TCONS_00064054-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00064054-protein
Unique NameTCONS_00064054-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length248

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00064054-protein ID=TCONS_00064054-protein|Name=TCONS_00064054-protein|organism=Clytia hemisphaerica|type=polypeptide|length=248bp
MLFRSTWNLGSSISRLHKHFNFTPQLILITRNHSNMRRWKQLEGESELKL
YNSLTREKNPFIPHEGKQVFWYSCGPTVYDASHMGHARSYITFDILRRVL
SDYFNYDIFYVMNITDIDDKIINRARRNHLMKEYRDGNPEAKTVLDDLQE
ALVAFVAKIEKTTDPDKKNMLKKIMENVKNAQGILETAIKESKEIEKSTN
ELLDAANDPLADLLDKKFGAKVTDFKIFSKLTQYWENEYHEDMKNLNV
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_040161XLOC_040161Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00064054TCONS_00064054Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR024909Cys-tRNA/MSH_ligase
IPR014729Rossmann-like_a/b/a_fold
IPR032678tRNA-synt_1_cat_dom
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 171..191
NoneNo IPR availableSUPERFAMILY52374Nucleotidylyl transferasecoord: 47..125
coord: 222..248
IPR024909Cysteinyl-tRNA synthetase/mycothiol ligasePRINTSPR00983TRNASYNTHCYScoord: 71..82
score: 65.53
coord: 108..117
score: 57.27
IPR014729Rossmann-like alpha/beta/alpha sandwich foldGENE3D3.40.50.620coord: 28..248
e-value: 6.8E-31
score: 106.8
IPR032678tRNA synthetases class I, catalytic domainPFAMPF01406tRNA-synt_1ecoord: 63..248
e-value: 8.7E-34
score: 117.1

Blast
[Close]
BLAST of TCONS_00064054-protein vs. Swiss-Prot (Human)
Match: SYCC (Cysteine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=CARS PE=1 SV=3)

HSP 1 Score: 249.98 bits (637), Expect = 3.651e-78
Identity = 119/204 (58.33%), Postives = 147/204 (72.06%), Query Frame = 0 
Query:   48 LKLYNSLTREKNPFIPHEGKQVFWYSCGPTVYDASHMGHARSYITFDILRRVLSDYFNYDIFYVMNITDIDDKIINRARRNHLMKEYRDGNPEAKTVLDDLQEALVAFVAKIEKTTDPDKKNMLKKIMENVKNAQGILETAIKE---SKEIEKSTNELLDAANDPLADLLDKKFGAKVTDFKIFSKLTQYWENEYHEDMKNLNV 248
            L LYNSLTR K  FIP +GK+V WY CGPTVYDASHMGHARSYI+FDILRRVL DYF +D+FY MNITDIDDKII RAR+NHL ++YR+  PEA  +L+D+Q AL  F  K+ +TTDPDKK ML++I   V+ A   LE A++     +E+      LL+ A D L+D LD   G  VTD  IFSKL ++WE ++H DM+ LNV
Sbjct:   29 LHLYNSLTRNKEVFIPQDGKKVTWYCCGPTVYDASHMGHARSYISFDILRRVLKDYFKFDVFYCMNITDIDDKIIKRARQNHLFEQYREKRPEAAQLLEDVQAALKPFSVKLNETTDPDKKQMLERIQHAVQLATEPLEKAVQSRLTGEEVNSCVEVLLEEAKDLLSDWLDSTLGCDVTDNSIFSKLPKFWEGDFHRDMEALNV 232
The following BLAST results are available for this feature:
BLAST of TCONS_00064054-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SYCC3.651e-7858.33Cysteine--tRNA ligase, cytoplasmic OS=Homo sapiens... [more]
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