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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063519 ID=TCONS_00063519|Name=TCONS_00063519|organism=Clytia hemisphaerica|type=transcript|length=1965bp
CTGTAAGTCAGCTGAACAGACTTTAGAAGTTTACTTTCAATACAAAAACG
TTCCGGCACGAGCGAGCACAGATCTTTCATCAACACATTCGATCATCGCA
CATCAACAAGCTACCACCATTGGTTTGTTACACGGCAACGACCACTTATT
TGAACAACATAGAGGAGGAGGCACGTGTTCGGTGTACGGAGGAATGACAA
TGCCTGAACGATCGGTTGAAAGCCCTATCGACAGTCAAAACATGAAACCT
GGAACACCACCCAAGAGACGTCGTGAACGAACTACCTTCACTAAAGCACA
ACTCGATGTATTAGAAGATCTCTTTGGCAAAACAATGTACCCTGATGTTT
TCATGAGAGAAGAAGTTGCCAAAAAAATCAGTCTGGCTGAAGCTCGAGTA
CAGGTCTGGTTCAAAAACAGACGTGCCAAATTTCGTCGGTCACGAGAAAG
CCCAGGACGACACTTCGATCACACCAAATTCTTACAACGTGATAAATTCT
TACAAGACGATTTGGTTCGTTCATTCAAATCAGGACCAAGCAGTTTCTTA
CCACCATATCAATATCAAAACCCGTTATGGAAATACCCACCACCTGCAAC
AGAGCACAGCCCAACATACGGTACGTCACAGGTAGTAGACGATTCTTTTT
ATAGACAATCAACGAACGGTTATAACTCAGTTTCGCCTTACACCGACTAC
CCTTCGTCTTACTCCACTTCACCACGTCAACAATATTTCTCCACACAATA
CTACAGTCCACCCGGTGGTAACCATGACTACAACTCATGCGCACCAAGCA
CCACTACATCGAACACTGTACCTAGTATGTCCTTTTCACCTCACGAAAAC
ACAACGAAAACAGATCTCAATTTACCGAACACTTTTCAATGGAGCGGCAG
TGGTGGCACTCCGCAATACGGAATGACAGCCGGTGGATCAAACATATAAA
CATTCAGGAGTCGTCTTTGACAACTCAAAACTAAAAACGAGAATACAAAA
CTAAAATATGGGGGACCATTCTCTTGACACAGACGCGCAAACGGCAATCA
GAATCAACCATCATATGGGTTGGAGACTTGGATAATCCTGGGAAAAGAAT
GCCGCACTCAAGCGGGTTTTTGCTCTTCGATTATTCTTCGTATTACTGGT
CGAGCAGTCAGTCGGTATTTTACTGACAGAGGTATCTAGTTCCGATTTTA
ATTACTCGAAGGATGAAACTTTTAAAGTTTTTATAGAAAATGTAAAAAAC
TAACATCAGATAATTGTGTAATTGAGAATGGAACGCCCGTCTACCGGATG
GAGTTGGAATGCAACAGGAACATTATGAAAAGAAGAAGATTTGTTTTCTT
TCTTCGAAGAACAAAGAAAGAGATTCAAACTTGATACATTTTCATAAATA
AACAAAAACAACGTCTTGAACTATTTTCCCTAGAAACAAACTAAAAATAC
TTGTTTTATTTTTACGTATTATTTGAACCATATTTTTAAATACTTTTATC
CAATTTTTTTTTATTTTGGGAATTGATGACCAATTATTAAGTTGAACCCT
GAAATCACCAAGTTTTTAGTTTTCGATTTTTACAGGTTTTTAATGAGATC
TTTTATTTTCTTTCGTGTACATATATACTCATGACATTTATTTTTCTTCT
AAGAGCATCGTTTTATTTTACATTTATTTTTTTAAGTTGTATTTTTTTCT
CGTCCTTATTTTTCTCATATATACTTTCATTCGATATTTCTTTTTAAGGA
AACAATTTTAATGTAGCTAGGGAAATAATTCTAGGTGGCTGCTGTCTTGA
CGACTGTCAGCTTTTAATAGCAATTTATTTGTAATGTTGTACATAAAATG
TGTATAATGCTAGTGGGTTTATAACATGATGATAATAGTTACATATTGAA
AAAAGAACTCATTCTATTGTATACACAGacaattttaattcaaaagaccg
aacaaataaaaacaa Run BLAST on NCBI protein sequence of Otx >TCONS_00063519-protein ID=TCONS_00063519-protein|Name=Otx|organism=Clytia hemisphaerica|type=polypeptide|length=315bp
CKSAEQTLEVYFQYKNVPARASTDLSSTHSIIAHQQATTIGLLHGNDHLF
EQHRGGGTCSVYGGMTMPERSVESPIDSQNMKPGTPPKRRRERTTFTKAQ
LDVLEDLFGKTMYPDVFMREEVAKKISLAEARVQVWFKNRRAKFRRSRES
PGRHFDHTKFLQRDKFLQDDLVRSFKSGPSSFLPPYQYQNPLWKYPPPAT
EHSPTYGTSQVVDDSFYRQSTNGYNSVSPYTDYPSSYSTSPRQQYFSTQY
YSPPGGNHDYNSCAPSTTTSNTVPSMSFSPHENTTKTDLNLPNTFQWSGS
GGTPQYGMTAGGSNI Run BLAST on NCBI transcript from alignment at scaffold_391:81782..86878- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063519 ID=TCONS_00063519|Name=TCONS_00063519|organism=Clytia hemisphaerica|type=transcript|length=5097bp|location=Sequence derived from alignment at scaffold_391:81782..86878- (Clytia hemisphaerica)
CTGTAAGTCAGCTGAACAGACTTTAGAAGTTTACTTTCAATACAAAAGTA
GGCGACAACACTGTTTAAGCTTTAAAAACTTTTTCTGTAACAATCTGTTT
TTATTATCCACATTAAATCGAGTTTTAAATTATAAAGCCTTTAGGATATT
TAATTTGCTTAGAGGGTCATTAATGAGTATTTGTAATATGGTTCCGGATT
CGATAGTCTGCAAGAAGATTTTCACATTTTTACGCATAGAGACATGATTG
ATAAAAAATTCTGACCTATAATATTTTCTGAGAAAAAAAACCAAAGTACA
AATCTAGTGTAATTGAAGTTGTTCTTATTGCATCTATTGAAACGTTTCAT
TTGATCATTGATGGTTAAACTACCTTCTAAAAACGTGTGAAAACCACTTC
TTTCTATGATACATTTCTTATTTAGACAGAAAAAATGTTTTCGAGGGACA
AAAGTGAGCGAGAAGTATCGATGACATTTTACTTTTTACAAAACACATTT
CATCGCTTCATTGTTACGTAAAAGTCGCAAAAATATTGTTAAGAATTTCT
TTTAATTTCGGAATGATTTCAGTGCAAGCGAAAATCATACGAAAAAATCA
CCACCGCCCAAACTAAAATTCAGAGAAATATTTGAATCGTATTGTGTATT
GTTTCAAATTAATAATATTCTAACATCGTTATGTTGTTTAGACGTTCCGG
CACGAGCGAGCACAGATCTTTCATCAACACATTCGATCATCGCACATCAA
CAAGCTACCACCATTGGTTTGTTACACGGCAACGACCACTTATTTGAACA
ACATAGAGGAGGAGGCACGTGTTCGGTGTACGGAGGAATGACAATGCCTG
AACGATCGGTTGAAAGCCCTATCGACAGTCAAAACATGAAACCTGGAAGT
AAGTTACTTTTTGTTCAAAGTTAACATATCTATAACATTCTAAAGCTACA
GCATGTAGAAAGGCCCAACTAAGTTGTCATTAACCTTTTGGAGCAATGTG
CATAGAAAGTCTCGATGTTTTAATGAAGATCATGTCCAAAGACTAAGTTA
CATTACATTCATAAGACACTATCCTTATCTTATTATCAATCTCTTAATTG
GTTAGAGGATCATCGAAGCTTTCATTAAAACTAACCATTTTATGGACTAA
ATAAAGGGAAGAGGAAGAGAGTCAGGAAACTAACAAAATGTTTTAAAAAT
GAATTGATATATAAAATACGTCATTTGCGTTAATCTTGTCAAATTCATGA
AACAGGGGCCGATAAATGCACTCGCTTTTCACNGGTCAGGAAACTAACAA
AATCTTTTAAAAATGAATTGATATATAAAATACGTCATTTGCGTTAATCT
TGTCAAATTCATGAAACAGGGGCCGATAAATGCACTCGCTTTTCACTCGA
CGTTCTATATCACTCTTCTCGATCATTTCTTAATTAAAAACAAAAACAAA
AGACTGATTTAGTAGCAGAGAATGAGAAATATTTATGTCATTGGTTTCCC
GCCGATGTGAGGCGCCTGACACAACCTGTCGCTCGCTGTACTAAGTCCCT
TCGGATAAACAGTCCAGTAATAAAAAGAGAGCGTCATTTAAAACAACATT
GGATGACTTTTTGCGTACACACAGTTCGTCTTTCTCTTCTCTCCGTTACT
TTAAGACGTTTCGAACTAACAACAACAACATCAAAAGTTCATATGCGCCT
ATTATGAAGGAATAGACTAAGGACCAAAATTAACCTCCAAAGCTTAGGAC
CCTTTTTTATCTTTATATAATATTTAAATAAGTTTACAGATAACAAACGA
CGAAAGGCATTCTGAATGTTAGCACAGTGTATAGTTGTTTACACAAGCAA
GTGATTAACCGCAAAAACCATCGAGTAAACAGTGGCTCGTGCAAAGTCTT
TTGTTCTCTTATGTAACGTTTTTTTTCAAAGGGCTTCATCAAAAAATGAC
CTGAGGCTTAGCAGATAGAGGAAGAGGCCCTCCNTTCAAAGGGCTTCATC
AAAAAATGACCTGAGGCTTAGCAGATAGAGGAAGAGGCCCTCCGGCCCTC
CTCAATCTAAGCTCTTTTAAGACCATAATGATTGCTTATCTATGGGACGG
CAAATAGATATGAATGAATCACTTATGATTTATTACTCTTGATCGACAAA
TTGAGATGTATCAAATTACTTGGCACAAGAAAGCATTGTTACAAAATATC
CTCAGTACCCCAATTTCAATGCTAAAGCGAAAGACAGGAAGGGTAAAAAC
GAGATTTTATTATATCCATTTTTAACGTTTTTCTAAAGCCATTTTTTCTT
TTATCAAAACATTAAAAAATTGTTCACACATCTTTAAAGATTTAGCGCAT
CATATTTATTACAATATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNTGCTTTTTAAAGTACCTCCACACCACACTATCA
ATATCATAAATCAAAACGAGCACAAAGTGTAATATTTCTAACGGTCTCTT
GATTAATGGTCATTTAATTATCCTTAAGTCATTAGAACGTTGTCAAAAAT
AATGACCTTTAAAAAGAAAAATATTGAAGATTTCTTGTTGGTAGTACTGC
ACCAATTTTGAAATTGAAGAACTTTCATTTTGTAATCGCGTAGGTTTTTC
TTCATAACATCAAATTTTAATCGGTCATCAACATCAGGGTCAATAAACAA
ATCATAAATTGCTGAATAGAAGATCGAAAGCACAATCAGAGGAGATAAGA
TAGGTTAGGTAGGAAAGAAAAGACATCTAGAAGGACGGAGAGAGATAACG
AAGAAAGGAAAAATCTAATTGAAATATATAGAGCGCCGAATACAAGAATA
ATTACCTAATTACCAATCAAAAACTATTGATGACAACAAACAAAAGCATA
CAACAAGAGGGCGGCATTATTAAAGCATACAAAAATACAGGAAATTGTAT
GTGTTTTCGAACTGACAAAGAAATAAGTAGGGGTTAAATTCTTTACTTAA
ATACACAACACCTTACTGTGGTTAATGAGCACTATTCAGTGACGGGTAGT
CAGTGATTTTGTAAAGACATACTCTTGACAGTGTATTTAATTCAAGATGG
TTGTCCTTTCAGCACCACCCAAGAGACGTCGTGAACGAACTACCTTCACT
AAAGCACAACTCGATGTATTAGAAGATCTCTTTGGCAAAACAATGTACCC
TGATGTTTTCATGAGAGAAGAAGTTGCCAAAAAAATCAGTCTGGCTGAAG
CTCGAGTACAGGTAAATTCCAATTGATTTGTTTGTAATGAATGTTTATGA
CTTGAATAATACTACAAACTACTTCAAAGTACAAACAGATTGAGTAAATG
TATTGCCATATGATTGGTCTAGCGCAACCGTTAACATAGGGTTTATTATT
GATTTTCTGATTAATATAGAAGGATATAGAATTTGGAATCGTTACCTTCA
TTATTTCTAAAATTTTCGATTTCGTTTGCTTACAGGTCTGGTTCAAAAAC
AGACGTGCCAAATTTCGTCGGTCACGAGAAAGCCCAGGACGACACTTCGA
TCACACCAAATTCTTACAACGTGATAAATTCTTACAAGACGATTTGGTTC
GTTCATTCAAATCAGGACCAAGCAGTTTCTTACCACCATATCAATATCAA
AACCCGTTATGGAAATACCCACCACCTGCAACAGAGCACAGCCCAACATA
CGGTACGTCACAGGTAGTAGACGATTCTTTTTATAGACAATCAACGAACG
GTTATAACTCAGTTTCGCCTTACACCGACTACCCTTCGTCTTACTCCACT
TCACCACGTCAACAATATTTCTCCACACAATACTACAGTCCACCCGGTGG
TAACCATGACTACAACTCATGCGCACCAAGCACCACTACATCGAACACTG
TACCTAGTATGTCCTTTTCACCTCACGAAAACACAACGAAAACAGATCTC
AATTTACCGAACACTTTTCAATGGAGCGGCAGTGGTGGCACTCCGCAATA
CGGAATGACAGCCGGTGGATCAAACATATAAACATTCAGGAGTCGTCTTT
GACAACTCAAAACTAAAAACGAGAATACAAAACTAAAATATGGGGGACCA
TTCTCTTGACACAGACGCGCAAACGGCAATCAGAATCAACCATCATATGG
GTTGGAGACTTGGATAATCCTGGGAAAAGAATGCCGCACTCAAGCGGGTT
TTTGCTCTTCGATTATTCTTCGTATTACTGGTCGAGCAGTCAGTCGGTAT
TTTACTGACAGAGGTATCTAGTTCCGATTTTAATTACTCGAAGGATGAAA
CTTTTAAAGTTTTTATAGAAAATGTAAAAAACTAACATCAGATAATTGTG
TAATTGAGAATGGAACGCCCGTCTACCGGATGGAGTTGGAATGCAACAGG
AACATTATGAAAAGAAGAAGATTTGTTTTCTTTCTTCGAAGAACAAAGAA
AGAGATTCAAACTTGATACATTTTCATAAATAAACAAAAACAACGTCTTG
AACTATTTTCCCTAGAAACAAACTAAAAATACTTGTTTTATTTTTACGTA
TTATTTGAACCATATTTTTAAATACTTTTATCCAATTTTTTTTTATTTTG
GGAATTGATGACCAATTATTAAGTTGAACCCTGAAATCACCAAGTTTTTA
GTTTTCGATTTTTACAGGTTTTTAATGAGATCTTTTATTTTCTTTCGTGT
ACATATATACTCATGACATTTATTTTTCTTCTAAGAGCATCGTTTTATTT
TACATTTATTTTTTTAAGTTGTATTTTTTTCTCGTCCTTATTTTTCTCAT
ATATACTTTCATTCGATATTTCTTTTTAAGGAAACAATTTTAATGTAGCT
AGGGAAATAATTCTAGGTGGCTGCTGTCTTGACGACTGTCAGCTTTTAAT
AGCAATTTATTTGTAATGTTGTACATAAAATGTGTATAATGCTAGTGGGT
TTATAACATGATGATAATAGTTACATATTGAAAAAAGAACTCATTCTATT
GTATACACAGACAATTTTAATTCAAAAGACCGAACAAATAAAAACAA Coding sequence (CDS) from alignment at scaffold_391:81782..86878- >TCONS_00063519 ID=TCONS_00063519|Name=TCONS_00063519|organism=Clytia hemisphaerica|type=CDS|length=3792bp|location=Sequence derived from alignment at scaffold_391:81782..86878- (Clytia hemisphaerica)
GTCTGGTTCAAAAACAGACGTGCCAAATTTCGTCGGTCACGAGAAAGCCC
AGGACGACACTTCGATCACACCAAATTCTTACAACGTGATAAATTCTTAC
AAGACGATTTGGTTCGTTCATTCAAATCAGGACCAAGCAGTTTCTTACCA
CCATATCAATATCAAAACCCGTTATGGAAATACCCACCACCTGCAACAGA
GCACAGCCCAACATACGGTACGTCACAGGTAGTAGACGATTCTTTTTATA
GACAATCAACGAACGGTTATAACTCAGTTTCGCCTTACACCGACTACCCT
TCGTCTTACTCCACTTCACCACGTCAACAATATTTCTCCACACAATACTA
CAGTCCACCCGGTGGTAACCATGACTACAACTCATGCGCACCAAGCACCA
CTACATCGAACACTGTACCTAGTATGTCCTTTTCACCTCACGAAAACACA
ACGAAAACAGATCTCAATTTACCGAACACTTTTCAATGGAGCGGCAGTGG
TGGCACTCCGCAATACGGAATGACAGCCGGTGGATCAAACATATAACACC
ACCCAAGAGACGTCGTGAACGAACTACCTTCACTAAAGCACAACTCGATG
TATTAGAAGATCTCTTTGGCAAAACAATGTACCCTGATGTTTTCATGAGA
GAAGAAGTTGCCAAAAAAATCAGTCTGGCTGAAGCTCGAGTACAGACGTT
CCGGCACGAGCGAGCACAGATCTTTCATCAACACATTCGATCATCGCACA
TCAACAAGCTACCACCATTGGTTTGTTACACGGCAACGACCACTTATTTG
AACAACATAGAGGAGGAGGCACGTGTTCGGTGTACGGAGGAATGACAATG
CCTGAACGATCGGTTGAAAGCCCTATCGACAGTCAAAACATGAAACCTGG
AATGTAAGTCAGCTGAACAGACTTTAGAAGTTTACTTTCAATACAAAAGT
CTGGTTCAAAAACAGACGTGCCAAATTTCGTCGGTCACGAGAAAGCCCAG
GACGACACTTCGATCACACCAAATTCTTACAACGTGATAAATTCTTACAA
GACGATTTGGTTCGTTCATTCAAATCAGGACCAAGCAGTTTCTTACCACC
ATATCAATATCAAAACCCGTTATGGAAATACCCACCACCTGCAACAGAGC
ACAGCCCAACATACGGTACGTCACAGGTAGTAGACGATTCTTTTTATAGA
CAATCAACGAACGGTTATAACTCAGTTTCGCCTTACACCGACTACCCTTC
GTCTTACTCCACTTCACCACGTCAACAATATTTCTCCACACAATACTACA
GTCCACCCGGTGGTAACCATGACTACAACTCATGCGCACCAAGCACCACT
ACATCGAACACTGTACCTAGTATGTCCTTTTCACCTCACGAAAACACAAC
GAAAACAGATCTCAATTTACCGAACACTTTTCAATGGAGCGGCAGTGGTG
GCACTCCGCAATACGGAATGACAGCCGGTGGATCAAACATATAACACCAC
CCAAGAGACGTCGTGAACGAACTACCTTCACTAAAGCACAACTCGATGTA
TTAGAAGATCTCTTTGGCAAAACAATGTACCCTGATGTTTTCATGAGAGA
AGAAGTTGCCAAAAAAATCAGTCTGGCTGAAGCTCGAGTACAGACGTTCC
GGCACGAGCGAGCACAGATCTTTCATCAACACATTCGATCATCGCACATC
AACAAGCTACCACCATTGGTTTGTTACACGGCAACGACCACTTATTTGAA
CAACATAGAGGAGGAGGCACGTGTTCGGTGTACGGAGGAATGACAATGCC
TGAACGATCGGTTGAAAGCCCTATCGACAGTCAAAACATGAAACCTGGAA
TGTAAGTCAGCTGAACAGACTTTAGAAGTTTACTTTCAATACAAAAGTCT
GGTTCAAAAACAGACGTGCCAAATTTCGTCGGTCACGAGAAAGCCCAGGA
CGACACTTCGATCACACCAAATTCTTACAACGTGATAAATTCTTACAAGA
CGATTTGGTTCGTTCATTCAAATCAGGACCAAGCAGTTTCTTACCACCAT
ATCAATATCAAAACCCGTTATGGAAATACCCACCACCTGCAACAGAGCAC
AGCCCAACATACGGTACGTCACAGGTAGTAGACGATTCTTTTTATAGACA
ATCAACGAACGGTTATAACTCAGTTTCGCCTTACACCGACTACCCTTCGT
CTTACTCCACTTCACCACGTCAACAATATTTCTCCACACAATACTACAGT
CCACCCGGTGGTAACCATGACTACAACTCATGCGCACCAAGCACCACTAC
ATCGAACACTGTACCTAGTATGTCCTTTTCACCTCACGAAAACACAACGA
AAACAGATCTCAATTTACCGAACACTTTTCAATGGAGCGGCAGTGGTGGC
ACTCCGCAATACGGAATGACAGCCGGTGGATCAAACATATAACACCACCC
AAGAGACGTCGTGAACGAACTACCTTCACTAAAGCACAACTCGATGTATT
AGAAGATCTCTTTGGCAAAACAATGTACCCTGATGTTTTCATGAGAGAAG
AAGTTGCCAAAAAAATCAGTCTGGCTGAAGCTCGAGTACAGACGTTCCGG
CACGAGCGAGCACAGATCTTTCATCAACACATTCGATCATCGCACATCAA
CAAGCTACCACCATTGGTTTGTTACACGGCAACGACCACTTATTTGAACA
ACATAGAGGAGGAGGCACGTGTTCGGTGTACGGAGGAATGACAATGCCTG
AACGATCGGTTGAAAGCCCTATCGACAGTCAAAACATGAAACCTGGAATG
TAAGTCAGCTGAACAGACTTTAGAAGTTTACTTTCAATACAAAAGTCTGG
TTCAAAAACAGACGTGCCAAATTTCGTCGGTCACGAGAAAGCCCAGGACG
ACACTTCGATCACACCAAATTCTTACAACGTGATAAATTCTTACAAGACG
ATTTGGTTCGTTCATTCAAATCAGGACCAAGCAGTTTCTTACCACCATAT
CAATATCAAAACCCGTTATGGAAATACCCACCACCTGCAACAGAGCACAG
CCCAACATACGGTACGTCACAGGTAGTAGACGATTCTTTTTATAGACAAT
CAACGAACGGTTATAACTCAGTTTCGCCTTACACCGACTACCCTTCGTCT
TACTCCACTTCACCACGTCAACAATATTTCTCCACACAATACTACAGTCC
ACCCGGTGGTAACCATGACTACAACTCATGCGCACCAAGCACCACTACAT
CGAACACTGTACCTAGTATGTCCTTTTCACCTCACGAAAACACAACGAAA
ACAGATCTCAATTTACCGAACACTTTTCAATGGAGCGGCAGTGGTGGCAC
TCCGCAATACGGAATGACAGCCGGTGGATCAAACATATAACACCACCCAA
GAGACGTCGTGAACGAACTACCTTCACTAAAGCACAACTCGATGTATTAG
AAGATCTCTTTGGCAAAACAATGTACCCTGATGTTTTCATGAGAGAAGAA
GTTGCCAAAAAAATCAGTCTGGCTGAAGCTCGAGTACAGACGTTCCGGCA
CGAGCGAGCACAGATCTTTCATCAACACATTCGATCATCGCACATCAACA
AGCTACCACCATTGGTTTGTTACACGGCAACGACCACTTATTTGAACAAC
ATAGAGGAGGAGGCACGTGTTCGGTGTACGGAGGAATGACAATGCCTGAA
CGATCGGTTGAAAGCCCTATCGACAGTCAAAACATGAAACCTGGAATGTA
AGTCAGCTGAACAGACTTTAGAAGTTTACTTTCAATACAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063519-exon-scaffold_391-1575043694:86832..86878 | TCONS_00063519-exon-scaffold_391-1575043694:86832..86878 | Clytia hemisphaerica | exon |
| TCONS_00063519-exon-scaffold_391-1575043694:85981..86187 | TCONS_00063519-exon-scaffold_391-1575043694:85981..86187 | Clytia hemisphaerica | exon |
| TCONS_00063519-exon-scaffold_391-1575043694:83568..83716 | TCONS_00063519-exon-scaffold_391-1575043694:83568..83716 | Clytia hemisphaerica | exon |
| TCONS_00063519-exon-scaffold_391-1575043694:81782..83343 | TCONS_00063519-exon-scaffold_391-1575043694:81782..83343 | Clytia hemisphaerica | exon |
| TCONS_00063519-exon-scaffold_391-1510915933:86832..86878 | TCONS_00063519-exon-scaffold_391-1510915933:86832..86878 | Clytia hemisphaerica | exon |
| TCONS_00063519-exon-scaffold_391-1510915933:85981..86187 | TCONS_00063519-exon-scaffold_391-1510915933:85981..86187 | Clytia hemisphaerica | exon |
| TCONS_00063519-exon-scaffold_391-1510915933:83568..83716 | TCONS_00063519-exon-scaffold_391-1510915933:83568..83716 | Clytia hemisphaerica | exon |
| TCONS_00063519-exon-scaffold_391-1510915933:81782..83343 | TCONS_00063519-exon-scaffold_391-1510915933:81782..83343 | Clytia hemisphaerica | exon |
| TCONS_00063519-exon-scaffold_391-1491911889:86832..86878 | TCONS_00063519-exon-scaffold_391-1491911889:86832..86878 | Clytia hemisphaerica | exon |
| TCONS_00063519-exon-scaffold_391-1491911889:85981..86187 | TCONS_00063519-exon-scaffold_391-1491911889:85981..86187 | Clytia hemisphaerica | exon |
| TCONS_00063519-exon-scaffold_391-1491911889:83568..83716 | TCONS_00063519-exon-scaffold_391-1491911889:83568..83716 | Clytia hemisphaerica | exon |
| TCONS_00063519-exon-scaffold_391-1491911889:81782..83343 | TCONS_00063519-exon-scaffold_391-1491911889:81782..83343 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_391 | supercontig | scaffold_391:81782..86878 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003677 | DNA binding |
| GO:0043565 | sequence-specific DNA binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006355 |
regulation of transcription, DNA-templated |
| molecular_function |
GO:0003677 |
DNA binding |
| molecular_function |
GO:0043565 |
sequence-specific DNA binding |
Blast
BLAST of TCONS_00063519 vs. Swiss-Prot (Human)
Match: OTX2 (Homeobox protein OTX2 OS=Homo sapiens GN=OTX2 PE=1 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 6.990e-26 Identity = 50/63 (79.37%), Postives = 55/63 (87.30%), Query Frame = 2
Query: 248 PGTPPKRRRERTTFTKAQLDVLEDLFGKTMYPDVFMREEVAKKISLAEARVQVWFKNRRAKFR 436
P TP K+RRERTTFT+AQLDVLE LF KT YPD+FMREEVA KI+L E+RVQVWFKNRRAK R
Sbjct: 32 PATPRKQRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCR 94
The following BLAST results are available for this feature:
|
