XLOC_040161 (gene) - C. hemisphaerica

Overview
NameXLOC_040161
Unique NameXLOC_040161
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_407:44777..48430-

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_040161 ID=XLOC_040161|Name=XLOC_040161|organism=Clytia hemisphaerica|type=gene|length=3654bp|location=Sequence derived from alignment at scaffold_407:44777..48430- (Clytia hemisphaerica)
TTTTGTTGTTGATCACACATATATATTATTGATGTAAGAGTTCCAAGTGA
GACTTTTAGTAAGAGTATAGGTATTCAACCTTCTCTACCAGTTTTACGTT
GTTATAGGATTCTACAAGAGTGATTCTTTTACTCATAACAAATTAGATTT
GGCAGGAATTTAATATGGTGGATGATAGAAGAAACCTTTTTTGCAGAAAC
TTAATTTTGGCAGATTTCTGGTAAATCTGCAAAAAAAATCATGAGTAGAA
TAAATTATGTGAAGACTTTAACTTAATCGAAGGATATCTGCCCTTTTGTC
ATCATCCTTTGCTGAAAAAATAGGAAAGAAACATAAAAAATGAATAATTA
GGTCCTAAATCTACAAAATTTTTTACATTGTAAACTCTTTAGTACACAAT
AATTGTGCAACTTTATTGTATTCCCAACATTTTTTTACCTTAGCAAAAAG
AAATCTTTAAAAGCAACAAAATACCATATCACAAAATATTCATGTAAGTA
TTTTTGTGATTGTGTTACCATGCCTCGATCAGAATCATTGATCATCAAAT
TTGAATAACACTTGTGCATTATGATACTTCTTCGTCAAACTTTTAACGTC
ATGGGTTTTAAGTAGTATGCTTCGAAAAATTTAGTTAGCTTTTATATGAT
AAATGGAAATTGTTTCAATAAAGAGCCAATCAACCTTAAAATATGATTAG
TAACAGCAACAAGAATGGCAGATGAAAGTAAAGATGAGAAAGAAAGTTAT
TTTTTTTGTCGTGAGGAATTTCTTTAGGATTCCTCATTCATACTGCTACT
GTTATTTTACCTCTAAACCTATTTAAGGCTATTTAGATCCACCTGGAACT
TGGGTAGCTCTATTTCAAGATTACACAAACACTTCAACTTTACACCTCAA
CTGATATTAATCACAAGAAATCATTCCAATATGCGGCGCTGGAAGCAACT
TGAAGGAGAAAGTGAACTGAAACTTTACAACAGTCTTACCAGAGAAAAGG
TAAATTATAATGTTTGTTACCTTTTTCCCTTTTCTCTACTATTTTCTGGA
AGTTTCAAGCATCAAGGCATCAAATAGTATTTTTGTCTTGATCCTTTGTC
AAAATATTATACTACTTTTTTCCCAATTATAGTTTCTTTTGTTTTCAAAT
AATTGTTATAATCATTTTGATTCTCTAAATTTTGAAATGGTAATATTATT
ATCTTTCTATTTGTTATAGAATCCATTCATACCACATGAAGGAAAACAAG
TTTTTTGGTACAGTTGTGGCCCCACTGTTTATGATGCTTCCCATATGGGT
CATGCAAGGTTTGCAAATCCCCTTTGAAGTAAACATATTTTTCTGTATGG
AACCAAGTTGCTAATGTACAAAATTAGGAAGTTGTCAGAAAATGAGCATT
GCTAAGCAAACCCAGCCCTGACCTGGAAATTGGAGTTACTTATAAAAAAC
ATAATGTGTAAACGGAAATGAGATTTCATGGTTTATAAAACGTTCCAACT
TATCTTTTGGATTTATAAATAAAGTTGCATTTTTTTCTATTTTCAACCTT
TGCTTTGACTTGAGAATCTTAATTTAGCTCAACTTACCTTCGATTATATT
ATGATAGATTATCAAATTTTTCATTTTAGATCTTACATCACCTTCGATAT
TTTAAGAAGAGTTCTTTCAGATTATTTCAACTACGACATTTTTTATGTAA
TGAACATCACTGATATTGATGATAAGGTACTTATTGTTTTTTTGCATTTT
CTCTTTCTGAATTACTCGTGGGTTTGAATATCTGAAAAAGTTAAAAATAT
TTTTTAAAACACAAAGCGTTCTAGTATTCTCCTAGTCAAGAGTCCCTATA
TTGTCAGTTTTATTATTTCTTTGAAGTTACATGATCTTAATAATCTCAAT
TTAAATTTTAATTTCATTCAGAATAGCTTTTTTTCTCCATATCTGAACTG
AATATAAATTTTCAGAATAAAGAAAACACATCTATTTAGAAGATGTTTTG
CTCATATCTTTGAGCACTATCCAGTCTAAAAGAGAAAAAATAACAAATTA
GTCCTAAATAAATCAGATAAATTAAAAAGAAAAAAAAATCTTGAAAAAAA
TACACCCTCTTTCAAACACAAACAAATTACATTAGTTTGATGCTTGTTTG
ACTAACAATTTTAATATTAATCATAATGTTTCTCAGATTATAAACAGAGC
AAGGCGGAATCATTTAATGAAAGAATACAGAGATGGAAACCCAGAAGCAA
AAACTGTTCTTGATGACCTTCAAGAAGCTTTAGTGGTTGGTGAATCTTTG
TGTCTTGTATTTAAAACCTCAACCAAGTTCAAAAAATATAATCCAAAATG
TGTATTTAAAAAAATTCACTTTTTTCCGTACATAATTTCTAAAATAACCA
GCACCGAGATTGCCAAATCCCAATTTCTTTAGTTTGCTTCCCAATCTTTA
TACTCTCTTGTTTTAAGGCTGTTTTGTTTTATGTTTTGACTTCATTAGAG
AAAGACTGTATACTTTAAACGATATTAATCAAAGATTAGACTAATTTAAA
CTTCTCCTTAAAAGACACAAAATATACTGGTTGAATTTATTCTCTCGTTT
AAGGCTTTCGTTGCAAAGATAGAAAAAACAACAGACCCTGATAAAAAGAA
TATGCTGAAAAAAATCATGGTATATTTAAATATGAAATTTTATTCTGATA
AGATTTCCTAATTTAAACAATTGGATTTATAAAGTTGTTTCTTTGGTGGA
GTTGATATTATCTTTAAATTAATTTGAAGTGGTTCAAACATGTACGCTTA
TATGTTTTTGGGTAGGAAAATGTGAAGAATGCGCAAGGAATTTTGGAGAC
TGCTATCAAAGAATCTAAAGAAATTGAGAAATCCACTAATGTAAGTTCGT
TAACAATCATATGTTTGATAAAGTTATTTGCTTTTGCAAATTCTTCATTA
TATCCTAAGTTTTTCCTTCAAATTCAGCACTCTCATGCTCTGCCTTATTA
TAGGACATCTCACAATCATAGTTTAAGACTTGATGGTCTTCCATTTTATT
TGAATTCTTTTCAATAATTTCCCCTACCATTTTAGCATAATTTCTTTACT
TTTTTTCCAAGAACGTTTTTTTAAATGCACCTAACGAAACTGCAAAAATT
GAACTATAATGTTAGTTAATACTGATATTTATTTATTTTTCATATTTTTT
GTAGGAATTACTTGATGCTGCAAATGATCCTTTAGCCGATCTCCTCGATA
AAAAGGTTAAAATCACTTTTTGACAGCCGGGTGATAAATAACCGTAAATG
TATGAAAGTTTTGCGTTCAGAGGAGGTGCCTAGGGATATCCTGAGCATAG
TGCAGTCCAACTGAATAAATGTGTTTTCTGTTATGGCAAAATATCGGATG
GTAGCTTTAAAGATAAAGCATTGTAGTTAATAAATATTTGAATTAATTTC
TGCCCTGCAAAGGTATAGAGCTCTTTATTCATAAAACTTTCTTTACTTTT
TGATTAGCAGCAAGAAAGAAATTAACTAACAAAATATCTTCATCTTTCTC
ACTTAAACAGTTTGGTGCAAAGGTGACAGACTTCAAGATATTCAGTAAAC
TGACACAATATTGGGAAAATGAATACCATGAAGATATGAAAAATCTCAAT
GTAT
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00064055TCONS_00064055Clytia hemisphaericatranscript
TCONS_00064054TCONS_00064054Clytia hemisphaericatranscript
TCONS_00064053TCONS_00064053Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00064054-proteinTCONS_00064054-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_407supercontigscaffold_407:44777..48430 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
61.99	58.61	53.34	42.19	57.37	43.93	97	105.88	62.16	79.46	39.22	39.77	29.03	21.17	30.79	34.78	55.56	47.33	13.39	24.46	34.85	39.97	42.21	44.72	39.76	49.53	30.3	18.26	46.66	35.82