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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065154 ID=TCONS_00065154|Name=TCONS_00065154|organism=Clytia hemisphaerica|type=transcript|length=1425bp
ttttgttttatttttgtttttgttttaatttttttttcaaaaaattttga
aatgaaattaatttgattttttggcaATTGCTCAAAACTACTATACTCCG
AAACCACCTATGGATTTTCCCTATTGACAAGGGAAATTCCCATCGTAGCA
TAACAAACAAATAATTTCACGTGTGCGCGCACATCGTCTCTCTTTTCACT
CAAAACTCAAAAGACGTTGGTAGCAAAATGAGAAGATGGAAATCGATTGG
TTTGATGACTGTAATCTAAAAACCGACCTTCTGAAATATGTCAAGCAAAA
TATGAAACGAAGTGAAATTTTGGACTATGTTGAACGAGATTTCCCCATGT
ACAATTGGAGCTTGAGAACTTTAGATAGAAGGCTTAGAGGCTTTGATATT
TATTATAATGATTTCAGTCTAAATGTAGAAGAGGTTGAAACTATTCTACG
CCAAGAACTGAACGGACCTGGAAAATTACTTGGGTATCGTGCAATGCATC
TCAAGTTGCGACAAAAATACGATATAAAAATACCGCGTGATTACGTATAC
GAGTTGATGCACGAAATAAACCCAGAGCTGATGAAGGACAGACAGCcttg
cttaaaaaagaaaaaaaagcggAAACACTTTGTGACGAAAGGACCAGACT
GGGTTTTTTCGCTGGACGGGCATGATAAATTAATGGGTTACCAAAACTCG
ACATTCCCCCTGGCAATTTATGGCTGTATAGACACAGCGAGTAGAAAGAT
AATGTTTCTCAAAGTCTGGGTTACGAACTCAAAGCCACAAGTGATTGGCC
GATGGTATACTGAATTTCTACGTGAAAATCAAATTGTCCCAGAATATTTA
AGAATTGATAAGGGAACTGAGACCACGACCATGGCCGAGATTCACTGTCA
TCTAAGACAAGAACATGGTGACTTAGAAGACTCGACATCATCAATTATAT
TTGGCCCTTCGACATCTAATCAGagATATGTTGGCATTTGTTATGGTTCC
CTTGGTTCAAAGACATTTGGACGAATTCAAAGATCTCATTTGGAACCCCC
ACAGAATAAGACACCAAAGAGACACATACATGGCTGATGGAGTACCAAAC
CATATGTATGATTTTCCCGCCAAATACTCGATGGAACAATGTGGAAAACC
ACTCAACAAAGACACACTTGATGAAGCTGTTCAAATTACAGGAGTTATGG
ATTATGGAATTGACTTTCTTCTCCCAGATCAACGAAACCATTACCAGCAG
TTCGTGAAAAATACTGTTACAGAATCTAATTATGTTCAAAGTTATCTAGA
TCTTAAATATAGTCAAGcttagtattttttttactaaatgaaatgTTATA
TAAAGTTTTAATATATAACctagaacaaaaataaaatcgaGTAAAATATA
AACGTAAGAAATTGCTTCAAACAGT Run BLAST on NCBI transcript from alignment at scaffold_433:80456..83521+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065154 ID=TCONS_00065154|Name=TCONS_00065154|organism=Clytia hemisphaerica|type=transcript|length=3066bp|location=Sequence derived from alignment at scaffold_433:80456..83521+ (Clytia hemisphaerica)
ttttgttttatttttgtttttgttttaatttttttttcaaaaaattttga
aatgaaattaatttgattttttggcaATTGCTCAAAACTACTATACTCCG
AAACCACCTATGGATTTTCCCTATTGACAAGGGAAATTCCCATCGTAGCA
TAACAAACAAATAATTTCACGTGTGCGCGCACATCGTCTCTCTTTTCACT
CAAAACTCAAAAGACGTTGGTAGCAAAATGAGAAGATGGAAATCGATTGG
TTTGATGACTGTAATCTAAAAACCGACCTTCTGAAATATGTCAAGCAAAA
TATGAAACGAAGTGAAATTTTGGACTATGTTGAACGAGATTTCCCCATGT
ACAATTGGAGCTTGAGAACTTTAGATAGAAGGCTTAGAGGCTTTGATATT
TATTATAATGATTTCAGTCTAAATGTAGAAGAGGTTGAAACTATTCTACG
CCAAGAACTGAACGGACCTGGAAAATTACTTGGGTATCGTGCAATGCATC
TCAAGTTGCGACAAAAATACGATATAAAAATACCGCGTGATTACGTATAC
GAGTTGATGCACGAAATAAACCCAGAGCTGATGAAGGACAGACAGCcttg
cttaaaaaagaaaaaaaagcggAAACACTTTGTGACGAAAGGACCAGACT
GGGTTTTTTCGCTGGACGGGCATGATAAATTAATGGGTTACCAAAACTCG
ACATTCCCCCTGGCAATTTATGGCTGTATAGACACAGCGAGTAGAAAGAT
AATGTTTCTCAAAGTCTGGGTTACGAACTCAAAGCCACAAGTGATTGGCC
GATGGTATACTGAATTTCTACGTGAAAATCAAATTGTCCCAGAATATTTA
AGAATTGATAAGGGAACTGAGACCACGACCATGGCCGAGATTCACTGTCA
TCTAAGACAAGAACATGGTGACTTAGAAGACTCGACATCATCAATTATAT
TTGGCCCTTCGACATCTAATCAGGCATGTTATTTATAATCTgaagttttt
ttctcttttaacaCACTAAATCTTTCTCTTTTAAAAACTATTTACAAGAT
CAAAACTTTTCATAAGTAAAATATCACCATGCAATATCACCAGTACAAGG
AATTTTCAGGGAATAATTGCTAACTGATTTCTATGATTTTGATATAACAG
ATTGAACGTTGGTGGAGAGAGCTCCATGATCGTTTGGAGAAGTTTTTCAA
AGCTGGTCTTTCCTGGCTTAAAGACGAAAATCACTACGACCCTCATTGTG
CACAAGATAGGTTAGTTGTTAAAGTAAATTTAATCTACATAGAAATAtac
acttttaaaaaaattgacctCTTAAAAAAGATATGCCAAAATGTAATATC
TGCTTGTTTGTTAACCCTAtctgccggggggggggggggggNTTAACCCT
ATCTGCCGGGGGGGGGGTCTTGGTTTTTTTCTCCTTTGAATTTTAACCGC
TTGCccaattcttttcaaatttcttgaCTTCTCTACAAATTCAAATATTA
CAGTCTGAGTGGCTGCAGATTCAACGATAACCGCCCAAaatgcaaaattt
aaaaaaaatatttttaaaattttaaattactaTAAAATCTGAACCACTAA
TAACTGCCCATTTATGAGTAACTACAGAAAACAGAAGTAAAAAAGCTTAT
TTCTACAAAGATCtgtctttttgaaaatacaGCCTAGTATTTTCCTCCAT
TCCGGTCAATTTTTTTGGCATGTGAAAATGACCCAAATaaaggaaaattt
ggaaaaaaatgtgcaAACTTCTTTGTATACAAAGTCTCTATGTACCAAAT
TCATGCCAAAACAGTCTTGAGTTTGGGGGTTCCGGGAAGCCCCTCCCCGG
GCAACACCAGACCCCAAATAACCCAGGGCAGATAGGGttaaagtgaaata
aaaataataaaaatagctaaaaaataaaaaatagctgAGTAACTAAAAAA
AATAGACCTTAAAATAAATGTTGTATCTACTCGTTTGTCgaacttaaata
aaaaaagctaaatAATTGAAAGTAAAAGCTAAAAACAAATCGAAAACAGT
TGTCAAAACTAAAAAGCCAActgaagaacaaaataaaacaacaataaGAC
CAAGAAGaataaattttccattttttagagATATGTTGGCATTTGTTATG
GTTCCCTTGGTTCAAAGACATTTGGACGAATTCAAAGATCTCATTTGGAA
CCCCCACAGAATAAGACACCAAAGAGACACATACATGGCTGATGGAGTAC
CAAACCATATGTATGATTTTCCCGCCAAATACTCGATGGAACAATGTGGT
ATGTGCTTTTATtcacttttcagaaaaattataTTCTCTAGTATCCTTCA
AGGGTACTCTTTTGTGTCTAATTGTAGGGGGGTTTAATAAGCGGAGGGGA
TGGGTGGTCTGGGAAAAAATCCACAAAATGGGGGGGGTGACAATAAAGTG
ATATTGGAGTGATTTTAGTGAttttccctaggaaaatgaaggtttttggc
ACTTTTAGGCAATATCAAGTCAAAAAGTCGTAAAATGAGGGGGGGTCATA
ATAAAGTGAGATTGGGggtgaaaaatcagaaaaattacaaagtgaCCCCC
CTACCTGCCCCTACAATTAGGGACAAAAGAGTACAAACTTttatagaaac
tttttttcgcggtttttggCCTAACCGTAAAATTTATATGAGAAAAATTA
TTGTGAAATAATCCATACACCCATATCAAATCGgcaataactttttaaaa
tccCTTTAACACAGTTTAACATTTCACATTTTAGGAAAACCACTCAACAA
AGACACACTTGATGAAGCTGTTCAAATTACAGGAGTTATGGATTATGGAA
TTGACTTTCTTCTCCCAGATCAACGAAACCATTACCAGCAGTTCGTGAAA
AATACTGTTACAGAATCTAATTATGTTCAAAGTTATCTAGATCTTAAATA
TAGTCAAGcttagtattttttttactaaatgaaatgTTATATAAAGTTTT
AATATATAACctagaacaaaaataaaatcgaGTAAAATATAAACGTAAGA
AATTGCTTCAAACAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00065154-exon-scaffold_433-1491911889:80456..81428 | TCONS_00065154-exon-scaffold_433-1491911889:80456..81428 | Clytia hemisphaerica | exon |
| TCONS_00065154-exon-scaffold_433-1510915933:80456..81428 | TCONS_00065154-exon-scaffold_433-1510915933:80456..81428 | Clytia hemisphaerica | exon |
| TCONS_00065154-exon-scaffold_433-1575043694:80456..81428 | TCONS_00065154-exon-scaffold_433-1575043694:80456..81428 | Clytia hemisphaerica | exon |
| TCONS_00065154-exon-scaffold_433-1491911889:82584..82753 | TCONS_00065154-exon-scaffold_433-1491911889:82584..82753 | Clytia hemisphaerica | exon |
| TCONS_00065154-exon-scaffold_433-1510915933:82584..82753 | TCONS_00065154-exon-scaffold_433-1510915933:82584..82753 | Clytia hemisphaerica | exon |
| TCONS_00065154-exon-scaffold_433-1575043694:82584..82753 | TCONS_00065154-exon-scaffold_433-1575043694:82584..82753 | Clytia hemisphaerica | exon |
| TCONS_00065154-exon-scaffold_433-1491911889:83240..83521 | TCONS_00065154-exon-scaffold_433-1491911889:83240..83521 | Clytia hemisphaerica | exon |
| TCONS_00065154-exon-scaffold_433-1510915933:83240..83521 | TCONS_00065154-exon-scaffold_433-1510915933:83240..83521 | Clytia hemisphaerica | exon |
| TCONS_00065154-exon-scaffold_433-1575043694:83240..83521 | TCONS_00065154-exon-scaffold_433-1575043694:83240..83521 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_433 | supercontig | scaffold_433:80456..83521 + |
Blast
The following BLAST results are available for this feature:
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