTTCCCCCTAATTGTAAATTGTCTTCAC
AATTTCTTTAGGAAGTTTCAAAGATCTGGCCTAACAAAGGAGAGATACAC
ATTAAAGAAATCCCAGTAGAATATAAATATGTTGAAGAAAATATACCAAA
ATATTTGGAAAATATAAAGCCAAAGGTATATTATTTATTATTTTATATCA
AGAGATTACAGACTATTAGTAAGTAATAAAGTTTCTTAAGTAATTTATTA
TATTTGAGCTCTTTATTCATTCATAATATGATTTTATATAGATTTCAATC
AATGTTGGTGTATCAGGCCTTGCAGAAGATAAACTTCAATTGGAATATTG
TGCTCACTCGTCAGATTATGTGCAACCAGATATCGATGGATGTATTGGCC
CAGATTGTTCGAAGGATGGTAAATGCTCTTTTTCGTTATCATGATCTATA
AAATCATTACCGTGTTAAAATGTTTTAATGTCTAATAACTACAGCAATTA
TTTCGAAAAGAACTTTATATCTAATTCCGGCTGGCAAATAGAACAAATAT
TTGCAAATTTTAGGTTGGCGGCTGTTTCTGTGAAACATACACATTGTTTT
TCTCTTATAGCCTTATAGAAGCATATCTAGATTCAATGGAAAGTGCCTTG
AAGATGGCTCCATCTCGTTTACAAGTGACGCAATCTTAACTATATATAAT
CTGAGCAAAGAGAACAAAATTACTTTCTTTTAGTGTGTTTGACTACAAAG
TTCGATCTTGAAAAATTGATTGCTTGTTGTGCTGGCAGTGCTTTACAAGT
AGAAAGATCAGACAACGCGGGAAGGTGAGTTGATGTTATAATGTTTTCTT
TTACTAGTGAGCATTTATTCTTTTAAACATAAAACGGCTTTTTTCAAGCG
TATACTTCCCAGCTGTCGTCTACCTTTAAATGTGTTGACGTTTATTTTAA
AATTGTATTTTGAAAATGAACCTAAAGTCTATCTCAATATCATTTGCAGC
GGAGACAAAAAAAGCTGTAACTTTTGATAGAATTCGAATTAGAAAACGGT
TTTATGCTCGTTTAAAAGATAATCAAAGAGGAATATTATCAACAAAAAAA
AAATTAAAAAATAGGAAAATGAAGATAAATAATGCTANAAATTTAAAAAT
GGAAAAATGAAGATGAATAATGAAGAATAAGAAAATCAACTTCTTATAGA
AAATGCTCTGATCTTCATTTTTATATCAGAGATTCTTCAATCTTAGAACG
TCATAAATGGGGAAAAAATTCAAAAAATATTTATTNNTGCACTCAATTGT
GACAATTATGACAAATTAAAAAAGAAAAACTTTGCATTTAGCAAAATAAC
CATTTTTGAAAAAATTATTGGGGGGGGGGCATAGCCCCCCCAGTTGCTAC
GGCACTGTTTAGTGAGAAGCTCTCGACTATATCTTTCGATTGAAAAAAGT
TTTTTGAAAGATTTTTTCACATTGATGATATTGATGTTCTAAGATCAAAG
AATCTCTCGTGTGAAAATGATGATCATAGCACAATTATTGAAGAAGTTGA
TTTTCTTCTTCATTTTCAATCATCATTTTTCGATTTTTTTTGAATTTTTC
TTTTGTTGATAATATTCCACTCATGTTTGTCTTTTCAACAAGTACAACAC
CTAATTCTATCTAATTCGAATTCTATCAAAAGTTACAGCCTTTTTTGTCT
CCGCTGCAAATTATATTGAGACAGATTTTAGACACTTTATTTCGATCAAG
CCACTTCCCTAAAAAACTTCAAGCTGACGAGAACTATAACGTTCGTACAT
ACTGAGGAGGTGTAACTCCTTAATGGTTCAACATATACAAAGTAAATCGA
TTTTCAGGTATTTATGCGAATTCATTTACTACACATCAATGAAGACGGAT
GAATGTCCATCGCTATTCGTCCACGTGCCTGTCATCACTGAAGANTCGAT
TTTTCAGGTATTTATGTGAATTCATTTACTACACATCAATGAAGACGGAC
GAATGTCCATCGCTATTTGTTCACGTTCCTGTCATCACTGAAGAAATTAC
ATTGGAGAAAATTACAAAGACTTTAGAAAGTATTATAAAGGCGTGCATAC
AACAGGTGTAGAAGTTGGTTCCACGATAAGTAGTCCGATTTGTAAAATCT
ATACTTCATGTATATAACTTTCTCATGTATGGTTAAATTATGTAATTTCC
GCCATCACGGAAACAAACATTTGATTTGCCCCTACAGATTATAAGAACGT
TTACTTCAAAACGGCGTAACTTAACAAAATATGAAAAACTCTTTCGCTAG
AAGATGAGTATATCACACTTTTTAATAGCTACAAAGTGGAACCACTTCAA
ACGGTCTAAGTCTTATTAAACTGACTTAGTTTCCAAAAAACAAATTTGAA
TTGGGAGCAAAAATGAGATGGTGTAAATGTCACTTGGTAACGTTATCATT
TTCATATCGATTTAGTTCAGTTTTTAGAATAATTTTTGGTATATATCTAA
TTTATTGACATAGTGATTTTTAATTTTTTTAGTTTTTTTTTACTCAAAAT
TTTATGATTCCCTCGAATATCTTTTAAACGACCTGGCAACAAGGGTAGTA
TAGAAGAATTGAAAAATGGCAGTTAAGAATTCCATTAAATGACAACTCGG
ATCGGTTCGAATAATATTTCAATGACCTTATTACACGGGGAACAAGAAGA
GATAAATACTTTACAGTACTTTTTTTTCAGTTCTTTATTCATGATTTTCA
CCACTGCAATGACTTCTGACATTACATCGCGGACCGCAAGTGCAAGTGAC
TAAAACCAATCAATACGTCACTTTCAACCAATCAGCTGTTGGGTCCGTGG
AAGACATTGCAATGGTTCATATCATGAATATTTTAAATAAAAAAGGTCTA
AGACCATTTTCCTACTCATTGGCCTAATTATTTGAATATTATATTTCCCT
CCCAACTCGGTGGTTCATGGTGTGTTTTCTAATCTTTTCAAGATAATTAT
ATATTTAAGATTTCTTTAGAAATAATTCTATAGATTTTTTGAAGAATTTT
CAATAGTGTACCGTGCTGAATCTAAAAATAGATTTTATTTTTGACATAAT
TATCCCTCTCGATGTGTTTGTACGAGTTCCAATCCCATCAATCTTTGCGT
TAGTCTCTTTTGCACGTTAATTGCATCATTTGACAAAAGATATATAAGAA
NT Coding sequence (CDS) from alignment at scaffold_455:31300..43451- >TCONS_00066448 ID=TCONS_00066448|Name=TCONS_00066448|organism=Clytia hemisphaerica|type=CDS|length=4872bp|location=Sequence derived from alignment at scaffold_455:31300..43451- (Clytia hemisphaerica) ATCAATGAAGACGGACGAATGTCCATCGCTATTTGTTCACGTTCCTGTCA TCACTGAAGAAATTACATTGGAGAAAATTACAAAGACTTTAGAAAGTATT ATAAAGGCGTGCATACAACAGGTGTAGGTATTTATGCGAATTCATTTACT ACACTGTGTTTGACTACAAAGTTCGATCTTGAAAAATTGATTGCTTGTTG TGCTGGCAGTGCTTTACAAGTAGAAAGATCAGACAACGCGGGAAGATTTC AATCAATGTTGGTGTATCAGGCCTTGCAGAAGATAAACTTCAATTGGAAT ATTGTGCTCACTCGTCAGATTATGTGCAACCAGATATCGATGGATGTATT GGCCCAGATTGTTCGAAGGATGGAAGTTTCAAAGATCTGGCCTAACAAAG GAGAGATACACATTAAAGAAATCCCAGTAGAATATAAATATGTTGAAGAA AATATACCAAAATATTTGGAAAATATAAAGCCAAAGGTTTTGGAGCCTTT GGTGAGTATAATACAAACCCAAGTTGGCTGGCTGTCCAGGACTTGCTACC TACCGAATTCCTACCTACCTTCCTAGGTCAGACATTTCGTCTGGAGCTTT TCGCCAGACCAGACGGTACGGTCAAAATTTCGATTGAACAAAATATGGAG AAGGAAGCTGCAACCACAAACTTGTCACCCAGTATTTTTTTGACAGATCA ATGAAGACGGACGAATGTCCATCGCTATTTGTTCACGTTCCTGTCATCAC TGAAGAAATTACATTGGAGAAAATTACAAAGACTTTAGAAAGTATTATAA AGGCGTGCATACAACAGGTGTAGGTATTTATGCGAATTCATTTACTACAC TGTGTTTGACTACAAAGTTCGATCTTGAAAAATTGATTGCTTGTTGTGCT GGCAGTGCTTTACAAGTAGAAAGATCAGACAACGCGGGAAGATTTCAATC AATGTTGGTGTATCAGGCCTTGCAGAAGATAAACTTCAATTGGAATATTG TGCTCACTCGTCAGATTATGTGCAACCAGATATCGATGGATGTATTGGCC CAGATTGTTCGAAGGATGGAAGTTTCAAAGATCTGGCCTAACAAAGGAGA GATACACATTAAAGAAATCCCAGTAGAATATAAATATGTTGAAGAAAATA TACCAAAATATTTGGAAAATATAAAGCCAAAGGTTTTGGAGCCTTTGGTG AGTATAATACAAACCCAAGTTGGCTGGCTGTCCAGGACTTGCTACCTACC GAATTCCTACCTACCTTCCTAGGTCAGACATTTCGTCTGGAGCTTTTCGC CAGACCAGACGGTACGGTCAAAATTTCGATTGAACAAAATATGGAGAAGG AAGCTGCAACCACAAACTTGTCACCCAGTATTTTTTTGACAGATCAATGA AGACGGACGAATGTCCATCGCTATTTGTTCACGTTCCTGTCATCACTGAA GAAATTACATTGGAGAAAATTACAAAGACTTTAGAAAGTATTATAAAGGC GTGCATACAACAGGTGTAGGTATTTATGCGAATTCATTTACTACACTGTG TTTGACTACAAAGTTCGATCTTGAAAAATTGATTGCTTGTTGTGCTGGCA GTGCTTTACAAGTAGAAAGATCAGACAACGCGGGAAGATTTCAATCAATG TTGGTGTATCAGGCCTTGCAGAAGATAAACTTCAATTGGAATATTGTGCT CACTCGTCAGATTATGTGCAACCAGATATCGATGGATGTATTGGCCCAGA TTGTTCGAAGGATGGAAGTTTCAAAGATCTGGCCTAACAAAGGAGAGATA CACATTAAAGAAATCCCAGTAGAATATAAATATGTTGAAGAAAATATACC AAAATATTTGGAAAATATAAAGCCAAAGGTTTTGGAGCCTTTGGTGAGTA TAATACAAACCCAAGTTGGCTGGCTGTCCAGGACTTGCTACCTACCGAAT TCCTACCTACCTTCCTAGGTCAGACATTTCGTCTGGAGCTTTTCGCCAGA CCAGACGGTACGGTCAAAATTTCGATTGAACAAAATATGGAGAAGGAAGC TGCAACCACAAACTTGTCACCCAGTATTTTTTTGACAGATCAATGAAGAC GGACGAATGTCCATCGCTATTTGTTCACGTTCCTGTCATCACTGAAGAAA TTACATTGGAGAAAATTACAAAGACTTTAGAAAGTATTATAAAGGCGTGC ATACAACAGGTGTAGGTATTTATGCGAATTCATTTACTACACTGTGTTTG ACTACAAAGTTCGATCTTGAAAAATTGATTGCTTGTTGTGCTGGCAGTGC TTTACAAGTAGAAAGATCAGACAACGCGGGAAGATTTCAATCAATGTTGG TGTATCAGGCCTTGCAGAAGATAAACTTCAATTGGAATATTGTGCTCACT CGTCAGATTATGTGCAACCAGATATCGATGGATGTATTGGCCCAGATTGT TCGAAGGATGGAAGTTTCAAAGATCTGGCCTAACAAAGGAGAGATACACA TTAAAGAAATCCCAGTAGAATATAAATATGTTGAAGAAAATATACCAAAA TATTTGGAAAATATAAAGCCAAAGGTTTTGGAGCCTTTGGTGAGTATAAT ACAAACCCAAGTTGGCTGGCTGTCCAGGACTTGCTACCTACCGAATTCCT ACCTACCTTCCTAGGTCAGACATTTCGTCTGGAGCTTTTCGCCAGACCAG ACGGTACGGTCAAAATTTCGATTGAACAAAATATGGAGAAGGAAGCTGCA ACCACAAACTTGTCACCCAGTATTTTTTTGACAGATCAATGAAGACGGAC GAATGTCCATCGCTATTTGTTCACGTTCCTGTCATCACTGAAGAAATTAC ATTGGAGAAAATTACAAAGACTTTAGAAAGTATTATAAAGGCGTGCATAC AACAGGTGTAGGTATTTATGCGAATTCATTTACTACACTGTGTTTGACTA CAAAGTTCGATCTTGAAAAATTGATTGCTTGTTGTGCTGGCAGTGCTTTA CAAGTAGAAAGATCAGACAACGCGGGAAGATTTCAATCAATGTTGGTGTA TCAGGCCTTGCAGAAGATAAACTTCAATTGGAATATTGTGCTCACTCGTC AGATTATGTGCAACCAGATATCGATGGATGTATTGGCCCAGATTGTTCGA AGGATGGAAGTTTCAAAGATCTGGCCTAACAAAGGAGAGATACACATTAA AGAAATCCCAGTAGAATATAAATATGTTGAAGAAAATATACCAAAATATT TGGAAAATATAAAGCCAAAGGTTTTGGAGCCTTTGGTGAGTATAATACAA ACCCAAGTTGGCTGGCTGTCCAGGACTTGCTACCTACCGAATTCCTACCT ACCTTCCTAGGTCAGACATTTCGTCTGGAGCTTTTCGCCAGACCAGACGG TACGGTCAAAATTTCGATTGAACAAAATATGGAGAAGGAAGCTGCAACCA CAAACTTGTCACCCAGTATTTTTTTGACAGATCAATGAAGACGGACGAAT GTCCATCGCTATTTGTTCACGTTCCTGTCATCACTGAAGAAATTACATTG GAGAAAATTACAAAGACTTTAGAAAGTATTATAAAGGCGTGCATACAACA GGTGTAGGTATTTATGCGAATTCATTTACTACACTGTGTTTGACTACAAA GTTCGATCTTGAAAAATTGATTGCTTGTTGTGCTGGCAGTGCTTTACAAG TAGAAAGATCAGACAACGCGGGAAGATTTCAATCAATGTTGGTGTATCAG GCCTTGCAGAAGATAAACTTCAATTGGAATATTGTGCTCACTCGTCAGAT TATGTGCAACCAGATATCGATGGATGTATTGGCCCAGATTGTTCGAAGGA TGGAAGTTTCAAAGATCTGGCCTAACAAAGGAGAGATACACATTAAAGAA ATCCCAGTAGAATATAAATATGTTGAAGAAAATATACCAAAATATTTGGA AAATATAAAGCCAAAGGTTTTGGAGCCTTTGGTGAGTATAATACAAACCC AAGTTGGCTGGCTGTCCAGGACTTGCTACCTACCGAATTCCTACCTACCT TCCTAGGTCAGACATTTCGTCTGGAGCTTTTCGCCAGACCAGACGGTACG GTCAAAATTTCGATTGAACAAAATATGGAGAAGGAAGCTGCAACCACAAA CTTGTCACCCAGTATTTTTTTGACAGATCAATGAAGACGGACGAATGTCC ATCGCTATTTGTTCACGTTCCTGTCATCACTGAAGAAATTACATTGGAGA AAATTACAAAGACTTTAGAAAGTATTATAAAGGCGTGCATACAACAGGTG TAGGTATTTATGCGAATTCATTTACTACACTGTGTTTGACTACAAAGTTC GATCTTGAAAAATTGATTGCTTGTTGTGCTGGCAGTGCTTTACAAGTAGA AAGATCAGACAACGCGGGAAGATTTCAATCAATGTTGGTGTATCAGGCCT TGCAGAAGATAAACTTCAATTGGAATATTGTGCTCACTCGTCAGATTATG TGCAACCAGATATCGATGGATGTATTGGCCCAGATTGTTCGAAGGATGGA AGTTTCAAAGATCTGGCCTAACAAAGGAGAGATACACATTAAAGAAATCC CAGTAGAATATAAATATGTTGAAGAAAATATACCAAAATATTTGGAAAAT ATAAAGCCAAAGGTTTTGGAGCCTTTGGTGAGTATAATACAAACCCAAGT TGGCTGGCTGTCCAGGACTTGCTACCTACCGAATTCCTACCTACCTTCCT AGGTCAGACATTTCGTCTGGAGCTTTTCGCCAGACCAGACGGTACGGTCA AAATTTCGATTGAACAAAATATGGAGAAGGAAGCTGCAACCACAAACTTG TCACCCAGTATTTTTTTGACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00066448-exon-scaffold_455-1575043694:43294..43451 | TCONS_00066448-exon-scaffold_455-1575043694:43294..43451 | Clytia hemisphaerica | exon |
TCONS_00066448-exon-scaffold_455-1575043694:35095..35147 | TCONS_00066448-exon-scaffold_455-1575043694:35095..35147 | Clytia hemisphaerica | exon |
TCONS_00066448-exon-scaffold_455-1575043694:34327..34440 | TCONS_00066448-exon-scaffold_455-1575043694:34327..34440 | Clytia hemisphaerica | exon |
TCONS_00066448-exon-scaffold_455-1575043694:34084..34210 | TCONS_00066448-exon-scaffold_455-1575043694:34084..34210 | Clytia hemisphaerica | exon |
TCONS_00066448-exon-scaffold_455-1575043694:33678..33768 | TCONS_00066448-exon-scaffold_455-1575043694:33678..33768 | Clytia hemisphaerica | exon |
TCONS_00066448-exon-scaffold_455-1575043694:32618..32644 | TCONS_00066448-exon-scaffold_455-1575043694:32618..32644 | Clytia hemisphaerica | exon |
TCONS_00066448-exon-scaffold_455-1575043694:31300..32517 | TCONS_00066448-exon-scaffold_455-1575043694:31300..32517 | Clytia hemisphaerica | exon |
TCONS_00066448-exon-scaffold_455-1510915933:43294..43451 | TCONS_00066448-exon-scaffold_455-1510915933:43294..43451 | Clytia hemisphaerica | exon |
TCONS_00066448-exon-scaffold_455-1510915933:35095..35147 | TCONS_00066448-exon-scaffold_455-1510915933:35095..35147 | Clytia hemisphaerica | exon |
TCONS_00066448-exon-scaffold_455-1510915933:34327..34440 | TCONS_00066448-exon-scaffold_455-1510915933:34327..34440 | Clytia hemisphaerica | exon |
TCONS_00066448-exon-scaffold_455-1510915933:34084..34210 | TCONS_00066448-exon-scaffold_455-1510915933:34084..34210 | Clytia hemisphaerica | exon |
TCONS_00066448-exon-scaffold_455-1510915933:33678..33768 | TCONS_00066448-exon-scaffold_455-1510915933:33678..33768 | Clytia hemisphaerica | exon |
TCONS_00066448-exon-scaffold_455-1510915933:32618..32644 | TCONS_00066448-exon-scaffold_455-1510915933:32618..32644 | Clytia hemisphaerica | exon |
TCONS_00066448-exon-scaffold_455-1510915933:31300..32517 | TCONS_00066448-exon-scaffold_455-1510915933:31300..32517 | Clytia hemisphaerica | exon |
TCONS_00066448-exon-scaffold_455-1491911889:43294..43451 | TCONS_00066448-exon-scaffold_455-1491911889:43294..43451 | Clytia hemisphaerica | exon |
TCONS_00066448-exon-scaffold_455-1491911889:35095..35147 | TCONS_00066448-exon-scaffold_455-1491911889:35095..35147 | Clytia hemisphaerica | exon |
TCONS_00066448-exon-scaffold_455-1491911889:34327..34440 | TCONS_00066448-exon-scaffold_455-1491911889:34327..34440 | Clytia hemisphaerica | exon |
TCONS_00066448-exon-scaffold_455-1491911889:34084..34210 | TCONS_00066448-exon-scaffold_455-1491911889:34084..34210 | Clytia hemisphaerica | exon |
TCONS_00066448-exon-scaffold_455-1491911889:33678..33768 | TCONS_00066448-exon-scaffold_455-1491911889:33678..33768 | Clytia hemisphaerica | exon |
TCONS_00066448-exon-scaffold_455-1491911889:32618..32644 | TCONS_00066448-exon-scaffold_455-1491911889:32618..32644 | Clytia hemisphaerica | exon |
TCONS_00066448-exon-scaffold_455-1491911889:31300..32517 | TCONS_00066448-exon-scaffold_455-1491911889:31300..32517 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_455 | supercontig | scaffold_455:31300..43451 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Cellular Component
Term | Definition |
GO:0005829 | cytosol |
Vocabulary: Molecular Function
Term | Definition |
GO:0016920 | pyroglutamyl-peptidase activity |
Vocabulary: Biological Process
Term | Definition |
GO:0006508 | proteolysis |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
biological_process |
GO:0006508 |
proteolysis |
cellular_component |
GO:0005829 |
cytosol |
molecular_function |
GO:0016920 |
pyroglutamyl-peptidase activity |
Blast
BLAST of TCONS_00066448 vs. Swiss-Prot (Human)
Match: PGPI (Pyroglutamyl-peptidase 1 OS=Homo sapiens GN=PGPEP1 PE=1 SV=1) HSP 1 Score: 108.227 bits (269), Expect = 2.273e-26 Identity = 64/165 (38.79%), Postives = 92/165 (55.76%), Query Frame = 2
Query: 143 SIFLTGFGAFGEYNTNPSWLAVQEVSKI-WPNKGEIHIKEIPVEYKYVEENIPKYLENIKPKISINVGVSGLAEDKLQLEYCAHSSDYVQPD-IDGCIGPDCSKDVCLTTKFDLEKLIACCA-----GSALQVERSDNAGRYLCEFIYYTSMKTDECPSLFVHVP 616
++ +TGFG FGE+ N SW+AVQE+ K+ + ++H+ EIPVEY+ V+ IP E P++ ++VGVSG+A + LE C H+ Y D C G C + + + + A C G + V S +AGRYLC+F YYTS+ S FVHVP
Sbjct: 7 AVVVTGFGPFGEHTVNASWIAVQELEKLGLGDSVDLHVYEIPVEYQTVQRLIPALWEKHSPQLVVHVGVSGMAT-TVTLEKCGHNKGYKGLDNCRFCPGSQCCVEDGPESIDSIIDMDAVCKRVTTLGLDVSVTISQDAGRYLCDFTYYTSLYQSHGRSAFVHVP 170
The following BLAST results are available for this feature:
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