Otx (polypeptide) - C. hemisphaerica

Overview
NameOtx
Unique NameTCONS_00063519-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length315

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00063519-protein ID=TCONS_00063519-protein|Name=Otx|organism=Clytia hemisphaerica|type=polypeptide|length=315bp
CKSAEQTLEVYFQYKNVPARASTDLSSTHSIIAHQQATTIGLLHGNDHLF
EQHRGGGTCSVYGGMTMPERSVESPIDSQNMKPGTPPKRRRERTTFTKAQ
LDVLEDLFGKTMYPDVFMREEVAKKISLAEARVQVWFKNRRAKFRRSRES
PGRHFDHTKFLQRDKFLQDDLVRSFKSGPSSFLPPYQYQNPLWKYPPPAT
EHSPTYGTSQVVDDSFYRQSTNGYNSVSPYTDYPSSYSTSPRQQYFSTQY
YSPPGGNHDYNSCAPSTTTSNTVPSMSFSPHENTTKTDLNLPNTFQWSGS
GGTPQYGMTAGGSNI
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_039817XLOC_039817Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00063519TCONS_00063519Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001356Homeobox_dom
IPR017970Homeobox_CS
IPR009057Homeobox-like
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0043565sequence-specific DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
molecular_function GO:0003677 DNA binding
molecular_function GO:0043565 sequence-specific DNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001356Homeobox domainSMARTSM00389HOX_1coord: 89..151
e-value: 2.1E-23
score: 93.7
IPR001356Homeobox domainPFAMPF00046Homeoboxcoord: 90..146
e-value: 3.5E-21
score: 74.7
IPR001356Homeobox domainPROSITEPS50071HOMEOBOX_2coord: 87..147
score: 19.645
NoneNo IPR availableGENE3D1.10.10.60coord: 83..154
e-value: 1.2E-26
score: 91.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 68..93
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 266..289
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 296..315
NoneNo IPR availableCDDcd00086homeodomaincoord: 90..148
e-value: 1.51346E-21
score: 84.9876
IPR017970Homeobox, conserved sitePROSITEPS00027HOMEOBOX_1coord: 122..145
IPR009057Homeobox domain-likeSUPERFAMILY46689Homeodomain-likecoord: 82..148

Blast
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BLAST of Otx vs. Swiss-Prot (Human)
Match: OTX2 (Homeobox protein OTX2 OS=Homo sapiens GN=OTX2 PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 3.854e-28
Identity = 50/63 (79.37%), Postives = 55/63 (87.30%), Query Frame = 0 
Query:   83 PGTPPKRRRERTTFTKAQLDVLEDLFGKTMYPDVFMREEVAKKISLAEARVQVWFKNRRAKFR 145
            P TP K+RRERTTFT+AQLDVLE LF KT YPD+FMREEVA KI+L E+RVQVWFKNRRAK R
Sbjct:   32 PATPRKQRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCR 94
The following BLAST results are available for this feature:
BLAST of Otx vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
OTX23.854e-2879.37Homeobox protein OTX2 OS=Homo sapiens GN=OTX2 PE=1... [more]
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