XLOC_001306 (gene) - C. hemisphaerica

Overview
NameXLOC_001306
Unique NameXLOC_001306
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000020:233897..238233+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_001306 ID=XLOC_001306|Name=XLOC_001306|organism=Clytia hemisphaerica|type=gene|length=4337bp|location=Sequence derived from alignment at sc0000020:233897..238233+ (Clytia hemisphaerica)
GTTGAAATGAAAGAGACTTCGACATATGGTAAAGTATTAGAGAATCCTTT
CGAAAATGACGAAAACAGTGGACCTGAAATCAATCCAAACTCTTTGACAA
TTGTCCAAATGTTGTCCAATGGGAAATCGTTAGATATATCTAAAGGTGCA
CTGTTGAAAAATGGAGAAATGAAGACTGTAGTGATCAAGACCTTGAAAGT
AAGCAgcaaaacctttttaaaaaacaaaaccgaTTATTCGGCTTCAGAGT
TAGTTCAGCGTTGGAAGAAAATTTGTCGCAGGGGCTGGAATCAGCaccct
ctcaccaacttttcctcgttctcctacgcagctacTATTTTAGCGAACAT
GCGTGCTCTCtaacatgattaattaacaggcGAGTTTGTTAGTCTATTAT
AATCTAAGACCTTATGTACAAGTTTCGTTTTTTACCTATTGACCTCAGAT
ATGTCTCAATTTCTTTCATAAAATCATATTTTGTCCTCAGGAAACAGCCA
CAGAATCTGACAGGATAGATTTTCTTCAAGAAGCCTCATTGGTTGGGAAA
ATGAACCATACAAATATCATCAAATATGAAGGCATTATTCTCAAATCACA
ACCACACACCATCGCATTGGAATATATGTTAAATGGGACATTGAACCTAT
ACTTGAAGGTGAGGAACCTCAACGAATTCTTGACTGTCCAATTATGATTG
TGCTATATAAAGGAACTTACAATTTTTAAGTGTTCATTAGTAAAGTAAAA
AGTGCTTCCAAGTGGCTCTTGGTACGACATTGGCAAAGGGCTTGAAATGT
TTATTAAAAGATCTTCCTCGCTTCACAGAAACATGACATGAAGTTGACCA
ATTTACAACTGTTGGGAATGGCCAGAGGAGTGGCTTCTGGCATGAAATAT
CTCAACGAACTTGGATTCATTCACAGGGTAAAGTATTTGTAATGGCCTGT
TGTATgttcaaacaatttttacatGAATTCAAGACCATAACTCATGACCA
TTTAAATTAAAGTGGTGTAAAAGAAGATTTTCTCTCATGTCAAACTGTTC
AATAACTTTATTTAGTGGCAGTCAAAATTTATGCAAGAATACACGAGGGT
GTGGTCGAGTGGTAGCACACTCACTTCATGCCTAGCCTATAAGGATTGCG
AGCTCGAGCCATGTCAGCCACGTAGCAAGATCATGGTTATCAATCAAAGT
GACGGTCCGGGAAAGGGAACCCTTAGGATAGATGTGAGAAACcgttaaaa
gataaaaacacTGTCTCCTATTTAATCTCCTATTTGAAGCAATTTTAGTA
TAGCTCTTGAAATATCTATCAATAGGATATAGCAGCGAGAAATGTTGTTT
TGGCTGACAATGGagaatgtaaaatttcaaattttggcaTGTGCAGAGAA
CTTGATGGAAAAGGTTGTTTCATGGCGAAGGTAAGATCTTCAAAATTCTG
CATGATTTGGTTTAGCACGAATTAACAGGTAAGTCTGCGATCGCAGTTCT
CCTTCGATAGCTTTCTAGCCAAAGGAAGGTGAGAGCGCCATTTTTTCTCC
ATGAGTTGCTCCACTTaaccttgatccttctcttaaatgaacatcaagca
gagagCCAAGTCTCATTTTGTATAAAGTACGAAATCTTTGGTAAACCTGG
CCAAGGATTgaaccgtagctggatgctctatcTTTCCGCTATGGGCTGTA
TAAACTTGCGTATCTTAAAGAAGTTTAAATGATTGATACGTCTTAATACA
ATTCAGTTGATCAATCAGTCAAGATGATAAAAATTATAGAGAATGTTTTA
ACAGGATGGTAAAATTGCGATCATATGGGCAGCACCAGAATCAGCACATC
AGAAAATATTCACCACAGCTTCAGATGTGTGGTCTTATGGTATTTTACTT
TGGGAAATCATGTCTTATGGTGAACGACCTTACTGGAACATGGAATCTCC
TGCTGACGTATGTAGTTCATATTTTTGTCTCTACTCATGCTTTTGCATTG
TACCTGAGAGTGTAAAGGCCTGTGTAGAAAAGATGCCATTTCTAAAGCTC
AAGTTTCTCTGAAACGAAAGCGAATACAAATATTTTGCTAAAAAGTTAAC
TAAAAAATTAGTCTCTTTTATCTCTACTATGGTTTCAAATCTAAATATTG
TACGACAAAAACAGTATTTTCTTCCAGGTTATATGGTTATGTAAGGATAG
ATGaaaatctcgtacccagagcaaTTTGCACTACTTTTTACTAATGGACG
TTTCATGAGCACTAGAATCATGACAAAGCGAACTAAGGAACTTGCTTCGA
GTTTGAATAAAAGATTCATTGGTATTGTGTTTTGTTTTAGGTTTTGGAAG
CAATAGATCAAGGTTATCGATTACCTCCACTAAAGGTTTGATACTAAACA
ATACTTCTCtttggcatgtcttaaaatcaCCATAACCGTGAGATATTTAA
ATCATCTACTTTTGCTTTATAGTATTTTATCAATGAATGGActactcggg
taagttatggcatgtctcaaaaactgaatatcaccataatttttagatcg
cattagccgacagaaaacgatcaaacaaatgactgaacacgAAGGGTACT
acgatgtagtttctaacctgatgtgtaacctaattgttttttcgctggtT
TTCGCGAAATTcctcaaaaactgattatgacgtcataatcgatgacgtca
ttaaaactaaaactttCACCAAACATGTATCCTACTAAAGTCAatcattt
gaaaaattctttttttcgaaattttgataaCGCCAGCAAATAATAGGATT
TTTTGTCTtttactaatttctgctgacgtcatcaaaatttttaaatttcc
tttttcaaatGATGATTGACTATGGTAAGAtacatttttggtaaaaattt
gaagacaattggataaaccattcttgagaaattcaatttttagttgtttt
tgcggtttttcgcaaaaatctggcaaaaaacatcaggttagaaacttcat
GATAAGGTCTTcgtgttcagtcatttgtttggtcattttctgtcggctaa
tgcgatctaaaaattatggtaatattcagtttttgagacatgccataact
tacccgagtagTCCATTCATTGATAAAATACTATAAAGCAAAAGTAGATG
ATTTAAACATCTCACAGTTTTAACCTCGCATCTGTATGAAATAGTAATTT
TGATACAGttttattgatttgtttttcaCCTAAATTGTGAAACTGAACTC
TCCAATATCTTTATATTCAAAGAATTGTCCAAGAGTCGCTTATGACATGA
TGTTAGAGTGTTGGGAGATAGAGCATACAAAAAGACCAACAATTAATGAA
ATCCTTAATCGTATTGACAAATGGATAGATAACCCTGAAGAACTTTTAGA
TGAAGCAACACCAGATGGCTATTCATCCTTGTAAGTTTTCTGATGAATAT
TTGTACAAGGGATGGCCGTTGAGCAGTTCTTTTTAAGATCTcatgaaata
gctttaaaaaataattcttaatGCGCCATTTCCATGTAGAAACCATGTAC
TGTATCTAAACCATTTACTTAGATCGGGTAACTtgtatcagtggaggcta
acatgaaGAAAGCAATACAGAGCTGTTAATGAAGGCCAAACACtaccttt
ccaaaagaaaagtttaacaactgaacccaaaactagcaaatcaatccaaa
gaaaaaatatatacaacaaAATCAATAGTAAAAATAATCGATGGAAATAG
TTGAAAACAAAATGCTCGAATACTACCACTATCCAAGCCTAGTGTAAAAA
CTGCCACTTAGTGCACATCCATCGACCCAATGCCACACACCTAAATAacc
atgcatagccctcaaatgaatgacctgtctgatccttgaaatacaaagtt
aaatcaaaacaaaaatggtagagtagagctgcgagcgaagctgtgtagtt
catttgttttgaaattttgctgctttgattggtcagtcatttgagggcaa
tgcatgttagcctccactgatgcaagttacccaatctcaagGTAAGTAGT
TTCTATTCGATATCAAAAAGAATAAACACTCAAAATgaactttaattttt
caataattcaagaaaaattaatACTACGGCTCTAGTAATTCAATCTTTTG
GTCAACAAACAACTATCTTCCATCCTTTTAGCTTGAACCCAGATGAGAAA
ATTATAGTATGAAGTAAAAGGTAGGAAAAtctattctttttttgttttga
acaggTACAGCAACCACAGTAACAAGAATGGAGCTGATTATGCAGAAATT
TCGGATTATGCTGATCTTAAATCAGTCAATGATTGGC
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00002428TCONS_00002428Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00002428-proteinTCONS_00002428-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000020supercontigsc0000020:233897..238233 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.09	0	0.1	0.05	0.42	0.47	1.2	0.69	0.78	0.65	0.67	0.5	0.88	0.74	1.86	2.49	1.86	2.22	1.74	1.78	4.29	2.95	0.92	1.43	0.71	0.59	9.61	4.48	4.23	2.96