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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067456 ID=TCONS_00067456|Name=TCONS_00067456|organism=Clytia hemisphaerica|type=transcript|length=1149bp
GTTTTGTTTCAGACGAATGTCAATTCTTTCACAATGGATGTAGACATGGA
TGAAGGGGGTACAGGTGCCAGCAGCAGCAGCAATGGAGATAGAGGGCAAa
actccaaacaaaaagaaTATGATGAAGACGGTTGGGAAATTGTCAGAAGG
TCCAAAAAACGTTGATATTTCCAAACCATTTTGCGTCGCGGTTGTTTGAA
AAAGATTGTTCTTACCCGTGGTGAAAGGTAGACTTTGGTTCGTCCTGGGT
TTGTGTTTGGTAGACCACTTCATCTGGTACCCGAATACGTTGCGTTGGTA
GTTGTCATCAAACGACTTGGACAGAAACTTCTTCATTACTCGTACAAGTT
ATGTTTACAAGTACTCACTCGAGTGCAATGGAACGTTATCAATCTTATAA
ACTAGAAGAAGCGAGAGATGATTTCcccaaagaaaataaaaagtgacGTC
GAAATTTTCTTTACAAACATATAATAAACATTACAAACACTCTTTTCGAT
TATTGCAACAATGATACCTCCCCTCTCAAAAGTgacgttgttttgatttt
caatgtGGTATGCATACATGCAGAAACTCGATGTCAGAAAAACTCCTTAC
AATCTTAGATAAtgcaaaaaatgctttttaataGAGATCGTTGTTAGTAA
TTAATTCCATGTGATTTCTATCTTTTATTTGTGGCACAGACCTTGTTGTG
ACTGTGCGCGATGGAGATGAAACTTGGAACGTATATTCGCATAAACAGGT
CGATGGGAAGATGATTTGAATTTTAAGTATTATAATGTTGTTATATTTCA
CTTTATAACTTGGATAGATGTTAGATATATTTTTTGATTCACACCGTTTT
TAAGGTTTAAGTATACGGTATTAATAGGAAATCAGGTGATTTGATAACTT
TTGTATTTCTTTACAAGTTTCGatatactctaggggctgagttaggtctc
gtatgcgcatcggcgtatagtcattttttcttttgatcatgaaagtatag
tccttgaagagtcagaNGTAAGTCatgattttttatcatttcctCTTTTT
TTAATAGGAAATCAGGTGATTTGATAACTTTCGTATTTCTTTACAAGTTT
CGATACCTCTTGTTtcaaataatatataatttgtTAGATTAAATCGAAT Run BLAST on NCBI transcript from alignment at scaffold_47:469325..473495+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067456 ID=TCONS_00067456|Name=TCONS_00067456|organism=Clytia hemisphaerica|type=transcript|length=4171bp|location=Sequence derived from alignment at scaffold_47:469325..473495+ (Clytia hemisphaerica)
GTTTTGTTTCAGACGAATGTCAATTCTTTCACAATGGATGTAGGTGAGTA
ATGAATAGAGATTGTTTACCTAGATCAATCACATCTTTGCCATTCGCCAG
CGAATTCTTGATTCGTCTTCCCTCTAAGAAGAGTAGGAGGAAAAACTTTC
TATCATAACATAAACAAATCATATGCTgtttatttcgaaagatttTGTAA
ATCTTACTTGTGTTCGCTTCCTACGCTCTTGAGAAACTTACTTTTTAAAA
CAATCgaaaatgagttttttaaagaaaagattttgcaaaaaaaaagcgAC
TAGCGTAAATTAAACAAAGCTGCAAGGCAATCATTAGATCATACCCTTTC
TTGAAATGACAAAAGTTCTCTTCCTTGATAGCAttcttatcaaataaaaa
tctGTTTGGCAAACCGCTTTCGATTTTCTCACATCAGCAATTACGAAAAA
CACTTTGATAAAACCAAGTTAACATGTTTTCAAATAATTGATACACAACA
ATATCTTGTAATACAGACGTAGCATTTGAGAGTGCAATTAATCTATTTTC
AAATGACAACTTAACTAGTAATctcttaaatcttttttaaccATTATATG
TGAAGTGTAATTGCTTCACTGCTCATAATAAGATTTATTTTATCATCACA
TCAAAGCTTTATGTTTCTTGTTAGCCCAACAACGTAATTGATGGTCTTAA
GGATAATGCTACAACTCGAACAATATCTCTCCCTGATATATGCGTTGTAA
aataaataaggtttttttaacTTCGTGGTGAAAATTGGATTAAGTTCTCC
ACTTCAAGGTGAATGAAGAGGGGTTAAATTGAAAGAGGTCTTTTTGGATT
TCTATTTTGTTCATCTTATTCATATTATGTTTTGATGTCTCTTCTTTTAT
TTGATTATGGgttttctacttttctttaaGACATGGATGAAGGGGGTACA
GGTGCCAGCAGCAGCAATGGAGAAAGAGGGCAAaactccaaacaaaaaga
aTATGATGAAGACGGTTGGGAAATTGTCAGAAGGTCCAAAAAACGTTGAT
ATTTCCAAACCATTTTGCGTCGCGGTGGTTTGAAAAAGATTGTTCTTACC
CGTGGTGAAAGGTAGACTTTGGTTCGTCCTGGGTTTGTGTTTGGTAGACC
ACTTCATCTGGTACCCGAATACGTTGCGTTGGTAGTTGTCATCAAACGAC
TTGGACAGAAACTTCTTCATTACTCGTACAAGTTATGTTTACAAGATACT
CACTCGAGTGCAATGGAACGTTATCAATCTTATAAACTAGAAGAAGCGAG
AGATGATTTCCCCAAAGAAGTGACGTCGAAATTTTCTTTACAAACATATA
ATAAACATTACGAGCATGAATCTGGTAATGTCACCCAAATAggtgaaaat
ttttggaaaaaataaagttttgaatttcacttttattcctggataatctt
tttattaatgacttcaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCAatcatatataa
ttttttgttaaaatcttatcttaaaagttaagatttGAGCTTGACATCAA
CTGTTGTACATCTTCATAAtcattaaatatgatttttccttgCCAGTCAC
TCAactttttcaatagaaaggATTAAATGTATAACAATGctgtgttgcgg
acataactttttttcttccagGGTAGAACCATAGGACATTATACatcatt
tatttaaaattttggagtgtctttttctattgccaaaatttaaggaatat
tatagagactaaatcaatatgaaaccaaaagatttggtttggtttgattt
cagttattacatgtttttcttcgaaaagaacaaaagaagacttATTAAAG
ATGTTAGAGCTTTCTCATATTTCTAATAGAAGAACAACCCtagaggacac
aaaaaattgaaaaaaagcaaggaaatgcatggtttttacaaatgtaactc
tttagtattgtcaaagtgttagcataactgcttacgggggttaaaaatct
gataaatactttaaatagttatgtccgcaacatacaaTTTGCTAAAGAAT
ATGACTCTGTTTTGAACTATTGGAGCAATTCTAACCAGTCNATCATAACA
TAAACAAATCATATGCTgtttatttcgaaagatttTGTAAATCTTACTTG
TGTTCGCTTCCTACGCTCTTGAGAAACTTACTTTTTAAAACAATCgaaaa
tgagttttttaaagaaaagattttgcaaaaaaaaagcgACTAGCGTAAAT
TAAACAAAGCTGCAAGGCAATCATTAGATCATACCCTTTCTTGAAATGAC
AAAAGTTCTCTTCCTTGGTAGCAttcttatcaaataaaaatctGTTTGGC
AAACCGCTTTCGATTTTCTCACATCAGCAATTACTTTGATAAAACCAAGT
TAACATGTTTTCAAATAATTGATACACAACAATATCTTGTAATACAGACG
TAGCATTTGAGAGTGCAATTAATCTATTTTCAAATGACAACTTAACTAGT
AATctcttaaatcttttttaaccATTATATGTGAAGTGTAATTGCTTCAC
TGCTCATAATAAGATTTATTTTATCATCACATCAAAGCTTTATGTTTCTT
GTTAGCCCAACAACGTAATTGATGGTCTTAAGGATAATGCTACAACTCGA
ACAATATCTCTCCCTGATATATGCGTTGTAtaataaataaggttttttta
acTTCGTGTAGTGAAAATTGGATTAAGTTCTCCACTTCAAGGTTAAAATG
AAGAGGTGTTAAATTGAAAGAGGTCTTTTTGGATTTCTATTTTGTTCATC
TTATTCATATTGTGTTTTGATGTCTCTTCTTTTATTTGATTATGGgtttt
ctacttttctttaaGACATGGATGAAGGGGGTACAGGTGCCAGCAGCAGC
AGCAATGGAGATAGAGGGCAAaactccaaacaaaaagaaTATGATGAAGA
CGGTTGGGAAATTGTCAGAAGGTCCAAAAAACGTTGATATTTCCAAACCA
TTTTGCGTCGCGGTTGTTTGAAAAAGATTGTTCTTACCCGTGGTGAAAGG
TAGACTTTGGTTCGTCCTGGGTTTGTGTTTGGTAGACCACTTCATCTGGT
ACCCGAATACGTTGCGTTGGTAGTTGTCATCAAACGACTTGGACAGAAAC
TTCTTCATTACTCGTACAAGTTATGTTTACAAGTACTCACTCGAGTGCAA
TGGAACGTTATCAATCTTATAAACTAGAAGAAGCGAGAGATGATTTCccc
aaagaaaataaaaagtgacGTCGAAATTTTCTTTACAAACATATAATAAA
CATTACAAACACTCTTTTCGATTATTGCAACAATGATACCTCCCCTCTCA
AAAGTgacgttgttttgattttcaatgtGGTATGCATACATGCAGAAACT
CGATGTCAGAAAAACTCCTTACAATCTTAGATAAtgcaaaaaatgctttt
taataGAGATCGTTGTTAGTAATTAATTCCATGTGATTTCTATCTTTTAT
TTGTGGCACAGACCTTGTTGTGACTGTGCGCGATGGAGATGAAACTTGGA
ACGTATATTCGCATAAACAGGTCGATGGGAAGATGATTTGAATTTTAAGT
ATTATAATGTTGTTATATTTCACTTTATAACTTGGATAGATGTTAGATAT
ATTTTTTGATTCACACCGTTTTTAAGGTTTAAGTATACGGTATTAATAGG
AAATCAGGTGATTTGATAACTTTTGTATTTCTTTACAAGTTTCGatatac
tctaggggctgagttaggtctcgtatgcgcatcggcgtatagtcattttt
tcttttgatcatgaaagtatagtccttgaagagtcagaNGTAAGTCatga
ttttttatcatttcctCTTTTTTTAATAGGAAATCAGGTGATTTGATAAC
TTTCGTATTTCTTTACAAGTTTCGATACCTCTTGTTtcaaataatatata
atttgtTAGATTAAATCGAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067456-exon-scaffold_47-1491911889:469325..469367 | TCONS_00067456-exon-scaffold_47-1491911889:469325..469367 | Clytia hemisphaerica | exon |
| TCONS_00067456-exon-scaffold_47-1510915933:469325..469367 | TCONS_00067456-exon-scaffold_47-1510915933:469325..469367 | Clytia hemisphaerica | exon |
| TCONS_00067456-exon-scaffold_47-1575043694:469325..469367 | TCONS_00067456-exon-scaffold_47-1575043694:469325..469367 | Clytia hemisphaerica | exon |
| TCONS_00067456-exon-scaffold_47-1491911889:470255..470275 | TCONS_00067456-exon-scaffold_47-1491911889:470255..470275 | Clytia hemisphaerica | exon |
| TCONS_00067456-exon-scaffold_47-1510915933:470255..470275 | TCONS_00067456-exon-scaffold_47-1510915933:470255..470275 | Clytia hemisphaerica | exon |
| TCONS_00067456-exon-scaffold_47-1575043694:470255..470275 | TCONS_00067456-exon-scaffold_47-1575043694:470255..470275 | Clytia hemisphaerica | exon |
| TCONS_00067456-exon-scaffold_47-1491911889:472411..473495 | TCONS_00067456-exon-scaffold_47-1491911889:472411..473495 | Clytia hemisphaerica | exon |
| TCONS_00067456-exon-scaffold_47-1510915933:472411..473495 | TCONS_00067456-exon-scaffold_47-1510915933:472411..473495 | Clytia hemisphaerica | exon |
| TCONS_00067456-exon-scaffold_47-1575043694:472411..473495 | TCONS_00067456-exon-scaffold_47-1575043694:472411..473495 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_47 | supercontig | scaffold_47:469325..473495 + |
Blast
The following BLAST results are available for this feature:
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