TCONS_00002428 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002428
Unique NameTCONS_00002428
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1009

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002428 ID=TCONS_00002428|Name=TCONS_00002428|organism=Clytia hemisphaerica|type=transcript|length=1009bp
GTTGAAATGAAAGAGACTTCGACATATGGTAAAGTATTAGAGAATCCTTT
CGAAAATGACGAAAACAGTGGACCTGAAATCAATCCAAACTCTTTGACAA
TTGTCCAAATGTTGTCCAATGGGAAATCGTTAGATATATCTAAAGGTGCA
CTGTTGAAAAATGGAGAAATGAAGACTGTAGTGATCAAGACCTTGAAAGA
AACAGCCACAGAATCTGACAGGATAGATTTTCTTCAAGAAGCCTCATTGG
TTGGGAAAATGAACCATACAAATATCATCAAATATGAAGGCATTATTCTC
AAATCACAACCACACACCATCGCATTGGAATATATGTTAAATGGGACATT
GAACCTATACTTGAAGAAACATGACATGAAGTTGACCAATTTACAACTGT
TGGGAATGGCCAGAGGAGTGGCTTCTGGCATGAAATATCTCAACGAACTT
GGATTCATTCACAGGGATATAGCAGCGAGAAATGTTGTTTTGGCTGACAA
TGGagaatgtaaaatttcaaattttggcaTGTGCAGAGAACTTGATGGAA
AAGGTTGTTTCATGGCGAAGGATGGTAAAATTGCGATCATATGGGCAGCA
CCAGAATCAGCACATCAGAAAATATTCACCACAGCTTCAGATGTGTGGTC
TTATGGTATTTTACTTTGGGAAATCATGTCTTATGGTGAACGACCTTACT
GGAACATGGAATCTCCTGCTGACGTTTTGGAAGCAATAGATCAAGGTTAT
CGATTACCTCCACTAAAGAATTGTCCAAGAGTCGCTTATGACATGATGTT
AGAGTGTTGGGAGATAGAGCATACAAAAAGACCAACAATTAATGAAATCC
TTAATCGTATTGACAAATGGATAGATAACCCTGAAGAACTTTTAGATGAA
GCAACACCAGATGGCTATTCATCCTTgTACAGCAACCACAGTAACAAGAA
TGGAGCTGATTATGCAGAAATTTCGGATTATGCTGATCTTAAATCAGTCA
ATGATTGGC
Run BLAST on NCBI

protein sequence of TCONS_00002428-protein

>TCONS_00002428-protein ID=TCONS_00002428-protein|Name=TCONS_00002428-protein|organism=Clytia hemisphaerica|type=polypeptide|length=336bp
VEMKETSTYGKVLENPFENDENSGPEINPNSLTIVQMLSNGKSLDISKGA
LLKNGEMKTVVIKTLKETATESDRIDFLQEASLVGKMNHTNIIKYEGIIL
KSQPHTIALEYMLNGTLNLYLKKHDMKLTNLQLLGMARGVASGMKYLNEL
GFIHRDIAARNVVLADNGECKISNFGMCRELDGKGCFMAKDGKIAIIWAA
PESAHQKIFTTASDVWSYGILLWEIMSYGERPYWNMESPADVLEAIDQGY
RLPPLKNCPRVAYDMMLECWEIEHTKRPTINEILNRIDKWIDNPEELLDE
ATPDGYSSLYSNHSNKNGADYAEISDYADLKSVNDW
Run BLAST on NCBI

transcript from alignment at sc0000020:233897..238233+

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002428 ID=TCONS_00002428|Name=TCONS_00002428|organism=Clytia hemisphaerica|type=transcript|length=4337bp|location=Sequence derived from alignment at sc0000020:233897..238233+ (Clytia hemisphaerica)
GTTGAAATGAAAGAGACTTCGACATATGGTAAAGTATTAGAGAATCCTTT
CGAAAATGACGAAAACAGTGGACCTGAAATCAATCCAAACTCTTTGACAA
TTGTCCAAATGTTGTCCAATGGGAAATCGTTAGATATATCTAAAGGTGCA
CTGTTGAAAAATGGAGAAATGAAGACTGTAGTGATCAAGACCTTGAAAGT
AAGCAgcaaaacctttttaaaaaacaaaaccgaTTATTCGGCTTCAGAGT
TAGTTCAGCGTTGGAAGAAAATTTGTCGCAGGGGCTGGAATCAGCaccct
ctcaccaacttttcctcgttctcctacgcagctacTATTTTAGCGAACAT
GCGTGCTCTCtaacatgattaattaacaggcGAGTTTGTTAGTCTATTAT
AATCTAAGACCTTATGTACAAGTTTCGTTTTTTACCTATTGACCTCAGAT
ATGTCTCAATTTCTTTCATAAAATCATATTTTGTCCTCAGGAAACAGCCA
CAGAATCTGACAGGATAGATTTTCTTCAAGAAGCCTCATTGGTTGGGAAA
ATGAACCATACAAATATCATCAAATATGAAGGCATTATTCTCAAATCACA
ACCACACACCATCGCATTGGAATATATGTTAAATGGGACATTGAACCTAT
ACTTGAAGGTGAGGAACCTCAACGAATTCTTGACTGTCCAATTATGATTG
TGCTATATAAAGGAACTTACAATTTTTAAGTGTTCATTAGTAAAGTAAAA
AGTGCTTCCAAGTGGCTCTTGGTACGACATTGGCAAAGGGCTTGAAATGT
TTATTAAAAGATCTTCCTCGCTTCACAGAAACATGACATGAAGTTGACCA
ATTTACAACTGTTGGGAATGGCCAGAGGAGTGGCTTCTGGCATGAAATAT
CTCAACGAACTTGGATTCATTCACAGGGTAAAGTATTTGTAATGGCCTGT
TGTATgttcaaacaatttttacatGAATTCAAGACCATAACTCATGACCA
TTTAAATTAAAGTGGTGTAAAAGAAGATTTTCTCTCATGTCAAACTGTTC
AATAACTTTATTTAGTGGCAGTCAAAATTTATGCAAGAATACACGAGGGT
GTGGTCGAGTGGTAGCACACTCACTTCATGCCTAGCCTATAAGGATTGCG
AGCTCGAGCCATGTCAGCCACGTAGCAAGATCATGGTTATCAATCAAAGT
GACGGTCCGGGAAAGGGAACCCTTAGGATAGATGTGAGAAACcgttaaaa
gataaaaacacTGTCTCCTATTTAATCTCCTATTTGAAGCAATTTTAGTA
TAGCTCTTGAAATATCTATCAATAGGATATAGCAGCGAGAAATGTTGTTT
TGGCTGACAATGGagaatgtaaaatttcaaattttggcaTGTGCAGAGAA
CTTGATGGAAAAGGTTGTTTCATGGCGAAGGTAAGATCTTCAAAATTCTG
CATGATTTGGTTTAGCACGAATTAACAGGTAAGTCTGCGATCGCAGTTCT
CCTTCGATAGCTTTCTAGCCAAAGGAAGGTGAGAGCGCCATTTTTTCTCC
ATGAGTTGCTCCACTTaaccttgatccttctcttaaatgaacatcaagca
gagagCCAAGTCTCATTTTGTATAAAGTACGAAATCTTTGGTAAACCTGG
CCAAGGATTgaaccgtagctggatgctctatcTTTCCGCTATGGGCTGTA
TAAACTTGCGTATCTTAAAGAAGTTTAAATGATTGATACGTCTTAATACA
ATTCAGTTGATCAATCAGTCAAGATGATAAAAATTATAGAGAATGTTTTA
ACAGGATGGTAAAATTGCGATCATATGGGCAGCACCAGAATCAGCACATC
AGAAAATATTCACCACAGCTTCAGATGTGTGGTCTTATGGTATTTTACTT
TGGGAAATCATGTCTTATGGTGAACGACCTTACTGGAACATGGAATCTCC
TGCTGACGTATGTAGTTCATATTTTTGTCTCTACTCATGCTTTTGCATTG
TACCTGAGAGTGTAAAGGCCTGTGTAGAAAAGATGCCATTTCTAAAGCTC
AAGTTTCTCTGAAACGAAAGCGAATACAAATATTTTGCTAAAAAGTTAAC
TAAAAAATTAGTCTCTTTTATCTCTACTATGGTTTCAAATCTAAATATTG
TACGACAAAAACAGTATTTTCTTCCAGGTTATATGGTTATGTAAGGATAG
ATGaaaatctcgtacccagagcaaTTTGCACTACTTTTTACTAATGGACG
TTTCATGAGCACTAGAATCATGACAAAGCGAACTAAGGAACTTGCTTCGA
GTTTGAATAAAAGATTCATTGGTATTGTGTTTTGTTTTAGGTTTTGGAAG
CAATAGATCAAGGTTATCGATTACCTCCACTAAAGGTTTGATACTAAACA
ATACTTCTCtttggcatgtcttaaaatcaCCATAACCGTGAGATATTTAA
ATCATCTACTTTTGCTTTATAGTATTTTATCAATGAATGGActactcggg
taagttatggcatgtctcaaaaactgaatatcaccataatttttagatcg
cattagccgacagaaaacgatcaaacaaatgactgaacacgAAGGGTACT
acgatgtagtttctaacctgatgtgtaacctaattgttttttcgctggtT
TTCGCGAAATTcctcaaaaactgattatgacgtcataatcgatgacgtca
ttaaaactaaaactttCACCAAACATGTATCCTACTAAAGTCAatcattt
gaaaaattctttttttcgaaattttgataaCGCCAGCAAATAATAGGATT
TTTTGTCTtttactaatttctgctgacgtcatcaaaatttttaaatttcc
tttttcaaatGATGATTGACTATGGTAAGAtacatttttggtaaaaattt
gaagacaattggataaaccattcttgagaaattcaatttttagttgtttt
tgcggtttttcgcaaaaatctggcaaaaaacatcaggttagaaacttcat
GATAAGGTCTTcgtgttcagtcatttgtttggtcattttctgtcggctaa
tgcgatctaaaaattatggtaatattcagtttttgagacatgccataact
tacccgagtagTCCATTCATTGATAAAATACTATAAAGCAAAAGTAGATG
ATTTAAACATCTCACAGTTTTAACCTCGCATCTGTATGAAATAGTAATTT
TGATACAGttttattgatttgtttttcaCCTAAATTGTGAAACTGAACTC
TCCAATATCTTTATATTCAAAGAATTGTCCAAGAGTCGCTTATGACATGA
TGTTAGAGTGTTGGGAGATAGAGCATACAAAAAGACCAACAATTAATGAA
ATCCTTAATCGTATTGACAAATGGATAGATAACCCTGAAGAACTTTTAGA
TGAAGCAACACCAGATGGCTATTCATCCTTGTAAGTTTTCTGATGAATAT
TTGTACAAGGGATGGCCGTTGAGCAGTTCTTTTTAAGATCTcatgaaata
gctttaaaaaataattcttaatGCGCCATTTCCATGTAGAAACCATGTAC
TGTATCTAAACCATTTACTTAGATCGGGTAACTtgtatcagtggaggcta
acatgaaGAAAGCAATACAGAGCTGTTAATGAAGGCCAAACACtaccttt
ccaaaagaaaagtttaacaactgaacccaaaactagcaaatcaatccaaa
gaaaaaatatatacaacaaAATCAATAGTAAAAATAATCGATGGAAATAG
TTGAAAACAAAATGCTCGAATACTACCACTATCCAAGCCTAGTGTAAAAA
CTGCCACTTAGTGCACATCCATCGACCCAATGCCACACACCTAAATAacc
atgcatagccctcaaatgaatgacctgtctgatccttgaaatacaaagtt
aaatcaaaacaaaaatggtagagtagagctgcgagcgaagctgtgtagtt
catttgttttgaaattttgctgctttgattggtcagtcatttgagggcaa
tgcatgttagcctccactgatgcaagttacccaatctcaagGTAAGTAGT
TTCTATTCGATATCAAAAAGAATAAACACTCAAAATgaactttaattttt
caataattcaagaaaaattaatACTACGGCTCTAGTAATTCAATCTTTTG
GTCAACAAACAACTATCTTCCATCCTTTTAGCTTGAACCCAGATGAGAAA
ATTATAGTATGAAGTAAAAGGTAGGAAAAtctattctttttttgttttga
acaggTACAGCAACCACAGTAACAAGAATGGAGCTGATTATGCAGAAATT
TCGGATTATGCTGATCTTAAATCAGTCAATGATTGGC

Coding sequence (CDS) from alignment at sc0000020:233897..238233+

>TCONS_00002428 ID=TCONS_00002428|Name=TCONS_00002428|organism=Clytia hemisphaerica|type=CDS|length=8064bp|location=Sequence derived from alignment at sc0000020:233897..238233+ (Clytia hemisphaerica)
GTTGAAATGAAAGAGACTTCGACATATGGTAAAGTATTAGAGAATCCTTT
CGAAAATGACGAAAACAGTGGACCTGAAATCAATCCAAACTCTTTGACAA
TTGTCCAAATGTTGTCCAATGGGAAATCGTTAGATATATCTAAAGGTGCA
CTGTTGAAAAATGGAGAAATGAAGACTGTAGTGATCAAGACCTTGAAAGA
AACAGCCACAGAATCTGACAGGATAGATTTTCTTCAAGAAGCCTCATTGG
TTGGGAAAATGAACCATACAAATATCATCAAATATGAAGGCATTATTCTC
AAATCACAACCACACACCATCGCATTGGAATATATGTTAAATGGGACATT
GAACCTATACTTGAAGAAACATGACATGAAGTTGACCAATTTACAACTGT
TGGGAATGGCCAGAGGAGTGGCTTCTGGCATGAAATATCTCAACGAACTT
GGATTCATTCACAGGGATATAGCAGCGAGAAATGTTGTTTTGGCTGACAA
TGGagaatgtaaaatttcaaattttggcaTGTGCAGAGAACTTGATGGAA
AAGGTTGTTTCATGGCGAAGGATGGTAAAATTGCGATCATATGGGCAGCA
CCAGAATCAGCACATCAGAAAATATTCACCACAGCTTCAGATGTGTGGTC
TTATGGTATTTTACTTTGGGAAATCATGTCTTATGGTGAACGACCTTACT
GGAACATGGAATCTCCTGCTGACGTTTTGGAAGCAATAGATCAAGGTTAT
CGATTACCTCCACTAAAGAATTGTCCAAGAGTCGCTTATGACATGATGTT
AGAGTGTTGGGAGATAGAGCATACAAAAAGACCAACAATTAATGAAATCC
TTAATCGTATTGACAAATGGATAGATAACCCTGAAGAACTTTTAGATGAA
GCAACACCAGATGGCTATTCATCCTTgTACAGCAACCACAGTAACAAGAA
TGGAGCTGATTATGCAGAAATTTCGGATTATGCTGATCTTAAATCAGTCA
ATGATTGGGTTGAAATGAAAGAGACTTCGACATATGGTAAAGTATTAGAG
AATCCTTTCGAAAATGACGAAAACAGTGGACCTGAAATCAATCCAAACTC
TTTGACAATTGTCCAAATGTTGTCCAATGGGAAATCGTTAGATATATCTA
AAGGTGCACTGTTGAAAAATGGAGAAATGAAGACTGTAGTGATCAAGACC
TTGAAAGAAACAGCCACAGAATCTGACAGGATAGATTTTCTTCAAGAAGC
CTCATTGGTTGGGAAAATGAACCATACAAATATCATCAAATATGAAGGCA
TTATTCTCAAATCACAACCACACACCATCGCATTGGAATATATGTTAAAT
GGGACATTGAACCTATACTTGAAGAAACATGACATGAAGTTGACCAATTT
ACAACTGTTGGGAATGGCCAGAGGAGTGGCTTCTGGCATGAAATATCTCA
ACGAACTTGGATTCATTCACAGGGATATAGCAGCGAGAAATGTTGTTTTG
GCTGACAATGGagaatgtaaaatttcaaattttggcaTGTGCAGAGAACT
TGATGGAAAAGGTTGTTTCATGGCGAAGGATGGTAAAATTGCGATCATAT
GGGCAGCACCAGAATCAGCACATCAGAAAATATTCACCACAGCTTCAGAT
GTGTGGTCTTATGGTATTTTACTTTGGGAAATCATGTCTTATGGTGAACG
ACCTTACTGGAACATGGAATCTCCTGCTGACGTTTTGGAAGCAATAGATC
AAGGTTATCGATTACCTCCACTAAAGAATTGTCCAAGAGTCGCTTATGAC
ATGATGTTAGAGTGTTGGGAGATAGAGCATACAAAAAGACCAACAATTAA
TGAAATCCTTAATCGTATTGACAAATGGATAGATAACCCTGAAGAACTTT
TAGATGAAGCAACACCAGATGGCTATTCATCCTTgTACAGCAACCACAGT
AACAAGAATGGAGCTGATTATGCAGAAATTTCGGATTATGCTGATCTTAA
ATCAGTCAATGATTGGGTTGAAATGAAAGAGACTTCGACATATGGTAAAG
TATTAGAGAATCCTTTCGAAAATGACGAAAACAGTGGACCTGAAATCAAT
CCAAACTCTTTGACAATTGTCCAAATGTTGTCCAATGGGAAATCGTTAGA
TATATCTAAAGGTGCACTGTTGAAAAATGGAGAAATGAAGACTGTAGTGA
TCAAGACCTTGAAAGAAACAGCCACAGAATCTGACAGGATAGATTTTCTT
CAAGAAGCCTCATTGGTTGGGAAAATGAACCATACAAATATCATCAAATA
TGAAGGCATTATTCTCAAATCACAACCACACACCATCGCATTGGAATATA
TGTTAAATGGGACATTGAACCTATACTTGAAGAAACATGACATGAAGTTG
ACCAATTTACAACTGTTGGGAATGGCCAGAGGAGTGGCTTCTGGCATGAA
ATATCTCAACGAACTTGGATTCATTCACAGGGATATAGCAGCGAGAAATG
TTGTTTTGGCTGACAATGGagaatgtaaaatttcaaattttggcaTGTGC
AGAGAACTTGATGGAAAAGGTTGTTTCATGGCGAAGGATGGTAAAATTGC
GATCATATGGGCAGCACCAGAATCAGCACATCAGAAAATATTCACCACAG
CTTCAGATGTGTGGTCTTATGGTATTTTACTTTGGGAAATCATGTCTTAT
GGTGAACGACCTTACTGGAACATGGAATCTCCTGCTGACGTTTTGGAAGC
AATAGATCAAGGTTATCGATTACCTCCACTAAAGAATTGTCCAAGAGTCG
CTTATGACATGATGTTAGAGTGTTGGGAGATAGAGCATACAAAAAGACCA
ACAATTAATGAAATCCTTAATCGTATTGACAAATGGATAGATAACCCTGA
AGAACTTTTAGATGAAGCAACACCAGATGGCTATTCATCCTTgTACAGCA
ACCACAGTAACAAGAATGGAGCTGATTATGCAGAAATTTCGGATTATGCT
GATCTTAAATCAGTCAATGATTGGGTTGAAATGAAAGAGACTTCGACATA
TGGTAAAGTATTAGAGAATCCTTTCGAAAATGACGAAAACAGTGGACCTG
AAATCAATCCAAACTCTTTGACAATTGTCCAAATGTTGTCCAATGGGAAA
TCGTTAGATATATCTAAAGGTGCACTGTTGAAAAATGGAGAAATGAAGAC
TGTAGTGATCAAGACCTTGAAAGAAACAGCCACAGAATCTGACAGGATAG
ATTTTCTTCAAGAAGCCTCATTGGTTGGGAAAATGAACCATACAAATATC
ATCAAATATGAAGGCATTATTCTCAAATCACAACCACACACCATCGCATT
GGAATATATGTTAAATGGGACATTGAACCTATACTTGAAGAAACATGACA
TGAAGTTGACCAATTTACAACTGTTGGGAATGGCCAGAGGAGTGGCTTCT
GGCATGAAATATCTCAACGAACTTGGATTCATTCACAGGGATATAGCAGC
GAGAAATGTTGTTTTGGCTGACAATGGagaatgtaaaatttcaaattttg
gcaTGTGCAGAGAACTTGATGGAAAAGGTTGTTTCATGGCGAAGGATGGT
AAAATTGCGATCATATGGGCAGCACCAGAATCAGCACATCAGAAAATATT
CACCACAGCTTCAGATGTGTGGTCTTATGGTATTTTACTTTGGGAAATCA
TGTCTTATGGTGAACGACCTTACTGGAACATGGAATCTCCTGCTGACGTT
TTGGAAGCAATAGATCAAGGTTATCGATTACCTCCACTAAAGAATTGTCC
AAGAGTCGCTTATGACATGATGTTAGAGTGTTGGGAGATAGAGCATACAA
AAAGACCAACAATTAATGAAATCCTTAATCGTATTGACAAATGGATAGAT
AACCCTGAAGAACTTTTAGATGAAGCAACACCAGATGGCTATTCATCCTT
gTACAGCAACCACAGTAACAAGAATGGAGCTGATTATGCAGAAATTTCGG
ATTATGCTGATCTTAAATCAGTCAATGATTGGGTTGAAATGAAAGAGACT
TCGACATATGGTAAAGTATTAGAGAATCCTTTCGAAAATGACGAAAACAG
TGGACCTGAAATCAATCCAAACTCTTTGACAATTGTCCAAATGTTGTCCA
ATGGGAAATCGTTAGATATATCTAAAGGTGCACTGTTGAAAAATGGAGAA
ATGAAGACTGTAGTGATCAAGACCTTGAAAGAAACAGCCACAGAATCTGA
CAGGATAGATTTTCTTCAAGAAGCCTCATTGGTTGGGAAAATGAACCATA
CAAATATCATCAAATATGAAGGCATTATTCTCAAATCACAACCACACACC
ATCGCATTGGAATATATGTTAAATGGGACATTGAACCTATACTTGAAGAA
ACATGACATGAAGTTGACCAATTTACAACTGTTGGGAATGGCCAGAGGAG
TGGCTTCTGGCATGAAATATCTCAACGAACTTGGATTCATTCACAGGGAT
ATAGCAGCGAGAAATGTTGTTTTGGCTGACAATGGagaatgtaaaatttc
aaattttggcaTGTGCAGAGAACTTGATGGAAAAGGTTGTTTCATGGCGA
AGGATGGTAAAATTGCGATCATATGGGCAGCACCAGAATCAGCACATCAG
AAAATATTCACCACAGCTTCAGATGTGTGGTCTTATGGTATTTTACTTTG
GGAAATCATGTCTTATGGTGAACGACCTTACTGGAACATGGAATCTCCTG
CTGACGTTTTGGAAGCAATAGATCAAGGTTATCGATTACCTCCACTAAAG
AATTGTCCAAGAGTCGCTTATGACATGATGTTAGAGTGTTGGGAGATAGA
GCATACAAAAAGACCAACAATTAATGAAATCCTTAATCGTATTGACAAAT
GGATAGATAACCCTGAAGAACTTTTAGATGAAGCAACACCAGATGGCTAT
TCATCCTTgTACAGCAACCACAGTAACAAGAATGGAGCTGATTATGCAGA
AATTTCGGATTATGCTGATCTTAAATCAGTCAATGATTGGGTTGAAATGA
AAGAGACTTCGACATATGGTAAAGTATTAGAGAATCCTTTCGAAAATGAC
GAAAACAGTGGACCTGAAATCAATCCAAACTCTTTGACAATTGTCCAAAT
GTTGTCCAATGGGAAATCGTTAGATATATCTAAAGGTGCACTGTTGAAAA
ATGGAGAAATGAAGACTGTAGTGATCAAGACCTTGAAAGAAACAGCCACA
GAATCTGACAGGATAGATTTTCTTCAAGAAGCCTCATTGGTTGGGAAAAT
GAACCATACAAATATCATCAAATATGAAGGCATTATTCTCAAATCACAAC
CACACACCATCGCATTGGAATATATGTTAAATGGGACATTGAACCTATAC
TTGAAGAAACATGACATGAAGTTGACCAATTTACAACTGTTGGGAATGGC
CAGAGGAGTGGCTTCTGGCATGAAATATCTCAACGAACTTGGATTCATTC
ACAGGGATATAGCAGCGAGAAATGTTGTTTTGGCTGACAATGGagaatgt
aaaatttcaaattttggcaTGTGCAGAGAACTTGATGGAAAAGGTTGTTT
CATGGCGAAGGATGGTAAAATTGCGATCATATGGGCAGCACCAGAATCAG
CACATCAGAAAATATTCACCACAGCTTCAGATGTGTGGTCTTATGGTATT
TTACTTTGGGAAATCATGTCTTATGGTGAACGACCTTACTGGAACATGGA
ATCTCCTGCTGACGTTTTGGAAGCAATAGATCAAGGTTATCGATTACCTC
CACTAAAGAATTGTCCAAGAGTCGCTTATGACATGATGTTAGAGTGTTGG
GAGATAGAGCATACAAAAAGACCAACAATTAATGAAATCCTTAATCGTAT
TGACAAATGGATAGATAACCCTGAAGAACTTTTAGATGAAGCAACACCAG
ATGGCTATTCATCCTTgTACAGCAACCACAGTAACAAGAATGGAGCTGAT
TATGCAGAAATTTCGGATTATGCTGATCTTAAATCAGTCAATGATTGGGT
TGAAATGAAAGAGACTTCGACATATGGTAAAGTATTAGAGAATCCTTTCG
AAAATGACGAAAACAGTGGACCTGAAATCAATCCAAACTCTTTGACAATT
GTCCAAATGTTGTCCAATGGGAAATCGTTAGATATATCTAAAGGTGCACT
GTTGAAAAATGGAGAAATGAAGACTGTAGTGATCAAGACCTTGAAAGAAA
CAGCCACAGAATCTGACAGGATAGATTTTCTTCAAGAAGCCTCATTGGTT
GGGAAAATGAACCATACAAATATCATCAAATATGAAGGCATTATTCTCAA
ATCACAACCACACACCATCGCATTGGAATATATGTTAAATGGGACATTGA
ACCTATACTTGAAGAAACATGACATGAAGTTGACCAATTTACAACTGTTG
GGAATGGCCAGAGGAGTGGCTTCTGGCATGAAATATCTCAACGAACTTGG
ATTCATTCACAGGGATATAGCAGCGAGAAATGTTGTTTTGGCTGACAATG
GagaatgtaaaatttcaaattttggcaTGTGCAGAGAACTTGATGGAAAA
GGTTGTTTCATGGCGAAGGATGGTAAAATTGCGATCATATGGGCAGCACC
AGAATCAGCACATCAGAAAATATTCACCACAGCTTCAGATGTGTGGTCTT
ATGGTATTTTACTTTGGGAAATCATGTCTTATGGTGAACGACCTTACTGG
AACATGGAATCTCCTGCTGACGTTTTGGAAGCAATAGATCAAGGTTATCG
ATTACCTCCACTAAAGAATTGTCCAAGAGTCGCTTATGACATGATGTTAG
AGTGTTGGGAGATAGAGCATACAAAAAGACCAACAATTAATGAAATCCTT
AATCGTATTGACAAATGGATAGATAACCCTGAAGAACTTTTAGATGAAGC
AACACCAGATGGCTATTCATCCTTgTACAGCAACCACAGTAACAAGAATG
GAGCTGATTATGCAGAAATTTCGGATTATGCTGATCTTAAATCAGTCAAT
GATTGGGTTGAAATGAAAGAGACTTCGACATATGGTAAAGTATTAGAGAA
TCCTTTCGAAAATGACGAAAACAGTGGACCTGAAATCAATCCAAACTCTT
TGACAATTGTCCAAATGTTGTCCAATGGGAAATCGTTAGATATATCTAAA
GGTGCACTGTTGAAAAATGGAGAAATGAAGACTGTAGTGATCAAGACCTT
GAAAGAAACAGCCACAGAATCTGACAGGATAGATTTTCTTCAAGAAGCCT
CATTGGTTGGGAAAATGAACCATACAAATATCATCAAATATGAAGGCATT
ATTCTCAAATCACAACCACACACCATCGCATTGGAATATATGTTAAATGG
GACATTGAACCTATACTTGAAGAAACATGACATGAAGTTGACCAATTTAC
AACTGTTGGGAATGGCCAGAGGAGTGGCTTCTGGCATGAAATATCTCAAC
GAACTTGGATTCATTCACAGGGATATAGCAGCGAGAAATGTTGTTTTGGC
TGACAATGGagaatgtaaaatttcaaattttggcaTGTGCAGAGAACTTG
ATGGAAAAGGTTGTTTCATGGCGAAGGATGGTAAAATTGCGATCATATGG
GCAGCACCAGAATCAGCACATCAGAAAATATTCACCACAGCTTCAGATGT
GTGGTCTTATGGTATTTTACTTTGGGAAATCATGTCTTATGGTGAACGAC
CTTACTGGAACATGGAATCTCCTGCTGACGTTTTGGAAGCAATAGATCAA
GGTTATCGATTACCTCCACTAAAGAATTGTCCAAGAGTCGCTTATGACAT
GATGTTAGAGTGTTGGGAGATAGAGCATACAAAAAGACCAACAATTAATG
AAATCCTTAATCGTATTGACAAATGGATAGATAACCCTGAAGAACTTTTA
GATGAAGCAACACCAGATGGCTATTCATCCTTgTACAGCAACCACAGTAA
CAAGAATGGAGCTGATTATGCAGAAATTTCGGATTATGCTGATCTTAAAT
CAGTCAATGATTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001306XLOC_001306Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002428-exon-sc0000020-1491911889:233897..234094TCONS_00002428-exon-sc0000020-1491911889:233897..234094Clytia hemisphaericaexon
TCONS_00002428-exon-sc0000020-1510915933:233897..234094TCONS_00002428-exon-sc0000020-1510915933:233897..234094Clytia hemisphaericaexon
TCONS_00002428-exon-sc0000020-1575043694:233897..234094TCONS_00002428-exon-sc0000020-1575043694:233897..234094Clytia hemisphaericaexon
TCONS_00002428-exon-sc0000020-1491911889:234387..234554TCONS_00002428-exon-sc0000020-1491911889:234387..234554Clytia hemisphaericaexon
TCONS_00002428-exon-sc0000020-1510915933:234387..234554TCONS_00002428-exon-sc0000020-1510915933:234387..234554Clytia hemisphaericaexon
TCONS_00002428-exon-sc0000020-1575043694:234387..234554TCONS_00002428-exon-sc0000020-1575043694:234387..234554Clytia hemisphaericaexon
TCONS_00002428-exon-sc0000020-1491911889:234725..234823TCONS_00002428-exon-sc0000020-1491911889:234725..234823Clytia hemisphaericaexon
TCONS_00002428-exon-sc0000020-1510915933:234725..234823TCONS_00002428-exon-sc0000020-1510915933:234725..234823Clytia hemisphaericaexon
TCONS_00002428-exon-sc0000020-1575043694:234725..234823TCONS_00002428-exon-sc0000020-1575043694:234725..234823Clytia hemisphaericaexon
TCONS_00002428-exon-sc0000020-1491911889:235222..235326TCONS_00002428-exon-sc0000020-1491911889:235222..235326Clytia hemisphaericaexon
TCONS_00002428-exon-sc0000020-1510915933:235222..235326TCONS_00002428-exon-sc0000020-1510915933:235222..235326Clytia hemisphaericaexon
TCONS_00002428-exon-sc0000020-1575043694:235222..235326TCONS_00002428-exon-sc0000020-1575043694:235222..235326Clytia hemisphaericaexon
TCONS_00002428-exon-sc0000020-1491911889:235701..235853TCONS_00002428-exon-sc0000020-1491911889:235701..235853Clytia hemisphaericaexon
TCONS_00002428-exon-sc0000020-1510915933:235701..235853TCONS_00002428-exon-sc0000020-1510915933:235701..235853Clytia hemisphaericaexon
TCONS_00002428-exon-sc0000020-1575043694:235701..235853TCONS_00002428-exon-sc0000020-1575043694:235701..235853Clytia hemisphaericaexon
TCONS_00002428-exon-sc0000020-1491911889:236237..236281TCONS_00002428-exon-sc0000020-1491911889:236237..236281Clytia hemisphaericaexon
TCONS_00002428-exon-sc0000020-1510915933:236237..236281TCONS_00002428-exon-sc0000020-1510915933:236237..236281Clytia hemisphaericaexon
TCONS_00002428-exon-sc0000020-1575043694:236237..236281TCONS_00002428-exon-sc0000020-1575043694:236237..236281Clytia hemisphaericaexon
TCONS_00002428-exon-sc0000020-1491911889:237169..237326TCONS_00002428-exon-sc0000020-1491911889:237169..237326Clytia hemisphaericaexon
TCONS_00002428-exon-sc0000020-1510915933:237169..237326TCONS_00002428-exon-sc0000020-1510915933:237169..237326Clytia hemisphaericaexon
TCONS_00002428-exon-sc0000020-1575043694:237169..237326TCONS_00002428-exon-sc0000020-1575043694:237169..237326Clytia hemisphaericaexon
TCONS_00002428-exon-sc0000020-1491911889:238151..238233TCONS_00002428-exon-sc0000020-1491911889:238151..238233Clytia hemisphaericaexon
TCONS_00002428-exon-sc0000020-1510915933:238151..238233TCONS_00002428-exon-sc0000020-1510915933:238151..238233Clytia hemisphaericaexon
TCONS_00002428-exon-sc0000020-1575043694:238151..238233TCONS_00002428-exon-sc0000020-1575043694:238151..238233Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002428-proteinTCONS_00002428-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000020supercontigsc0000020:233897..238233 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0886944	0	0.100424	0.0491247	0.418633	0.472584	1.19732	0.693901	0.784781	0.648052	0.673945	0.502095	0.884817	0.735113	1.86345	2.4862	1.86431	2.21796	1.74426	1.77591	4.28774	2.94888	0.915257	1.43306	0.714204	0.594916	9.60779	4.47788	4.23308	2.95881
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001245Ser-Thr/Tyr_kinase_cat_dom
IPR000719Prot_kinase_dom
IPR020635Tyr_kinase_cat_dom
IPR008266Tyr_kinase_AS
IPR011009Kinase-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0004672protein kinase activity
GO:0005524ATP binding
GO:0004713protein tyrosine kinase activity
Vocabulary: Biological Process
TermDefinition
GO:0006468protein phosphorylation
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006468 protein phosphorylation
molecular_function GO:0005524 ATP binding
molecular_function GO:0004672 protein kinase activity
molecular_function GO:0004713 protein tyrosine kinase activity
Blast
[Close]
BLAST of TCONS_00002428 vs. Swiss-Prot (Human)
Match: EPHA3 (Ephrin type-A receptor 3 OS=Homo sapiens GN=EPHA3 PE=1 SV=2)

HSP 1 Score: 283.878 bits (725), Expect = 8.355e-87
Identity = 133/287 (46.34%), Postives = 199/287 (69.34%), Query Frame = 1 
Query:   40 ENPFENDENSGPEINPNSLTIVQMLSNGKSLDISKGAL-LKNGEMKTVVIKTLKETATESDRIDFLQEASLVGKMNHTNIIKYEGIILKSQPHTIALEYMLNGTLNLYLKKHDMKLTNLQLLGMARGVASGMKYLNELGFIHRDIAARNVVLADNGECKISNFGMCREL--DGKGCFMAKDGKIAIIWAAPESAHQKIFTTASDVWSYGILLWEIMSYGERPYWNMESPADVLEAIDQGYRLPPLKNCPRVAYDMMLECWEIEHTKRPTINEILNRIDKWIDNPEEL 891
            E+P +       E++  +++I +++  G+  ++  G L L + +  +V IKTLK   TE  R DFL EAS++G+ +H NII+ EG++ KS+P  I  EYM NG+L+ +L+KHD + T +QL+GM RG+ASGMKYL+++G++HRD+AARN+++  N  CK+S+FG+ R L  D +  +  + GKI I W +PE+   + FT+ASDVWSYGI+LWE+MSYGERPYW M S  DV++A+D+GYRLPP  +CP   Y +ML+CW+ +   RP   +I++ +DK I NP  L
Sbjct:  603 EDPTQAVHEFAKELDATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYLSDMGYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGERPYWEM-SNQDVIKAVDEGYRLPPPMDCPAALYQLMLDCWQKDRNNRPKFEQIVSILDKLIRNPGSL 888
The following BLAST results are available for this feature:
BLAST of TCONS_00002428 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
EPHA38.355e-8746.34Ephrin type-A receptor 3 OS=Homo sapiens GN=EPHA3 ... [more]
back to top