TCONS_00064054 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064054
Unique NameTCONS_00064054
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length826

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064054 ID=TCONS_00064054|Name=TCONS_00064054|organism=Clytia hemisphaerica|type=transcript|length=826bp
ttttgttgttgatcACACATATATATTATTGATcaaaaagaaatctttaa
aaGCAACAAAATACCATATCACAAAATATTCATGCTATTTAGATCCACCT
GGAACTTGGGTAGCTCTATTTCAAGATTACACAAACACTTCAACTTTACA
CCTCAACTGATATTAATCACAAGAAATCATTCCAATATGCGGCGCTGGAA
GCAACTTGAAGGAGAAAGTGAACTGAAACTTTACAACAGTCTTACCAGAG
AAAAGAATCCATTCATACCACATGAAGGAAAACAAGTTTTTTGGTACAGT
TGTGGCCCCACTGTTTATGATGCTTCCCATATGGGTCATGCAAGatcTTA
CATCACCTTCGATATTTTAAGAAGAGTTCTTTCAGATTATTTCAACTACG
ACATTTTTTATGTAATGAACATCACTGATATTGATGATAAGATTATAAAC
AGAGCAAGGCGGAATCATTTAATGAAAGAATACAGAGATGGAAACCCAGA
AGCAAAAACTGTTCTTGATGACCTTCAAGAAGCTTTAGTGGCTTTCGTTG
CAAAGATAGAAAAAACAACAGACCCTGATAAAAAGAATatgctgaaaaaa
atcatgGAAAATGTGAAGAATGCGCAAGGAATTTTGGAGACTGCTATCAA
AGAATCTAAAGAAATTGAGAAATCCACTAATGAATTACTTGATGCTGCAA
ATGATCCTTTAGCCGATCTCCTCgataaaaagTTTGGTGCAAAGGTGACA
GACTTCAAGATATTCAGTAAACTGACACAATATTGGGAAAATGAATACCA
TGAAgatatgaaaaatctcaatgtAT
Run BLAST on NCBI

protein sequence of TCONS_00064054-protein

>TCONS_00064054-protein ID=TCONS_00064054-protein|Name=TCONS_00064054-protein|organism=Clytia hemisphaerica|type=polypeptide|length=248bp
MLFRSTWNLGSSISRLHKHFNFTPQLILITRNHSNMRRWKQLEGESELKL
YNSLTREKNPFIPHEGKQVFWYSCGPTVYDASHMGHARSYITFDILRRVL
SDYFNYDIFYVMNITDIDDKIINRARRNHLMKEYRDGNPEAKTVLDDLQE
ALVAFVAKIEKTTDPDKKNMLKKIMENVKNAQGILETAIKESKEIEKSTN
ELLDAANDPLADLLDKKFGAKVTDFKIFSKLTQYWENEYHEDMKNLNV
Run BLAST on NCBI

transcript from alignment at scaffold_407:44777..48430-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064054 ID=TCONS_00064054|Name=TCONS_00064054|organism=Clytia hemisphaerica|type=transcript|length=3654bp|location=Sequence derived from alignment at scaffold_407:44777..48430- (Clytia hemisphaerica)
TTTTGTTGTTGATCACACATATATATTATTGATGTAAGAGTTCCAAGTGA
GACTTTTAGTAAGAGTATAGGTATTCAACCTTCTCTACCAGTTTTACGTT
GTTATAGGATTCTACAAGAGTGATTCTTTTACTCATAACAAATTAGATTT
GGCAGGAATTTAATATGGTGGATGATAGAAGAAACCTTTTTTGCAGAAAC
TTAATTTTGGCAGATTTCTGGTAAATCTGCAAAAAAAATCATGAGTAGAA
TAAATTATGTGAAGACTTTAACTTAATCGAAGGATATCTGCCCTTTTGTC
ATCATCCTTTGCTGAAAAAATAGGAAAGAAACATAAAAAATGAATAATTA
GGTCCTAAATCTACAAAATTTTTTACATTGTAAACTCTTTAGTACACAAT
AATTGTGCAACTTTATTGTATTCCCAACATTTTTTTACCTTAGCAAAAAG
AAATCTTTAAAAGCAACAAAATACCATATCACAAAATATTCATGTAAGTA
TTTTTGTGATTGTGTTACCATGCCTCGATCAGAATCATTGATCATCAAAT
TTGAATAACACTTGTGCATTATGATACTTCTTCGTCAAACTTTTAACGTC
ATGGGTTTTAAGTAGTATGCTTCGAAAAATTTAGTTAGCTTTTATATGAT
AAATGGAAATTGTTTCAATAAAGAGCCAATCAACCTTAAAATATGATTAG
TAACAGCAACAAGAATGGCAGATGAAAGTAAAGATGAGAAAGAAAGTTAT
TTTTTTTGTCGTGAGGAATTTCTTTAGGATTCCTCATTCATACTGCTACT
GTTATTTTACCTCTAAACCTATTTAAGGCTATTTAGATCCACCTGGAACT
TGGGTAGCTCTATTTCAAGATTACACAAACACTTCAACTTTACACCTCAA
CTGATATTAATCACAAGAAATCATTCCAATATGCGGCGCTGGAAGCAACT
TGAAGGAGAAAGTGAACTGAAACTTTACAACAGTCTTACCAGAGAAAAGG
TAAATTATAATGTTTGTTACCTTTTTCCCTTTTCTCTACTATTTTCTGGA
AGTTTCAAGCATCAAGGCATCAAATAGTATTTTTGTCTTGATCCTTTGTC
AAAATATTATACTACTTTTTTCCCAATTATAGTTTCTTTTGTTTTCAAAT
AATTGTTATAATCATTTTGATTCTCTAAATTTTGAAATGGTAATATTATT
ATCTTTCTATTTGTTATAGAATCCATTCATACCACATGAAGGAAAACAAG
TTTTTTGGTACAGTTGTGGCCCCACTGTTTATGATGCTTCCCATATGGGT
CATGCAAGGTTTGCAAATCCCCTTTGAAGTAAACATATTTTTCTGTATGG
AACCAAGTTGCTAATGTACAAAATTAGGAAGTTGTCAGAAAATGAGCATT
GCTAAGCAAACCCAGCCCTGACCTGGAAATTGGAGTTACTTATAAAAAAC
ATAATGTGTAAACGGAAATGAGATTTCATGGTTTATAAAACGTTCCAACT
TATCTTTTGGATTTATAAATAAAGTTGCATTTTTTTCTATTTTCAACCTT
TGCTTTGACTTGAGAATCTTAATTTAGCTCAACTTACCTTCGATTATATT
ATGATAGATTATCAAATTTTTCATTTTAGATCTTACATCACCTTCGATAT
TTTAAGAAGAGTTCTTTCAGATTATTTCAACTACGACATTTTTTATGTAA
TGAACATCACTGATATTGATGATAAGGTACTTATTGTTTTTTTGCATTTT
CTCTTTCTGAATTACTCGTGGGTTTGAATATCTGAAAAAGTTAAAAATAT
TTTTTAAAACACAAAGCGTTCTAGTATTCTCCTAGTCAAGAGTCCCTATA
TTGTCAGTTTTATTATTTCTTTGAAGTTACATGATCTTAATAATCTCAAT
TTAAATTTTAATTTCATTCAGAATAGCTTTTTTTCTCCATATCTGAACTG
AATATAAATTTTCAGAATAAAGAAAACACATCTATTTAGAAGATGTTTTG
CTCATATCTTTGAGCACTATCCAGTCTAAAAGAGAAAAAATAACAAATTA
GTCCTAAATAAATCAGATAAATTAAAAAGAAAAAAAAATCTTGAAAAAAA
TACACCCTCTTTCAAACACAAACAAATTACATTAGTTTGATGCTTGTTTG
ACTAACAATTTTAATATTAATCATAATGTTTCTCAGATTATAAACAGAGC
AAGGCGGAATCATTTAATGAAAGAATACAGAGATGGAAACCCAGAAGCAA
AAACTGTTCTTGATGACCTTCAAGAAGCTTTAGTGGTTGGTGAATCTTTG
TGTCTTGTATTTAAAACCTCAACCAAGTTCAAAAAATATAATCCAAAATG
TGTATTTAAAAAAATTCACTTTTTTCCGTACATAATTTCTAAAATAACCA
GCACCGAGATTGCCAAATCCCAATTTCTTTAGTTTGCTTCCCAATCTTTA
TACTCTCTTGTTTTAAGGCTGTTTTGTTTTATGTTTTGACTTCATTAGAG
AAAGACTGTATACTTTAAACGATATTAATCAAAGATTAGACTAATTTAAA
CTTCTCCTTAAAAGACACAAAATATACTGGTTGAATTTATTCTCTCGTTT
AAGGCTTTCGTTGCAAAGATAGAAAAAACAACAGACCCTGATAAAAAGAA
TATGCTGAAAAAAATCATGGTATATTTAAATATGAAATTTTATTCTGATA
AGATTTCCTAATTTAAACAATTGGATTTATAAAGTTGTTTCTTTGGTGGA
GTTGATATTATCTTTAAATTAATTTGAAGTGGTTCAAACATGTACGCTTA
TATGTTTTTGGGTAGGAAAATGTGAAGAATGCGCAAGGAATTTTGGAGAC
TGCTATCAAAGAATCTAAAGAAATTGAGAAATCCACTAATGTAAGTTCGT
TAACAATCATATGTTTGATAAAGTTATTTGCTTTTGCAAATTCTTCATTA
TATCCTAAGTTTTTCCTTCAAATTCAGCACTCTCATGCTCTGCCTTATTA
TAGGACATCTCACAATCATAGTTTAAGACTTGATGGTCTTCCATTTTATT
TGAATTCTTTTCAATAATTTCCCCTACCATTTTAGCATAATTTCTTTACT
TTTTTTCCAAGAACGTTTTTTTAAATGCACCTAACGAAACTGCAAAAATT
GAACTATAATGTTAGTTAATACTGATATTTATTTATTTTTCATATTTTTT
GTAGGAATTACTTGATGCTGCAAATGATCCTTTAGCCGATCTCCTCGATA
AAAAGGTTAAAATCACTTTTTGACAGCCGGGTGATAAATAACCGTAAATG
TATGAAAGTTTTGCGTTCAGAGGAGGTGCCTAGGGATATCCTGAGCATAG
TGCAGTCCAACTGAATAAATGTGTTTTCTGTTATGGCAAAATATCGGATG
GTAGCTTTAAAGATAAAGCATTGTAGTTAATAAATATTTGAATTAATTTC
TGCCCTGCAAAGGTATAGAGCTCTTTATTCATAAAACTTTCTTTACTTTT
TGATTAGCAGCAAGAAAGAAATTAACTAACAAAATATCTTCATCTTTCTC
ACTTAAACAGTTTGGTGCAAAGGTGACAGACTTCAAGATATTCAGTAAAC
TGACACAATATTGGGAAAATGAATACCATGAAGATATGAAAAATCTCAAT
GTAT

Coding sequence (CDS) from alignment at scaffold_407:44777..48430-

>TCONS_00064054 ID=TCONS_00064054|Name=TCONS_00064054|organism=Clytia hemisphaerica|type=CDS|length=6696bp|location=Sequence derived from alignment at scaffold_407:44777..48430- (Clytia hemisphaerica)
TTTGGTGCAAAGGTGACAGACTTCAAGATATTCAGTAAACTGACACAATA
TTGGGAAAATGAATACCATGAAGATATGAAAAATCTCAATGTAGAATTAC
TTGATGCTGCAAATGATCCTTTAGCCGATCTCCTCGATAAAAAGGAAAAT
GTGAAGAATGCGCAAGGAATTTTGGAGACTGCTATCAAAGAATCTAAAGA
AATTGAGAAATCCACTAATGCTTTCGTTGCAAAGATAGAAAAAACAACAG
ACCCTGATAAAAAGAATATGCTGAAAAAAATCATGATTATAAACAGAGCA
AGGCGGAATCATTTAATGAAAGAATACAGAGATGGAAACCCAGAAGCAAA
AACTGTTCTTGATGACCTTCAAGAAGCTTTAGTGATCTTACATCACCTTC
GATATTTTAAGAAGAGTTCTTTCAGATTATTTCAACTACGACATTTTTTA
TGTAATGAACATCACTGATATTGATGATAAGAATCCATTCATACCACATG
AAGGAAAACAAGTTTTTTGGTACAGTTGTGGCCCCACTGTTTATGATGCT
TCCCATATGGGTCATGCAAGGCTATTTAGATCCACCTGGAACTTGGGTAG
CTCTATTTCAAGATTACACAAACACTTCAACTTTACACCTCAACTGATAT
TAATCACAAGAAATCATTCCAATATGCGGCGCTGGAAGCAACTTGAAGGA
GAAAGTGAACTGAAACTTTACAACAGTCTTACCAGAGAAAAGATTTTGGT
GCAAAGGTGACAGACTTCAAGATATTCAGTAAACTGACACAATATTGGGA
AAATGAATACCATGAAGATATGAAAAATCTCAATGTAGAATTACTTGATG
CTGCAAATGATCCTTTAGCCGATCTCCTCGATAAAAAGGAAAATGTGAAG
AATGCGCAAGGAATTTTGGAGACTGCTATCAAAGAATCTAAAGAAATTGA
GAAATCCACTAATGCTTTCGTTGCAAAGATAGAAAAAACAACAGACCCTG
ATAAAAAGAATATGCTGAAAAAAATCATGATTATAAACAGAGCAAGGCGG
AATCATTTAATGAAAGAATACAGAGATGGAAACCCAGAAGCAAAAACTGT
TCTTGATGACCTTCAAGAAGCTTTAGTGATCTTACATCACCTTCGATATT
TTAAGAAGAGTTCTTTCAGATTATTTCAACTACGACATTTTTTATGTAAT
GAACATCACTGATATTGATGATAAGAATCCATTCATACCACATGAAGGAA
AACAAGTTTTTTGGTACAGTTGTGGCCCCACTGTTTATGATGCTTCCCAT
ATGGGTCATGCAAGGCTATTTAGATCCACCTGGAACTTGGGTAGCTCTAT
TTCAAGATTACACAAACACTTCAACTTTACACCTCAACTGATATTAATCA
CAAGAAATCATTCCAATATGCGGCGCTGGAAGCAACTTGAAGGAGAAAGT
GAACTGAAACTTTACAACAGTCTTACCAGAGAAAAGATTTTGGTGCAAAG
GTGACAGACTTCAAGATATTCAGTAAACTGACACAATATTGGGAAAATGA
ATACCATGAAGATATGAAAAATCTCAATGTAGAATTACTTGATGCTGCAA
ATGATCCTTTAGCCGATCTCCTCGATAAAAAGGAAAATGTGAAGAATGCG
CAAGGAATTTTGGAGACTGCTATCAAAGAATCTAAAGAAATTGAGAAATC
CACTAATGCTTTCGTTGCAAAGATAGAAAAAACAACAGACCCTGATAAAA
AGAATATGCTGAAAAAAATCATGATTATAAACAGAGCAAGGCGGAATCAT
TTAATGAAAGAATACAGAGATGGAAACCCAGAAGCAAAAACTGTTCTTGA
TGACCTTCAAGAAGCTTTAGTGATCTTACATCACCTTCGATATTTTAAGA
AGAGTTCTTTCAGATTATTTCAACTACGACATTTTTTATGTAATGAACAT
CACTGATATTGATGATAAGAATCCATTCATACCACATGAAGGAAAACAAG
TTTTTTGGTACAGTTGTGGCCCCACTGTTTATGATGCTTCCCATATGGGT
CATGCAAGGCTATTTAGATCCACCTGGAACTTGGGTAGCTCTATTTCAAG
ATTACACAAACACTTCAACTTTACACCTCAACTGATATTAATCACAAGAA
ATCATTCCAATATGCGGCGCTGGAAGCAACTTGAAGGAGAAAGTGAACTG
AAACTTTACAACAGTCTTACCAGAGAAAAGATTTTGGTGCAAAGGTGACA
GACTTCAAGATATTCAGTAAACTGACACAATATTGGGAAAATGAATACCA
TGAAGATATGAAAAATCTCAATGTAGAATTACTTGATGCTGCAAATGATC
CTTTAGCCGATCTCCTCGATAAAAAGGAAAATGTGAAGAATGCGCAAGGA
ATTTTGGAGACTGCTATCAAAGAATCTAAAGAAATTGAGAAATCCACTAA
TGCTTTCGTTGCAAAGATAGAAAAAACAACAGACCCTGATAAAAAGAATA
TGCTGAAAAAAATCATGATTATAAACAGAGCAAGGCGGAATCATTTAATG
AAAGAATACAGAGATGGAAACCCAGAAGCAAAAACTGTTCTTGATGACCT
TCAAGAAGCTTTAGTGATCTTACATCACCTTCGATATTTTAAGAAGAGTT
CTTTCAGATTATTTCAACTACGACATTTTTTATGTAATGAACATCACTGA
TATTGATGATAAGAATCCATTCATACCACATGAAGGAAAACAAGTTTTTT
GGTACAGTTGTGGCCCCACTGTTTATGATGCTTCCCATATGGGTCATGCA
AGGCTATTTAGATCCACCTGGAACTTGGGTAGCTCTATTTCAAGATTACA
CAAACACTTCAACTTTACACCTCAACTGATATTAATCACAAGAAATCATT
CCAATATGCGGCGCTGGAAGCAACTTGAAGGAGAAAGTGAACTGAAACTT
TACAACAGTCTTACCAGAGAAAAGATTTTGGTGCAAAGGTGACAGACTTC
AAGATATTCAGTAAACTGACACAATATTGGGAAAATGAATACCATGAAGA
TATGAAAAATCTCAATGTAGAATTACTTGATGCTGCAAATGATCCTTTAG
CCGATCTCCTCGATAAAAAGGAAAATGTGAAGAATGCGCAAGGAATTTTG
GAGACTGCTATCAAAGAATCTAAAGAAATTGAGAAATCCACTAATGCTTT
CGTTGCAAAGATAGAAAAAACAACAGACCCTGATAAAAAGAATATGCTGA
AAAAAATCATGATTATAAACAGAGCAAGGCGGAATCATTTAATGAAAGAA
TACAGAGATGGAAACCCAGAAGCAAAAACTGTTCTTGATGACCTTCAAGA
AGCTTTAGTGATCTTACATCACCTTCGATATTTTAAGAAGAGTTCTTTCA
GATTATTTCAACTACGACATTTTTTATGTAATGAACATCACTGATATTGA
TGATAAGAATCCATTCATACCACATGAAGGAAAACAAGTTTTTTGGTACA
GTTGTGGCCCCACTGTTTATGATGCTTCCCATATGGGTCATGCAAGGCTA
TTTAGATCCACCTGGAACTTGGGTAGCTCTATTTCAAGATTACACAAACA
CTTCAACTTTACACCTCAACTGATATTAATCACAAGAAATCATTCCAATA
TGCGGCGCTGGAAGCAACTTGAAGGAGAAAGTGAACTGAAACTTTACAAC
AGTCTTACCAGAGAAAAGATTTTGGTGCAAAGGTGACAGACTTCAAGATA
TTCAGTAAACTGACACAATATTGGGAAAATGAATACCATGAAGATATGAA
AAATCTCAATGTAGAATTACTTGATGCTGCAAATGATCCTTTAGCCGATC
TCCTCGATAAAAAGGAAAATGTGAAGAATGCGCAAGGAATTTTGGAGACT
GCTATCAAAGAATCTAAAGAAATTGAGAAATCCACTAATGCTTTCGTTGC
AAAGATAGAAAAAACAACAGACCCTGATAAAAAGAATATGCTGAAAAAAA
TCATGATTATAAACAGAGCAAGGCGGAATCATTTAATGAAAGAATACAGA
GATGGAAACCCAGAAGCAAAAACTGTTCTTGATGACCTTCAAGAAGCTTT
AGTGATCTTACATCACCTTCGATATTTTAAGAAGAGTTCTTTCAGATTAT
TTCAACTACGACATTTTTTATGTAATGAACATCACTGATATTGATGATAA
GAATCCATTCATACCACATGAAGGAAAACAAGTTTTTTGGTACAGTTGTG
GCCCCACTGTTTATGATGCTTCCCATATGGGTCATGCAAGGCTATTTAGA
TCCACCTGGAACTTGGGTAGCTCTATTTCAAGATTACACAAACACTTCAA
CTTTACACCTCAACTGATATTAATCACAAGAAATCATTCCAATATGCGGC
GCTGGAAGCAACTTGAAGGAGAAAGTGAACTGAAACTTTACAACAGTCTT
ACCAGAGAAAAGATTTTGGTGCAAAGGTGACAGACTTCAAGATATTCAGT
AAACTGACACAATATTGGGAAAATGAATACCATGAAGATATGAAAAATCT
CAATGTAGAATTACTTGATGCTGCAAATGATCCTTTAGCCGATCTCCTCG
ATAAAAAGGAAAATGTGAAGAATGCGCAAGGAATTTTGGAGACTGCTATC
AAAGAATCTAAAGAAATTGAGAAATCCACTAATGCTTTCGTTGCAAAGAT
AGAAAAAACAACAGACCCTGATAAAAAGAATATGCTGAAAAAAATCATGA
TTATAAACAGAGCAAGGCGGAATCATTTAATGAAAGAATACAGAGATGGA
AACCCAGAAGCAAAAACTGTTCTTGATGACCTTCAAGAAGCTTTAGTGAT
CTTACATCACCTTCGATATTTTAAGAAGAGTTCTTTCAGATTATTTCAAC
TACGACATTTTTTATGTAATGAACATCACTGATATTGATGATAAGAATCC
ATTCATACCACATGAAGGAAAACAAGTTTTTTGGTACAGTTGTGGCCCCA
CTGTTTATGATGCTTCCCATATGGGTCATGCAAGGCTATTTAGATCCACC
TGGAACTTGGGTAGCTCTATTTCAAGATTACACAAACACTTCAACTTTAC
ACCTCAACTGATATTAATCACAAGAAATCATTCCAATATGCGGCGCTGGA
AGCAACTTGAAGGAGAAAGTGAACTGAAACTTTACAACAGTCTTACCAGA
GAAAAGATTTTGGTGCAAAGGTGACAGACTTCAAGATATTCAGTAAACTG
ACACAATATTGGGAAAATGAATACCATGAAGATATGAAAAATCTCAATGT
AGAATTACTTGATGCTGCAAATGATCCTTTAGCCGATCTCCTCGATAAAA
AGGAAAATGTGAAGAATGCGCAAGGAATTTTGGAGACTGCTATCAAAGAA
TCTAAAGAAATTGAGAAATCCACTAATGCTTTCGTTGCAAAGATAGAAAA
AACAACAGACCCTGATAAAAAGAATATGCTGAAAAAAATCATGATTATAA
ACAGAGCAAGGCGGAATCATTTAATGAAAGAATACAGAGATGGAAACCCA
GAAGCAAAAACTGTTCTTGATGACCTTCAAGAAGCTTTAGTGATCTTACA
TCACCTTCGATATTTTAAGAAGAGTTCTTTCAGATTATTTCAACTACGAC
ATTTTTTATGTAATGAACATCACTGATATTGATGATAAGAATCCATTCAT
ACCACATGAAGGAAAACAAGTTTTTTGGTACAGTTGTGGCCCCACTGTTT
ATGATGCTTCCCATATGGGTCATGCAAGGCTATTTAGATCCACCTGGAAC
TTGGGTAGCTCTATTTCAAGATTACACAAACACTTCAACTTTACACCTCA
ACTGATATTAATCACAAGAAATCATTCCAATATGCGGCGCTGGAAGCAAC
TTGAAGGAGAAAGTGAACTGAAACTTTACAACAGTCTTACCAGAGAAAAG
ATTTTGGTGCAAAGGTGACAGACTTCAAGATATTCAGTAAACTGACACAA
TATTGGGAAAATGAATACCATGAAGATATGAAAAATCTCAATGTAGAATT
ACTTGATGCTGCAAATGATCCTTTAGCCGATCTCCTCGATAAAAAGGAAA
ATGTGAAGAATGCGCAAGGAATTTTGGAGACTGCTATCAAAGAATCTAAA
GAAATTGAGAAATCCACTAATGCTTTCGTTGCAAAGATAGAAAAAACAAC
AGACCCTGATAAAAAGAATATGCTGAAAAAAATCATGATTATAAACAGAG
CAAGGCGGAATCATTTAATGAAAGAATACAGAGATGGAAACCCAGAAGCA
AAAACTGTTCTTGATGACCTTCAAGAAGCTTTAGTGATCTTACATCACCT
TCGATATTTTAAGAAGAGTTCTTTCAGATTATTTCAACTACGACATTTTT
TATGTAATGAACATCACTGATATTGATGATAAGAATCCATTCATACCACA
TGAAGGAAAACAAGTTTTTTGGTACAGTTGTGGCCCCACTGTTTATGATG
CTTCCCATATGGGTCATGCAAGGCTATTTAGATCCACCTGGAACTTGGGT
AGCTCTATTTCAAGATTACACAAACACTTCAACTTTACACCTCAACTGAT
ATTAATCACAAGAAATCATTCCAATATGCGGCGCTGGAAGCAACTTGAAG
GAGAAAGTGAACTGAAACTTTACAACAGTCTTACCAGAGAAAAGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040161XLOC_040161Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064054-exon-scaffold_407-1575043694:48398..48430TCONS_00064054-exon-scaffold_407-1575043694:48398..48430Clytia hemisphaericaexon
TCONS_00064054-exon-scaffold_407-1575043694:47938..47987TCONS_00064054-exon-scaffold_407-1575043694:47938..47987Clytia hemisphaericaexon
TCONS_00064054-exon-scaffold_407-1575043694:47432..47603TCONS_00064054-exon-scaffold_407-1575043694:47432..47603Clytia hemisphaericaexon
TCONS_00064054-exon-scaffold_407-1575043694:47123..47211TCONS_00064054-exon-scaffold_407-1575043694:47123..47211Clytia hemisphaericaexon
TCONS_00064054-exon-scaffold_407-1575043694:46705..46801TCONS_00064054-exon-scaffold_407-1575043694:46705..46801Clytia hemisphaericaexon
TCONS_00064054-exon-scaffold_407-1575043694:46146..46244TCONS_00064054-exon-scaffold_407-1575043694:46146..46244Clytia hemisphaericaexon
TCONS_00064054-exon-scaffold_407-1575043694:45762..45827TCONS_00064054-exon-scaffold_407-1575043694:45762..45827Clytia hemisphaericaexon
TCONS_00064054-exon-scaffold_407-1575043694:45541..45615TCONS_00064054-exon-scaffold_407-1575043694:45541..45615Clytia hemisphaericaexon
TCONS_00064054-exon-scaffold_407-1575043694:45176..45226TCONS_00064054-exon-scaffold_407-1575043694:45176..45226Clytia hemisphaericaexon
TCONS_00064054-exon-scaffold_407-1575043694:44777..44870TCONS_00064054-exon-scaffold_407-1575043694:44777..44870Clytia hemisphaericaexon
TCONS_00064054-exon-scaffold_407-1510915933:48398..48430TCONS_00064054-exon-scaffold_407-1510915933:48398..48430Clytia hemisphaericaexon
TCONS_00064054-exon-scaffold_407-1510915933:47938..47987TCONS_00064054-exon-scaffold_407-1510915933:47938..47987Clytia hemisphaericaexon
TCONS_00064054-exon-scaffold_407-1510915933:47432..47603TCONS_00064054-exon-scaffold_407-1510915933:47432..47603Clytia hemisphaericaexon
TCONS_00064054-exon-scaffold_407-1510915933:47123..47211TCONS_00064054-exon-scaffold_407-1510915933:47123..47211Clytia hemisphaericaexon
TCONS_00064054-exon-scaffold_407-1510915933:46705..46801TCONS_00064054-exon-scaffold_407-1510915933:46705..46801Clytia hemisphaericaexon
TCONS_00064054-exon-scaffold_407-1510915933:46146..46244TCONS_00064054-exon-scaffold_407-1510915933:46146..46244Clytia hemisphaericaexon
TCONS_00064054-exon-scaffold_407-1510915933:45762..45827TCONS_00064054-exon-scaffold_407-1510915933:45762..45827Clytia hemisphaericaexon
TCONS_00064054-exon-scaffold_407-1510915933:45541..45615TCONS_00064054-exon-scaffold_407-1510915933:45541..45615Clytia hemisphaericaexon
TCONS_00064054-exon-scaffold_407-1510915933:45176..45226TCONS_00064054-exon-scaffold_407-1510915933:45176..45226Clytia hemisphaericaexon
TCONS_00064054-exon-scaffold_407-1510915933:44777..44870TCONS_00064054-exon-scaffold_407-1510915933:44777..44870Clytia hemisphaericaexon
TCONS_00064054-exon-scaffold_407-1491911889:48398..48430TCONS_00064054-exon-scaffold_407-1491911889:48398..48430Clytia hemisphaericaexon
TCONS_00064054-exon-scaffold_407-1491911889:47938..47987TCONS_00064054-exon-scaffold_407-1491911889:47938..47987Clytia hemisphaericaexon
TCONS_00064054-exon-scaffold_407-1491911889:47432..47603TCONS_00064054-exon-scaffold_407-1491911889:47432..47603Clytia hemisphaericaexon
TCONS_00064054-exon-scaffold_407-1491911889:47123..47211TCONS_00064054-exon-scaffold_407-1491911889:47123..47211Clytia hemisphaericaexon
TCONS_00064054-exon-scaffold_407-1491911889:46705..46801TCONS_00064054-exon-scaffold_407-1491911889:46705..46801Clytia hemisphaericaexon
TCONS_00064054-exon-scaffold_407-1491911889:46146..46244TCONS_00064054-exon-scaffold_407-1491911889:46146..46244Clytia hemisphaericaexon
TCONS_00064054-exon-scaffold_407-1491911889:45762..45827TCONS_00064054-exon-scaffold_407-1491911889:45762..45827Clytia hemisphaericaexon
TCONS_00064054-exon-scaffold_407-1491911889:45541..45615TCONS_00064054-exon-scaffold_407-1491911889:45541..45615Clytia hemisphaericaexon
TCONS_00064054-exon-scaffold_407-1491911889:45176..45226TCONS_00064054-exon-scaffold_407-1491911889:45176..45226Clytia hemisphaericaexon
TCONS_00064054-exon-scaffold_407-1491911889:44777..44870TCONS_00064054-exon-scaffold_407-1491911889:44777..44870Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064054-proteinTCONS_00064054-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_407supercontigscaffold_407:44777..48430 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
39.545	37.9636	31.0924	27.5099	52.7648	43.9343	94.3533	94.1876	46.3378	57.1915	29.5841	25.9222	20.1346	13.8195	22.0067	25.9628	41.8598	32.1825	5.62502	15.3434	20.0598	22.5349	22.3964	28.2631	39.7577	49.5327	18.7834	12.6248	24.6185	18.0579
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR024909Cys-tRNA/MSH_ligase
IPR014729Rossmann-like_a/b/a_fold
IPR032678tRNA-synt_1_cat_dom
Blast
[Close]
BLAST of TCONS_00064054 vs. Swiss-Prot (Human)
Match: SYCC (Cysteine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=CARS PE=1 SV=3)

HSP 1 Score: 230.72 bits (587), Expect = 2.290e-69
Identity = 121/216 (56.02%), Postives = 150/216 (69.44%), Query Frame = 1 
Query:  193 RWKQLEG--ESELKLYNSLTREKNPFIPHEGKQVFWYSCGPTVYDASHMGHARSYITFDILRRVLSDYFNYDIFYVMNITDIDDKIINRARRNHLMKEYRDGNPEAKTVLDDLQEALVAFVAKIEKTTDPDKKNMLKKIMENVKNAQGILETAIKE---SKEIEKSTNEXXXXXXXXXXXXXXKKFGAKVTDFKIFSKLTQYWENEYHEDMKNLNV 825
            +W    G     L LYNSLTR K  FIP +GK+V WY CGPTVYDASHMGHARSYI+FDILRRVL DYF +D+FY MNITDIDDKII RAR+NHL ++YR+  PEA  +L+D+Q AL  F  K+ +TTDPDKK ML++I   V+ A   LE A++     +E+      LL+ A D L+D LD   G  VTD  IFSKL ++WE ++H DM+ LNV
Sbjct:   17 QWSPPAGTQPCRLHLYNSLTRNKEVFIPQDGKKVTWYCCGPTVYDASHMGHARSYISFDILRRVLKDYFKFDVFYCMNITDIDDKIIKRARQNHLFEQYREKRPEAAQLLEDVQAALKPFSVKLNETTDPDKKQMLERIQHAVQLATEPLEKAVQSRLTGEEVNSCVEVLLEEAKDLLSDWLDSTLGCDVTDNSIFSKLPKFWEGDFHRDMEALNV 232
The following BLAST results are available for this feature:
BLAST of TCONS_00064054 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SYCC2.290e-6956.02Cysteine--tRNA ligase, cytoplasmic OS=Homo sapiens... [more]
back to top