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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067455 ID=TCONS_00067455|Name=TCONS_00067455|organism=Clytia hemisphaerica|type=transcript|length=1096bp
TTTATTACATATTTGTATGTGTAATAAATCTTTTGGTTGTTTTCTCCAGA
tgccatttttaaaacattatcCAGATATTTACTACTATTGATCTTGTTTT
GTTTCAGACGAATGTCAATTCTTTCACAATGGATGTAGACATGGATGAAG
GGGGTACAGGTGCCAGCAGCAGCAGCAATGGAGATAGAGGGCAAaactcc
aaacaaaaagaaTATGATGAAGACGGTTGGGAAATTGTCAGAAGGTCCAA
AAAACGTTGATATTTCCAAACCATTTTGCGTCGCGGTTGTTTGAAAAAGA
TTGTTCTTACCCGTGGTGAAAGGTAGACTTTGGTTCGTCCTGGGTTTGTG
TTTGGTAGACCACTTCATCTGGTACCCGAATACGTTGCGTTGGTAGTTGT
CATCAAACGACTTGGACAGAAACTTCTTCATTACTCGTACAAGTTATGTT
TACAAGTACTCACTCGAGTGCAATGGAACGTTATCAATCTTATAAACTAG
AAGAAGCGAGAGATGATTTCcccaaagaaaataaaaagtgacGTCGAAAT
TTTCTTTACAAACATATAATAAACATTACAAACACTCTTTTCGATTATTG
CAACAATGATACCTCCCCTCTCAAAAGTgacgttgttttgattttcaatg
tGGTATGCATACATGCAGAAACTCGATGTCAGAAAAACTCCTTACAATCT
TAGATAAtgcaaaaaatgctttttaataGAGATCGTTGTTAGTAATTAAT
TCCATGTGATTTCTATCTTTTATTTGTGGCACAGACCTTGTTGTGACTGT
GCGCGATGGAGATGAAACTTGGAACGTATATTCGCATAAACAGGTCGATG
GGAAGATGATTTGAATTTTAAGTATTATAATGTTGTTATATTTCACTTTA
TAACTTGGATAGATGTTAGATATATTTTTTGATTCACACCGTTTTTAAGG
TTTAAGTATACGaNGTAAGTCatgattttttatcatttcctCTTTTTTTA
ATAGGAAATCAGGTGATTTGATAACTTTCGTATTTCTTTACAAGTTTCGA
TACCTCTTGTTtcaaataatatataatttgtTAGATTAAATCGAAT Run BLAST on NCBI transcript from alignment at scaffold_47:469230..473495+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067455 ID=TCONS_00067455|Name=TCONS_00067455|organism=Clytia hemisphaerica|type=transcript|length=4266bp|location=Sequence derived from alignment at scaffold_47:469230..473495+ (Clytia hemisphaerica)
TTTATTACATATTTGTATGTGTAATAAATCTTTTGGTTGTTTTCTCCAGA
tgccatttttaaaacattatcCAGATATTTACTACTATTGATCTTGTTTT
GTTTCAGACGAATGTCAATTCTTTCACAATGGATGTAGGTGAGTAATGAA
TAGAGATTGTTTACCTAGATCAATCACATCTTTGCCATTCGCCAGCGAAT
TCTTGATTCGTCTTCCCTCTAAGAAGAGTAGGAGGAAAAACTTTCTATCA
TAACATAAACAAATCATATGCTgtttatttcgaaagatttTGTAAATCTT
ACTTGTGTTCGCTTCCTACGCTCTTGAGAAACTTACTTTTTAAAACAATC
gaaaatgagttttttaaagaaaagattttgcaaaaaaaaagcgACTAGCG
TAAATTAAACAAAGCTGCAAGGCAATCATTAGATCATACCCTTTCTTGAA
ATGACAAAAGTTCTCTTCCTTGATAGCAttcttatcaaataaaaatctGT
TTGGCAAACCGCTTTCGATTTTCTCACATCAGCAATTACGAAAAACACTT
TGATAAAACCAAGTTAACATGTTTTCAAATAATTGATACACAACAATATC
TTGTAATACAGACGTAGCATTTGAGAGTGCAATTAATCTATTTTCAAATG
ACAACTTAACTAGTAATctcttaaatcttttttaaccATTATATGTGAAG
TGTAATTGCTTCACTGCTCATAATAAGATTTATTTTATCATCACATCAAA
GCTTTATGTTTCTTGTTAGCCCAACAACGTAATTGATGGTCTTAAGGATA
ATGCTACAACTCGAACAATATCTCTCCCTGATATATGCGTTGTAAaataa
ataaggtttttttaacTTCGTGGTGAAAATTGGATTAAGTTCTCCACTTC
AAGGTGAATGAAGAGGGGTTAAATTGAAAGAGGTCTTTTTGGATTTCTAT
TTTGTTCATCTTATTCATATTATGTTTTGATGTCTCTTCTTTTATTTGAT
TATGGgttttctacttttctttaaGACATGGATGAAGGGGGTACAGGTGC
CAGCAGCAGCAATGGAGAAAGAGGGCAAaactccaaacaaaaagaaTATG
ATGAAGACGGTTGGGAAATTGTCAGAAGGTCCAAAAAACGTTGATATTTC
CAAACCATTTTGCGTCGCGGTGGTTTGAAAAAGATTGTTCTTACCCGTGG
TGAAAGGTAGACTTTGGTTCGTCCTGGGTTTGTGTTTGGTAGACCACTTC
ATCTGGTACCCGAATACGTTGCGTTGGTAGTTGTCATCAAACGACTTGGA
CAGAAACTTCTTCATTACTCGTACAAGTTATGTTTACAAGATACTCACTC
GAGTGCAATGGAACGTTATCAATCTTATAAACTAGAAGAAGCGAGAGATG
ATTTCCCCAAAGAAGTGACGTCGAAATTTTCTTTACAAACATATAATAAA
CATTACGAGCATGAATCTGGTAATGTCACCCAAATAggtgaaaatttttg
gaaaaaataaagttttgaatttcacttttattcctggataatctttttat
taatgacttcaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCAatcatatataattttt
tgttaaaatcttatcttaaaagttaagatttGAGCTTGACATCAACTGTT
GTACATCTTCATAAtcattaaatatgatttttccttgCCAGTCACTCAac
tttttcaatagaaaggATTAAATGTATAACAATGctgtgttgcggacata
actttttttcttccagGGTAGAACCATAGGACATTATACatcatttattt
aaaattttggagtgtctttttctattgccaaaatttaaggaatattatag
agactaaatcaatatgaaaccaaaagatttggtttggtttgatttcagtt
attacatgtttttcttcgaaaagaacaaaagaagacttATTAAAGATGTT
AGAGCTTTCTCATATTTCTAATAGAAGAACAACCCtagaggacacaaaaa
attgaaaaaaagcaaggaaatgcatggtttttacaaatgtaactctttag
tattgtcaaagtgttagcataactgcttacgggggttaaaaatctgataa
atactttaaatagttatgtccgcaacatacaaTTTGCTAAAGAATATGAC
TCTGTTTTGAACTATTGGAGCAATTCTAACCAGTCNATCATAACATAAAC
AAATCATATGCTgtttatttcgaaagatttTGTAAATCTTACTTGTGTTC
GCTTCCTACGCTCTTGAGAAACTTACTTTTTAAAACAATCgaaaatgagt
tttttaaagaaaagattttgcaaaaaaaaagcgACTAGCGTAAATTAAAC
AAAGCTGCAAGGCAATCATTAGATCATACCCTTTCTTGAAATGACAAAAG
TTCTCTTCCTTGGTAGCAttcttatcaaataaaaatctGTTTGGCAAACC
GCTTTCGATTTTCTCACATCAGCAATTACTTTGATAAAACCAAGTTAACA
TGTTTTCAAATAATTGATACACAACAATATCTTGTAATACAGACGTAGCA
TTTGAGAGTGCAATTAATCTATTTTCAAATGACAACTTAACTAGTAATct
cttaaatcttttttaaccATTATATGTGAAGTGTAATTGCTTCACTGCTC
ATAATAAGATTTATTTTATCATCACATCAAAGCTTTATGTTTCTTGTTAG
CCCAACAACGTAATTGATGGTCTTAAGGATAATGCTACAACTCGAACAAT
ATCTCTCCCTGATATATGCGTTGTAtaataaataaggtttttttaacTTC
GTGTAGTGAAAATTGGATTAAGTTCTCCACTTCAAGGTTAAAATGAAGAG
GTGTTAAATTGAAAGAGGTCTTTTTGGATTTCTATTTTGTTCATCTTATT
CATATTGTGTTTTGATGTCTCTTCTTTTATTTGATTATGGgttttctact
tttctttaaGACATGGATGAAGGGGGTACAGGTGCCAGCAGCAGCAGCAA
TGGAGATAGAGGGCAAaactccaaacaaaaagaaTATGATGAAGACGGTT
GGGAAATTGTCAGAAGGTCCAAAAAACGTTGATATTTCCAAACCATTTTG
CGTCGCGGTTGTTTGAAAAAGATTGTTCTTACCCGTGGTGAAAGGTAGAC
TTTGGTTCGTCCTGGGTTTGTGTTTGGTAGACCACTTCATCTGGTACCCG
AATACGTTGCGTTGGTAGTTGTCATCAAACGACTTGGACAGAAACTTCTT
CATTACTCGTACAAGTTATGTTTACAAGTACTCACTCGAGTGCAATGGAA
CGTTATCAATCTTATAAACTAGAAGAAGCGAGAGATGATTTCcccaaaga
aaataaaaagtgacGTCGAAATTTTCTTTACAAACATATAATAAACATTA
CAAACACTCTTTTCGATTATTGCAACAATGATACCTCCCCTCTCAAAAGT
gacgttgttttgattttcaatgtGGTATGCATACATGCAGAAACTCGATG
TCAGAAAAACTCCTTACAATCTTAGATAAtgcaaaaaatgctttttaata
GAGATCGTTGTTAGTAATTAATTCCATGTGATTTCTATCTTTTATTTGTG
GCACAGACCTTGTTGTGACTGTGCGCGATGGAGATGAAACTTGGAACGTA
TATTCGCATAAACAGGTCGATGGGAAGATGATTTGAATTTTAAGTATTAT
AATGTTGTTATATTTCACTTTATAACTTGGATAGATGTTAGATATATTTT
TTGATTCACACCGTTTTTAAGGTTTAAGTATACGGTATTAATAGGAAATC
AGGTGATTTGATAACTTTTGTATTTCTTTACAAGTTTCGatatactctag
gggctgagttaggtctcgtatgcgcatcggcgtatagtcattttttcttt
tgatcatgaaagtatagtccttgaagagtcagaNGTAAGTCatgattttt
tatcatttcctCTTTTTTTAATAGGAAATCAGGTGATTTGATAACTTTCG
TATTTCTTTACAAGTTTCGATACCTCTTGTTtcaaataatatataatttg
tTAGATTAAATCGAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067455-exon-scaffold_47-1491911889:469230..469367 | TCONS_00067455-exon-scaffold_47-1491911889:469230..469367 | Clytia hemisphaerica | exon |
| TCONS_00067455-exon-scaffold_47-1510915933:469230..469367 | TCONS_00067455-exon-scaffold_47-1510915933:469230..469367 | Clytia hemisphaerica | exon |
| TCONS_00067455-exon-scaffold_47-1575043694:469230..469367 | TCONS_00067455-exon-scaffold_47-1575043694:469230..469367 | Clytia hemisphaerica | exon |
| TCONS_00067455-exon-scaffold_47-1491911889:472390..473213 | TCONS_00067455-exon-scaffold_47-1491911889:472390..473213 | Clytia hemisphaerica | exon |
| TCONS_00067455-exon-scaffold_47-1510915933:472390..473213 | TCONS_00067455-exon-scaffold_47-1510915933:472390..473213 | Clytia hemisphaerica | exon |
| TCONS_00067455-exon-scaffold_47-1575043694:472390..473213 | TCONS_00067455-exon-scaffold_47-1575043694:472390..473213 | Clytia hemisphaerica | exon |
| TCONS_00067455-exon-scaffold_47-1491911889:473362..473495 | TCONS_00067455-exon-scaffold_47-1491911889:473362..473495 | Clytia hemisphaerica | exon |
| TCONS_00067455-exon-scaffold_47-1510915933:473362..473495 | TCONS_00067455-exon-scaffold_47-1510915933:473362..473495 | Clytia hemisphaerica | exon |
| TCONS_00067455-exon-scaffold_47-1575043694:473362..473495 | TCONS_00067455-exon-scaffold_47-1575043694:473362..473495 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_47 | supercontig | scaffold_47:469230..473495 + |
Blast
The following BLAST results are available for this feature:
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