TCONS_00064053 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00064053
Unique Name	TCONS_00064053
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	778

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_407:44777..47981-

transcript sequence

>TCONS_00064053 ID=TCONS_00064053|Name=TCONS_00064053|organism=Clytia hemisphaerica|type=transcript|length=778bp
gaaatctttaaaaGCAACAAAATACCATATCACAAAATATTCATATCCAC
CTGGAACTTGGGTAGCTCTATTTCAAGATTACACAAACACTTCAACTTTA
CACCTCAACTGATATTAATCACAAGAAATCATTCCAATATGCGGCGCTGG
AAGCAACTTGAAGGAGAAAGTGAACTGAAACTTTACAACAGTCTTACCAG
AGAAAAGAATCCATTCATACCACATGAAGGAAAACAAGTTTTTTGGTACA
GTTGTGGCCCCACTGTTTATGATGCTTCCCATATGGGTCATGCAAGatcT
TACATCACCTTCGATATTTTAAGAAGAGTTCTTTCAGATTATTTCAACTA
CGACATTTTTTATGTAATGAACATCACTGATATTGATGATAAGATTATAA
ACAGAGCAAGGCGGAATCATTTAATGAAAGAATACAGAGATGGAAACCCA
GAAGCAAAAACTGTTCTTGATGACCTTCAAGAAGCTTTAGTGGCTTTCGT
TGCAAAGATAGAAAAAACAACAGACCCTGATAAAAAGAATatgctgaaaa
aaatcatgGAAAATGTGAAGAATGCGCAAGGAATTTTGGAGACTGCTATC
AAAGAATCTAAAGAAATTGAGAAATCCACTAATGAATTACTTGATGCTGC
AAATGATCCTTTAGCCGATCTCCTCgataaaaagTTTGGTGCAAAGGTGA
CAGACTTCAAGATATTCAGTAAACTGACACAATATTGGGAAAATGAATAC
CATGAAgatatgaaaaatctcaatgtAT

Run BLAST on NCBI

transcript from alignment at scaffold_407:44777..47981-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00064053 ID=TCONS_00064053|Name=TCONS_00064053|organism=Clytia hemisphaerica|type=transcript|length=3205bp|location=Sequence derived from alignment at scaffold_407:44777..47981- (Clytia hemisphaerica)
GAAATCTTTAAAAGCAACAAAATACCATATCACAAAATATTCATGTAAGT
ATTTTTGTGATTGTGTTACCATGCCTCGATCAGAATCATTGATCATCAAA
TTTGAATAACACTTGTGCATTATGATACTTCTTCGTCAAACTTTTAACGT
CATGGGTTTTAAGTAGTATGCTTCGAAAAATTTAGTTAGCTTTTATATGA
TAAATGGAAATTGTTTCAATAAAGAGCCAATCAACCTTAAAATATGATTA
GTAACAGCAACAAGAATGGCAGATGAAAGTAAAGATGAGAAAGAAAGTTA
TTTTTTTTGTCGTGAGGAATTTCTTTAGGATTCCTCATTCATACTGCTAC
TGTTATTTTACCTCTAAACCTATTTAAGGCTATTTAGATCCACCTGGAAC
TTGGGTAGCTCTATTTCAAGATTACACAAACACTTCAACTTTACACCTCA
ACTGATATTAATCACAAGAAATCATTCCAATATGCGGCGCTGGAAGCAAC
TTGAAGGAGAAAGTGAACTGAAACTTTACAACAGTCTTACCAGAGAAAAG
GTAAATTATAATGTTTGTTACCTTTTTCCCTTTTCTCTACTATTTTCTGG
AAGTTTCAAGCATCAAGGCATCAAATAGTATTTTTGTCTTGATCCTTTGT
CAAAATATTATACTACTTTTTTCCCAATTATAGTTTCTTTTGTTTTCAAA
TAATTGTTATAATCATTTTGATTCTCTAAATTTTGAAATGGTAATATTAT
TATCTTTCTATTTGTTATAGAATCCATTCATACCACATGAAGGAAAACAA
GTTTTTTGGTACAGTTGTGGCCCCACTGTTTATGATGCTTCCCATATGGG
TCATGCAAGGTTTGCAAATCCCCTTTGAAGTAAACATATTTTTCTGTATG
GAACCAAGTTGCTAATGTACAAAATTAGGAAGTTGTCAGAAAATGAGCAT
TGCTAAGCAAACCCAGCCCTGACCTGGAAATTGGAGTTACTTATAAAAAA
CATAATGTGTAAACGGAAATGAGATTTCATGGTTTATAAAACGTTCCAAC
TTATCTTTTGGATTTATAAATAAAGTTGCATTTTTTTCTATTTTCAACCT
TTGCTTTGACTTGAGAATCTTAATTTAGCTCAACTTACCTTCGATTATAT
TATGATAGATTATCAAATTTTTCATTTTAGATCTTACATCACCTTCGATA
TTTTAAGAAGAGTTCTTTCAGATTATTTCAACTACGACATTTTTTATGTA
ATGAACATCACTGATATTGATGATAAGGTACTTATTGTTTTTTTGCATTT
TCTCTTTCTGAATTACTCGTGGGTTTGAATATCTGAAAAAGTTAAAAATA
TTTTTTAAAACACAAAGCGTTCTAGTATTCTCCTAGTCAAGAGTCCCTAT
ATTGTCAGTTTTATTATTTCTTTGAAGTTACATGATCTTAATAATCTCAA
TTTAAATTTTAATTTCATTCAGAATAGCTTTTTTTCTCCATATCTGAACT
GAATATAAATTTTCAGAATAAAGAAAACACATCTATTTAGAAGATGTTTT
GCTCATATCTTTGAGCACTATCCAGTCTAAAAGAGAAAAAATAACAAATT
AGTCCTAAATAAATCAGATAAATTAAAAAGAAAAAAAAATCTTGAAAAAA
ATACACCCTCTTTCAAACACAAACAAATTACATTAGTTTGATGCTTGTTT
GACTAACAATTTTAATATTAATCATAATGTTTCTCAGATTATAAACAGAG
CAAGGCGGAATCATTTAATGAAAGAATACAGAGATGGAAACCCAGAAGCA
AAAACTGTTCTTGATGACCTTCAAGAAGCTTTAGTGGTTGGTGAATCTTT
GTGTCTTGTATTTAAAACCTCAACCAAGTTCAAAAAATATAATCCAAAAT
GTGTATTTAAAAAAATTCACTTTTTTCCGTACATAATTTCTAAAATAACC
AGCACCGAGATTGCCAAATCCCAATTTCTTTAGTTTGCTTCCCAATCTTT
ATACTCTCTTGTTTTAAGGCTGTTTTGTTTTATGTTTTGACTTCATTAGA
GAAAGACTGTATACTTTAAACGATATTAATCAAAGATTAGACTAATTTAA
ACTTCTCCTTAAAAGACACAAAATATACTGGTTGAATTTATTCTCTCGTT
TAAGGCTTTCGTTGCAAAGATAGAAAAAACAACAGACCCTGATAAAAAGA
ATATGCTGAAAAAAATCATGGTATATTTAAATATGAAATTTTATTCTGAT
AAGATTTCCTAATTTAAACAATTGGATTTATAAAGTTGTTTCTTTGGTGG
AGTTGATATTATCTTTAAATTAATTTGAAGTGGTTCAAACATGTACGCTT
ATATGTTTTTGGGTAGGAAAATGTGAAGAATGCGCAAGGAATTTTGGAGA
CTGCTATCAAAGAATCTAAAGAAATTGAGAAATCCACTAATGTAAGTTCG
TTAACAATCATATGTTTGATAAAGTTATTTGCTTTTGCAAATTCTTCATT
ATATCCTAAGTTTTTCCTTCAAATTCAGCACTCTCATGCTCTGCCTTATT
ATAGGACATCTCACAATCATAGTTTAAGACTTGATGGTCTTCCATTTTAT
TTGAATTCTTTTCAATAATTTCCCCTACCATTTTAGCATAATTTCTTTAC
TTTTTTTCCAAGAACGTTTTTTTAAATGCACCTAACGAAACTGCAAAAAT
TGAACTATAATGTTAGTTAATACTGATATTTATTTATTTTTCATATTTTT
TGTAGGAATTACTTGATGCTGCAAATGATCCTTTAGCCGATCTCCTCGAT
AAAAAGGTTAAAATCACTTTTTGACAGCCGGGTGATAAATAACCGTAAAT
GTATGAAAGTTTTGCGTTCAGAGGAGGTGCCTAGGGATATCCTGAGCATA
GTGCAGTCCAACTGAATAAATGTGTTTTCTGTTATGGCAAAATATCGGAT
GGTAGCTTTAAAGATAAAGCATTGTAGTTAATAAATATTTGAATTAATTT
CTGCCCTGCAAAGGTATAGAGCTCTTTATTCATAAAACTTTCTTTACTTT
TTGATTAGCAGCAAGAAAGAAATTAACTAACAAAATATCTTCATCTTTCT
CACTTAAACAGTTTGGTGCAAAGGTGACAGACTTCAAGATATTCAGTAAA
CTGACACAATATTGGGAAAATGAATACCATGAAGATATGAAAAATCTCAA
TGTAT

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_040161	XLOC_040161	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_407	supercontig	scaffold_407:44777..47981 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.740069	0.587336	2.11127	1.22732	0	0	0	0	1.33914	5.62147	4.16761	5.78343	1.82822	3.36793	1.31128	0.828004	3.31189	5.00171	0	0.93912	2.59692	2.16325	0	1.11033	0	0	1.96383	0	4.9252	3.01879

Blast

[Close]

BLAST of TCONS_00064053 vs. Swiss-Prot (Human)
Match: SYCC (Cysteine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=CARS PE=1 SV=3)

HSP 1 Score: 230.335 bits (586), Expect = 1.485e-69
Identity = 119/204 (58.33%), Postives = 147/204 (72.06%), Query Frame = 1

Query:  175 LKLYNSLTREKNPFIPHEGKQVFWYSCGPTVYDASHMGHARSYITFDILRRVLSDYFNYDIFYVMNITDIDDKIINRARRNHLMKEYRDGNPEAKTVLDDLQEALVAFVAKIEKTTDPDKKNMLKKIMENVKNAQGILETAIKE---SKEIEKSTNEXXXXXXXXXXXXXXKKFGAKVTDFKIFSKLTQYWENEYHEDMKNLNV 777
            L LYNSLTR K  FIP +GK+V WY CGPTVYDASHMGHARSYI+FDILRRVL DYF +D+FY MNITDIDDKII RAR+NHL ++YR+  PEA  +L+D+Q AL  F  K+ +TTDPDKK ML++I   V+ A   LE A++     +E+      LL+ A D L+D LD   G  VTD  IFSKL ++WE ++H DM+ LNV
Sbjct:   29 LHLYNSLTRNKEVFIPQDGKKVTWYCCGPTVYDASHMGHARSYISFDILRRVLKDYFKFDVFYCMNITDIDDKIIKRARQNHLFEQYREKRPEAAQLLEDVQAALKPFSVKLNETTDPDKKQMLERIQHAVQLATEPLEKAVQSRLTGEEVNSCVEVLLEEAKDLLSDWLDSTLGCDVTDNSIFSKLPKFWEGDFHRDMEALNV 232

The following BLAST results are available for this feature:

BLAST of TCONS_00064053 vs. Swiss-Prot (Human)

BLAST of TCONS_00064053 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
SYCC	1.485e-69	58.33	Cysteine--tRNA ligase, cytoplasmic OS=Homo sapiens...	[more]

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TCONS_00064053 (transcript) - C. hemisphaerica