XLOC_040858 (gene) - C. hemisphaerica

Overview
NameXLOC_040858
Unique NameXLOC_040858
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_433:80456..83851+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_040858 ID=XLOC_040858|Name=XLOC_040858|organism=Clytia hemisphaerica|type=gene|length=3396bp|location=Sequence derived from alignment at scaffold_433:80456..83851+ (Clytia hemisphaerica)
ttttgttttatttttgtttttgttttaatttttttttcaaaaaattttga
aatgaaattaatttgattttttggcaATTGCTCAAAACTACTATACTCCG
AAACCACCTATGGATTTTCCCTATTGACAAGGGAAATTCCCATCGTAGCA
TAACAAACAAATAATTTCACGTGTGCGCGCACATCGTCTCTCTTTTCACT
CAAAACTCAAAAGACGTTGGTAGCAAAATGAGAAGATGGAAATCGATTGG
TTTGATGACTGTAATCTAAAAACCGACCTTCTGAAATATGTCAAGCAAAA
TATGAAACGAAGTGAAATTTTGGACTATGTTGAACGAGATTTCCCCATGT
ACAATTGGAGCTTGAGAACTTTAGATAGAAGGCTTAGAGGCTTTGATATT
TATTATAATGATTTCAGTCTAAATGTAGAAGAGGTTGAAACTATTCTACG
CCAAGAACTGAACGGACCTGGAAAATTACTTGGGTATCGTGCAATGCATC
TCAAGTTGCGACAAAAATACGATATAAAAATACCGCGTGATTACGTATAC
GAGTTGATGCACGAAATAAACCCAGAGCTGATGAAGGACAGACAGCcttg
cttaaaaaagaaaaaaaagcggAAACACTTTGTGACGAAAGGACCAGACT
GGGTTTTTTCGCTGGACGGGCATGATAAATTAATGGGTTACCAAAACTCG
ACATTCCCCCTGGCAATTTATGGCTGTATAGACACAGCGAGTAGAAAGAT
AATGTTTCTCAAAGTCTGGGTTACGAACTCAAAGCCACAAGTGATTGGCC
GATGGTATACTGAATTTCTACGTGAAAATCAAATTGTCCCAGAATATTTA
AGAATTGATAAGGGAACTGAGACCACGACCATGGCCGAGATTCACTGTCA
TCTAAGACAAGAACATGGTGACTTAGAAGACTCGACATCATCAATTATAT
TTGGCCCTTCGACATCTAATCAGGCATGTTATTTATAATCTgaagttttt
ttctcttttaacaCACTAAATCTTTCTCTTTTAAAAACTATTTACAAGAT
CAAAACTTTTCATAAGTAAAATATCACCATGCAATATCACCAGTACAAGG
AATTTTCAGGGAATAATTGCTAACTGATTTCTATGATTTTGATATAACAG
ATTGAACGTTGGTGGAGAGAGCTCCATGATCGTTTGGAGAAGTTTTTCAA
AGCTGGTCTTTCCTGGCTTAAAGACGAAAATCACTACGACCCTCATTGTG
CACAAGATAGGTTAGTTGTTAAAGTAAATTTAATCTACATAGAAATAtac
acttttaaaaaaattgacctCTTAAAAAAGATATGCCAAAATGTAATATC
TGCTTGTTTGTTAACCCTAtctgccggggggggggggggggNTTAACCCT
ATCTGCCGGGGGGGGGGTCTTGGTTTTTTTCTCCTTTGAATTTTAACCGC
TTGCccaattcttttcaaatttcttgaCTTCTCTACAAATTCAAATATTA
CAGTCTGAGTGGCTGCAGATTCAACGATAACCGCCCAAaatgcaaaattt
aaaaaaaatatttttaaaattttaaattactaTAAAATCTGAACCACTAA
TAACTGCCCATTTATGAGTAACTACAGAAAACAGAAGTAAAAAAGCTTAT
TTCTACAAAGATCtgtctttttgaaaatacaGCCTAGTATTTTCCTCCAT
TCCGGTCAATTTTTTTGGCATGTGAAAATGACCCAAATaaaggaaaattt
ggaaaaaaatgtgcaAACTTCTTTGTATACAAAGTCTCTATGTACCAAAT
TCATGCCAAAACAGTCTTGAGTTTGGGGGTTCCGGGAAGCCCCTCCCCGG
GCAACACCAGACCCCAAATAACCCAGGGCAGATAGGGttaaagtgaaata
aaaataataaaaatagctaaaaaataaaaaatagctgAGTAACTAAAAAA
AATAGACCTTAAAATAAATGTTGTATCTACTCGTTTGTCgaacttaaata
aaaaaagctaaatAATTGAAAGTAAAAGCTAAAAACAAATCGAAAACAGT
TGTCAAAACTAAAAAGCCAActgaagaacaaaataaaacaacaataaGAC
CAAGAAGaataaattttccattttttagagATATGTTGGCATTTGTTATG
GTTCCCTTGGTTCAAAGACATTTGGACGAATTCAAAGATCTCATTTGGAA
CCCCCACAGAATAAGACACCAAAGAGACACATACATGGCTGATGGAGTAC
CAAACCATATGTATGATTTTCCCGCCAAATACTCGATGGAACAATGTGGT
ATGTGCTTTTATtcacttttcagaaaaattataTTCTCTAGTATCCTTCA
AGGGTACTCTTTTGTGTCTAATTGTAGGGGGGTTTAATAAGCGGAGGGGA
TGGGTGGTCTGGGAAAAAATCCACAAAATGGGGGGGGTGACAATAAAGTG
ATATTGGAGTGATTTTAGTGAttttccctaggaaaatgaaggtttttggc
ACTTTTAGGCAATATCAAGTCAAAAAGTCGTAAAATGAGGGGGGGTCATA
ATAAAGTGAGATTGGGggtgaaaaatcagaaaaattacaaagtgaCCCCC
CTACCTGCCCCTACAATTAGGGACAAAAGAGTACAAACTTttatagaaac
tttttttcgcggtttttggCCTAACCGTAAAATTTATATGAGAAAAATTA
TTGTGAAATAATCCATACACCCATATCAAATCGgcaataactttttaaaa
tccCTTTAACACAGTTTAACATTTCACATTTTAGGAAAACCACTCAACAA
AGACACACTTGATGAAGCTGTTCAAATTACAGGAGTTATGGATTATGGAA
TTGACTTTCTTCTCCCAGATCAACGAAACCATTACCAGCAGTTCGTGAAA
AATACTGTTACAGAATCTAATTATGTTCAAAGTTATCTAGATCTTAAATA
TAGTCAAGcttagtattttttttactaaatgaaatgTTATATAAAGTTTT
AATATATAACctagaacaaaaataaaatcgaGTAAAATATAAACGTAAGA
AATTGCTTCAAACAGTTGTGTAGTTNTGTAAAATTTATATGAGAAAAGTT
ATTGTGAAATAATCCATACACCCATATCAAATCGgcaataactttttaaa
atccCTTAACACAGTTTAACATTTCACATTTTAGGAAAACCACTCAACAA
AGACACACTTGATGAAGCTGTTCAAATTACAGGAGTTATGGATTATGGAA
TTGACTTTCTTCTCCCAGATCAACGAAACCATTACCAGCAGTTCGTGAAA
AATACTGTTACAGAATCTAATTATGTTCAAAGTTATCTAGATCTTAAATA
TAATCAAGCTTAGTATTTGTTTTACTAAATGAAATGTTATATAAAT
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00065154TCONS_00065154Clytia hemisphaericatranscript
TCONS_00065155TCONS_00065155Clytia hemisphaericatranscript
TCONS_00065156TCONS_00065156Clytia hemisphaericatranscript
TCONS_00065157TCONS_00065157Clytia hemisphaericatranscript
TCONS_00065158TCONS_00065158Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00065158-proteinTCONS_00065158-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_433supercontigscaffold_433:80456..83851 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.07	0.64	0.76	0.64	4.41	3.7	4.31	4.57	4.25	2.59	4.94	3.67	2.56	2.18	3.17	2.74	4.17	4.34	3.26	3.4	5.95	7.37	2.14	2.45	1.42	0.82	7.14	6.49	2.95	3.58