XLOC_042132 (gene) - C. hemisphaerica

Overview
NameXLOC_042132
Unique NameXLOC_042132
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_47:469230..473495+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_042132 ID=XLOC_042132|Name=XLOC_042132|organism=Clytia hemisphaerica|type=gene|length=4266bp|location=Sequence derived from alignment at scaffold_47:469230..473495+ (Clytia hemisphaerica)
TTTATTACATATTTGTATGTGTAATAAATCTTTTGGTTGTTTTCTCCAGA
tgccatttttaaaacattatcCAGATATTTACTACTATTGATCTTGTTTT
GTTTCAGACGAATGTCAATTCTTTCACAATGGATGTAGGTGAGTAATGAA
TAGAGATTGTTTACCTAGATCAATCACATCTTTGCCATTCGCCAGCGAAT
TCTTGATTCGTCTTCCCTCTAAGAAGAGTAGGAGGAAAAACTTTCTATCA
TAACATAAACAAATCATATGCTgtttatttcgaaagatttTGTAAATCTT
ACTTGTGTTCGCTTCCTACGCTCTTGAGAAACTTACTTTTTAAAACAATC
gaaaatgagttttttaaagaaaagattttgcaaaaaaaaagcgACTAGCG
TAAATTAAACAAAGCTGCAAGGCAATCATTAGATCATACCCTTTCTTGAA
ATGACAAAAGTTCTCTTCCTTGATAGCAttcttatcaaataaaaatctGT
TTGGCAAACCGCTTTCGATTTTCTCACATCAGCAATTACGAAAAACACTT
TGATAAAACCAAGTTAACATGTTTTCAAATAATTGATACACAACAATATC
TTGTAATACAGACGTAGCATTTGAGAGTGCAATTAATCTATTTTCAAATG
ACAACTTAACTAGTAATctcttaaatcttttttaaccATTATATGTGAAG
TGTAATTGCTTCACTGCTCATAATAAGATTTATTTTATCATCACATCAAA
GCTTTATGTTTCTTGTTAGCCCAACAACGTAATTGATGGTCTTAAGGATA
ATGCTACAACTCGAACAATATCTCTCCCTGATATATGCGTTGTAAaataa
ataaggtttttttaacTTCGTGGTGAAAATTGGATTAAGTTCTCCACTTC
AAGGTGAATGAAGAGGGGTTAAATTGAAAGAGGTCTTTTTGGATTTCTAT
TTTGTTCATCTTATTCATATTATGTTTTGATGTCTCTTCTTTTATTTGAT
TATGGgttttctacttttctttaaGACATGGATGAAGGGGGTACAGGTGC
CAGCAGCAGCAATGGAGAAAGAGGGCAAaactccaaacaaaaagaaTATG
ATGAAGACGGTTGGGAAATTGTCAGAAGGTCCAAAAAACGTTGATATTTC
CAAACCATTTTGCGTCGCGGTGGTTTGAAAAAGATTGTTCTTACCCGTGG
TGAAAGGTAGACTTTGGTTCGTCCTGGGTTTGTGTTTGGTAGACCACTTC
ATCTGGTACCCGAATACGTTGCGTTGGTAGTTGTCATCAAACGACTTGGA
CAGAAACTTCTTCATTACTCGTACAAGTTATGTTTACAAGATACTCACTC
GAGTGCAATGGAACGTTATCAATCTTATAAACTAGAAGAAGCGAGAGATG
ATTTCCCCAAAGAAGTGACGTCGAAATTTTCTTTACAAACATATAATAAA
CATTACGAGCATGAATCTGGTAATGTCACCCAAATAggtgaaaatttttg
gaaaaaataaagttttgaatttcacttttattcctggataatctttttat
taatgacttcaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCAatcatatataattttt
tgttaaaatcttatcttaaaagttaagatttGAGCTTGACATCAACTGTT
GTACATCTTCATAAtcattaaatatgatttttccttgCCAGTCACTCAac
tttttcaatagaaaggATTAAATGTATAACAATGctgtgttgcggacata
actttttttcttccagGGTAGAACCATAGGACATTATACatcatttattt
aaaattttggagtgtctttttctattgccaaaatttaaggaatattatag
agactaaatcaatatgaaaccaaaagatttggtttggtttgatttcagtt
attacatgtttttcttcgaaaagaacaaaagaagacttATTAAAGATGTT
AGAGCTTTCTCATATTTCTAATAGAAGAACAACCCtagaggacacaaaaa
attgaaaaaaagcaaggaaatgcatggtttttacaaatgtaactctttag
tattgtcaaagtgttagcataactgcttacgggggttaaaaatctgataa
atactttaaatagttatgtccgcaacatacaaTTTGCTAAAGAATATGAC
TCTGTTTTGAACTATTGGAGCAATTCTAACCAGTCNATCATAACATAAAC
AAATCATATGCTgtttatttcgaaagatttTGTAAATCTTACTTGTGTTC
GCTTCCTACGCTCTTGAGAAACTTACTTTTTAAAACAATCgaaaatgagt
tttttaaagaaaagattttgcaaaaaaaaagcgACTAGCGTAAATTAAAC
AAAGCTGCAAGGCAATCATTAGATCATACCCTTTCTTGAAATGACAAAAG
TTCTCTTCCTTGGTAGCAttcttatcaaataaaaatctGTTTGGCAAACC
GCTTTCGATTTTCTCACATCAGCAATTACTTTGATAAAACCAAGTTAACA
TGTTTTCAAATAATTGATACACAACAATATCTTGTAATACAGACGTAGCA
TTTGAGAGTGCAATTAATCTATTTTCAAATGACAACTTAACTAGTAATct
cttaaatcttttttaaccATTATATGTGAAGTGTAATTGCTTCACTGCTC
ATAATAAGATTTATTTTATCATCACATCAAAGCTTTATGTTTCTTGTTAG
CCCAACAACGTAATTGATGGTCTTAAGGATAATGCTACAACTCGAACAAT
ATCTCTCCCTGATATATGCGTTGTAtaataaataaggtttttttaacTTC
GTGTAGTGAAAATTGGATTAAGTTCTCCACTTCAAGGTTAAAATGAAGAG
GTGTTAAATTGAAAGAGGTCTTTTTGGATTTCTATTTTGTTCATCTTATT
CATATTGTGTTTTGATGTCTCTTCTTTTATTTGATTATGGgttttctact
tttctttaaGACATGGATGAAGGGGGTACAGGTGCCAGCAGCAGCAGCAA
TGGAGATAGAGGGCAAaactccaaacaaaaagaaTATGATGAAGACGGTT
GGGAAATTGTCAGAAGGTCCAAAAAACGTTGATATTTCCAAACCATTTTG
CGTCGCGGTTGTTTGAAAAAGATTGTTCTTACCCGTGGTGAAAGGTAGAC
TTTGGTTCGTCCTGGGTTTGTGTTTGGTAGACCACTTCATCTGGTACCCG
AATACGTTGCGTTGGTAGTTGTCATCAAACGACTTGGACAGAAACTTCTT
CATTACTCGTACAAGTTATGTTTACAAGTACTCACTCGAGTGCAATGGAA
CGTTATCAATCTTATAAACTAGAAGAAGCGAGAGATGATTTCcccaaaga
aaataaaaagtgacGTCGAAATTTTCTTTACAAACATATAATAAACATTA
CAAACACTCTTTTCGATTATTGCAACAATGATACCTCCCCTCTCAAAAGT
gacgttgttttgattttcaatgtGGTATGCATACATGCAGAAACTCGATG
TCAGAAAAACTCCTTACAATCTTAGATAAtgcaaaaaatgctttttaata
GAGATCGTTGTTAGTAATTAATTCCATGTGATTTCTATCTTTTATTTGTG
GCACAGACCTTGTTGTGACTGTGCGCGATGGAGATGAAACTTGGAACGTA
TATTCGCATAAACAGGTCGATGGGAAGATGATTTGAATTTTAAGTATTAT
AATGTTGTTATATTTCACTTTATAACTTGGATAGATGTTAGATATATTTT
TTGATTCACACCGTTTTTAAGGTTTAAGTATACGGTATTAATAGGAAATC
AGGTGATTTGATAACTTTTGTATTTCTTTACAAGTTTCGatatactctag
gggctgagttaggtctcgtatgcgcatcggcgtatagtcattttttcttt
tgatcatgaaagtatagtccttgaagagtcagaNGTAAGTCatgattttt
tatcatttcctCTTTTTTTAATAGGAAATCAGGTGATTTGATAACTTTCG
TATTTCTTTACAAGTTTCGATACCTCTTGTTtcaaataatatataatttg
tTAGATTAAATCGAAT
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00067454TCONS_00067454Clytia hemisphaericatranscript
TCONS_00067455TCONS_00067455Clytia hemisphaericatranscript
TCONS_00067456TCONS_00067456Clytia hemisphaericatranscript
TCONS_00067457TCONS_00067457Clytia hemisphaericatranscript
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_47supercontigscaffold_47:469230..473495 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
20.67	16.58	6.82	4.17	48.15	35.89	32.75	34.86	22.36	24.12	18.66	16.45	11.9	15.2	10.86	10.51	16.43	11.76	6.72	9.32	20.43	21.01	24.48	25.58	21.68	21.42	12.9	8.3	11.03	16.07