XLOC_000975 (gene) - C. hemisphaerica

Overview
NameXLOC_000975
Unique NameXLOC_000975
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000012:842718..852717+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_000975 ID=XLOC_000975|Name=XLOC_000975|organism=Clytia hemisphaerica|type=gene|length=10000bp|location=Sequence derived from alignment at sc0000012:842718..852717+ (Clytia hemisphaerica)
TGCTGTTACATGTAGCAAAGACGCTGAACCAATAACGACATCGATTGTTG
GAAAGAAGAAGCTTTGAACTCGGGGACTTGCATCTGACATTGCACCAGAC
GTATACATGGTCACAAATAGTAACATCTGAAAGATAACCAGAAGATCAGA
AACTGCTAGATTGCAAATGAAGTAACCAGTGGTATTGCGAAGATGTTTGA
TTTTGTATACGGTCATTAGAATCAAAACGTTAGCAAAGAAACCGATCGGT
GTCAACACAGAGAGGATAATGAATGTAAGTAAGCGCCAGGCTGGATTCAA
AACACCTGCTGCGTGATGATTAGCTGACAAACAAACATCTCTGTATAATT
GCTCTTCCTGTGGGCTTCTATTATCTTTCATATAATTGCAAACATCCCTA
ATGAGTATATCAGGATGAGTCTCATTGTTAGGGTTCACAGTCTTGTTCAG
GATCATGAACGGTATCGGGTCACAGCAATGATCGTAAAAAATTCTCTCTT
CAAATGTCACCATTGATGCATTGATACTTTCAATTATACCACAAATGTTC
GGCAAAATAACATAGATTAGCTCAGAAACACTTCCTGTCGGCTGCATCAT
CTGCATAATATCATTGCAAGATGTAACATTCATCTTTATTCGCTTTTTAC
TTCGCCACGTTGATTATGGTCACTCTAGTTTTTTTGCCTAACAGAATCAG
TAGcattgaaacttatctcatcATCTAAAAAGAACAGTTAGAATTACTTT
ACACATCATTATAGTCAATCAAGCGATAAAGATTTACGAAGAAACATGTA
GATAGAGGAAATATCTTAATACCAAGGCATCACGCCTTAAATCAATTAGG
AAGACTTTTAAGCGGAGGAGAATCCCCTGATAAAAGTTCTCTATTATACA
GATAATTgcaaaaagtatttttcagTTCTATTGTTATCGTGTATGGTTGA
AAGAAATTTCCCATTTTTaagtaaacaaacaaacaaacacacaaATTAAA
CTTTGACAGCAAACTTTAATTTATTCCTCATCAGCATCATAACGATCATC
ATCAGCACATTGTTCACTTGACAAAAAACAAATTGCATCTGACAACTAGA
TGAGAAAagtaccaaaaatatttttcaatgatcaGCTTGTAATTAGATCT
AATTTGATTAGAATGTGAGGCATTTATCATAACTTTGTGACTATTAGAGA
CCTCTTTAAAATATTGTTACTGCTAGCTCAATGATAGCCATACCTTTTGT
CATTTGGATCGAGCCAACAAATAATTAGAAAGGAAGGCAAATATTGGATA
TATAGGTCCTTCTTTGTTCCTTCTATAGGGGAGGGGTTCTTCGTTTTGCA
ATTTCTAAATTGCATgataaacaaataaataaaaaggagtTCCATCGTTG
ACACGGaatcaaattgaaaaatcgTTTGAATAATTTCTCAAGGTAGCCGA
TTAATTTTGTGTTTCTCAAAAAAGGAAGTACGTCATTGCAGGGACTGATC
ACCAAGAACAGACCCAGGTTGTGTTAGTTTAGACAACATAGTGACTATAC
CGAATGAGTCCGTTGCCTTAAGTGCTCCCCCTTGGAGAAACAACATAATA
ACAAAATCatcagaataaaaacaaaattatgaGCATAAATGCAAATTCAT
CAACATAAAGGCATAAAATATTCAGCATAAAacacaaaatattcaaaata
ttcaacGCCTAGTAGTGAGTGGTCATCGTTTTTTACTTTCGTGCTGAagg
tcagggttcgattcccactcggtgctaCGGTTCACTtagcaagtgaatgt
accttggccCGAGTCAGCctataccatgtgaggggaatagggtaccatca
ctctgatacaagagtatggggagcTATGCCGGGCATTGAATGTGGTGTGA
TGTTGGTACTAATATGTTCAGTACCTGCGAGAACGCAAGGTTCTCACGTA
CTGTGCGAGTATCATCATCAATACAGCACGGCTCTAATGTGTCGCAAGCA
CATAGTATaatgtctggtaagcgctgtgatttccctatcaaggggtagga
aactatcccgggatagggcccggtccgatgatatcggagggtcTGCTTCT
CTTCTCTTCTCTCATTCAACgtgaaagcaaaaatattaacataaaaacaa
aatcatcaatgtaaaaacaaaatcatcaacATAAAAGCAAAATCATAAAC
ATGAAAGCAAAATCATTaatgtaaaagcaaaatcatCAACATAAAAGCAA
AATCATCAACATGAAAGTAAGCTGATAACAGATAGTCATGATTTTCTTAT
TCACTATAAACCTCTGAAGgtgcttgaaaattaaccatctgaaGAGCCAC
CTTCATAACTTGTTAAGTGCCGTGATGTCAAAAGGATCTTTTTCTGATGG
ATACAGTGCTCTTACGCGACGACGTAGTGTAAAAGTCGATGTAAAAGGAC
CTTGTGTAAAACGGGCCGCAAAGgctttcaaccgttacgtcagatcgcgc
caatggaattgctttatttttcttttgaccaaaagcgtggaagctttgtt
cgaaaaagtgcgatcgcagcgcgtgcAAGTGGACACCGGCCTTTAGATTA
CTCTGTAGACTtcagaaatgactaaaattacTCCAAACCAAAAAGGGTGC
AAGCTGACAAATTGGGGTCTTGAGTGCTCCCAAAGATTTGGGAATACCAG
GAAATGGAATTAACTCTCCTACACAACTGATTCTACAGCTTCAGTTGAAC
TCGTAATCAACACCGATAAATCGAATGTGTCACCATGAACTGTACTGTTA
AGCAACATCTTATGGTTAGTTCTAAAGCAGCTGAAAAGAGTTTACAATTT
CTGGTACTTGCGGATCCATGGTTGCAAATAGTCACAAAGACTTCCAAAGT
AGGTTTGCGTTCAGTAAACTTGAAAAGATTTTACGCTAAAGCTCCTTCCT
ATTTTACAGTTGTGAAATTTGGACCATCTACGAAGAAATATGTTTGGAAT
CAAAAGTTTGATAGAGTTCCAAATTAAAAGATCTAAAACATCTCCAATGA
TAACTGTTAGATTGAACCAACCAGAATCAACTGAAGTTTCTTGGTCACAA
CTTGTCATTGGACAACAATGAGATGACAAAAAATCTGTGTGCTCTATCTT
CACGGAAAATGGAGAAGCTGTCaatctttattattattataatgtaaAAA
AGTTCTAGACGCACGAGGGCCTCTGGAACTGATCGCGATTATacgtattt
tacaattgtcttgtgttGAATCTTTTCGGATGTTTACTCCATGCAGTgtt
gagtctttctttgaagactttgactGTCTTTGCCTCAGCGACATCTTTTG
GCAATTTATTCCAGGTTGGtatagttcgataaaagaagGAATTCGTTTGT
ACACCACGGATCTTGATTTAGATTATAAAATAAATCGGCCCAACTGATAT
TTCTGTGGTTCAAGGCTGAACTGACTCACCCGCTCTGCTCGGCTTAGggg
ccactcacatatcgatgtttccaacgactaacgtcaaatcgACGCAAGGG
GGTGGGGGATCAGAGGCATTGACGCTAAGAAGCTGATTGAATACTCATTT
TTCTAACAGATATGccagatattttttttattttgttaactACTCTCGCT
ACTCATAGTTTACACAAAATATTGGTGTCAAGACGAGACGAGACGAGACG
AGACGAGCCAAtcgattttctaaattttcaagtttGGTTGGTTcgtgtaa
aaaaaataatagattacgattttatcgattttcggtgGCTGATGCTGATG
CTGAGGGTAGGGGTGGGGGTCTTGGACGAGGGCCGAGTCTCAGTTATCTT
CTTTTTGGACTATGGAAGGCTTTTCCCGTCAAAAGGTGGactttttgaaa
tcaaatcaaaatgaaaaatcaaatctttCGAAAGGTTGAAGTTTTACGAA
ACAGAAGGTTTAAAAGTTCTGTATTCCGCCCTAAAcgatattattttttc
tttcgtCGTCGGCTTTCGACTGTAGAGCAGATGAGTCAGTTCAGTCTTGA
GCCACGGAAATATCAGTTTTATTTTATAATCTAAATCAAGATTGACAGCT
TCTCCATTTTCCGTGAAGATAGAGCGCGTATATTTTTGTAATCTCATTTT
TGCCCAGTGAGACATTCAGTTGATGCAATCTGACAGTTATCATGTGAGAT
GAGATGTAGCTTCAAAGATTTGTTAATTTGGAGTTCTATCAAGCTTTTGA
TTCCAAAcataattacacccctgtgtcacagacccactgggacccaagcc
ccactgggaaatttggccgaaatttgtccccggtgggaaaataccttgaA
ATTCCAGCCCCATTGGgatattaattttgatttcatccccattagaaatt
caaagtttaaaaattgcactccaaaaccatccccactggattttttaacc
ttgaaacaatagaatttctctccccattgagattttgaTAAgagttttta
tccccgctgaggaaaaaagttccaccggggctgtgagacaggggcgtATA
ATTCATTTTTGTATGAAATGTGTTAATCTTTGAAGTCATTTCTTCGTAGA
TAGTCCAAATTTCACAACTGTAAAATAAGACGGAGCTTTAGCGCAAAATC
ATTTCCAATTTTTGGAACACAGACCTACTTTGGAAGTCCTTGTGACTATT
TGTAACCATGGATCCCAAGTACCAGAAGTTATCGACTCTTTTCAGCTGCC
TTAGAACTGACCACAAGATGTTGCTTAACAGTAAGGTTTATGGTGACACA
TTCGATTTTTCGATGTTGATTACAAGTTCAACTGAAGCTTTAGAATCAGT
TGTGGCAGAAGAGTTGTTAAAAGTCCACATCTGTCAGACTCTATTCGTTT
TTGTTTTGGAGTAatttcagtaatttctgaaGTTTGCAAAGTAATGTAAA
GTTGAAGATCCACATCTCTTTGAAATCTCAATATTATTCACTGTTCGTCT
TTATGTGAAGTCAACTCAATTTCTCTTAATCTTAATCTTCATAATGATTT
TCGAATAACGACCTTGAATCCCGAATAACAgggaaaaatttatattttat
acataggaaatgttgaaaattcaaattaaagGCAGTGGGTACCGTGAGTA
TCAGATTGTATGAATCTTATATAATGTAACGACATTTTGCGATTTTAATC
AGCGAGAACCAGAACAAGAGTGACCATGGTTGCCATCCCAGATCTTGGAT
GAAGGCCAGTCAATCGAATCACAAGAAACAAGGGCAAAAAAGCATAGTAC
AGAGTAACATCTCAGAATATAGCATGCAGACCTCTCTACTATTACGAGTC
AAATAAACTACAAGTGCCTAAtaaaaatcccccccccccccgctggTTAA
TTTTTCGAGTGTGATTGAGACGTAAAAGTCTTACCGTAGCTCTTCCCACA
GGTTAAATTTTAGAGAAAGCTAATCTGTAGTGTTCGCGGTATTTATTGAT
TGCATCTTTTAATGCTATTGctttgagccaaaaaaatcAGACCAGATTCT
AAAAATCGCAGTGTTATTTTCTAATCGGAAAGAGAGTTATGGGTATTTCT
GAAACCATGCTCGCACGTGACGGTTCTGTTACGCTCACTGActtttatat
accctggacgaATTTTCTCAATcctggccaagcaaaatctttgatcggag
ttttttgtaagtggtaccctaatggtagcacttctcaatagcggtgaaaa
tgAATCGAGAGCGCTAGCtctacttttcctcgaatactttttatgatgaa
gcgccgcgttagacgttaatttttaacattgtaatggcttcttctcgggt
accaattctaaaaaactccaaacaaagatggcggatataatatagctttg
tccagggtatataaaggtcagtggtttcgctacgaaacgaaatgaagcca
ttctattagttagaagtgacgtaaaacttgaatgtAAGCAATAGAATATG
GCTTCAAACAAAGACGGCGAAACGGAATCGTAACGTCTGAACAATCTGAG
TATCTGCAAAATTAGTAAACGAGAACGTTGGCGATTTTTGATAGGTTGTT
TgtaaagtctgttccaaaaaatttgacactACGCACTATTTTAAATATCA
CAGGGAAAAAAACATAACTAAAAGTAGTatttcgttggaaagataatttt
gagcagTTTGATGTAAACTTTGCAGATttttggtccagcgcgcagcagaa
tggacctttaaaaagcaactgattgaaaagattttgtctttgtcggggcc
tgtgcgcgcaataaattaacaagtccaggctaaaccaaccaccgatctag
aattttttgttttggaatgaattggtagtagagtcaaatttcccggttag
attattaaagggttgtttcaggtagggttagggctagggttggggatggg
agttaacccctggttagggttttagcccccgggtagagtttggagtaaat
accatgtttataaggaaATTTGAACTCCTGAATacagttgtgactcgatg
gccgagtggttaaggcgctggcgttctaatcataggtgctttgtatatag
tgTGTTCGAATCCGACCAtcggcaaaagtttcgaaatttcgggaaatgct
tcaaaaatttaaaaacttagcaatacaaagaaagtgtcaaagaatagaag
ctcagagtggaggatgggaaggaaagttttttgcgtcacttaaggaaccc
ggtacgaacgacattcggttattgccacgtcagctggaccttcacgccgc
tccggcttcttgttccttatcaaaaagctttaatattattcttataaaat
tttaaaccCGCTAAAAAGttgagatattttacaaatttccctttACTATA
ATTAATTTACGTTGCGAGGTTGTTGGTTTGATCCCAagtcgggtcatacc
aaagattctcgaAATGGTACCtggtgcctctctgcttgattgTCAGCAAC
TACAGAGGCGAATCGAGGGTAAGTAGAGAAATCCAGAGAAAGGAATGGAG
CACTGAAATACCTTCGGTTGGGCTTCGACTGtagtcgcaaacttacttat
gTATCTCGTTTTCTGGAAACTAAATACTCGTCGAAAAACGAGTTGATTGA
TTCAAAAACAATATGGGTGTTTTAACAGGCTTAACACTCGAAACTGGAAA
AAAAATGATGGAAACCATTTTAAGTATATTCCTCTTTTTATGGATAAACG
TAGAAGATTAAATATGTTTTAGTACCTATACAAGTATTATATACAATTGT
CACACGAAATgcaacaaaaaaatacaaatgaaaacaaattttcgattttg
aacTTAAAAATATTAACTTCTAAATATATACATTTTAGATATGTAGGTTA
CAATAAAAACGAACGATGCAAGGTGAATATACCTGCCGGTATGTCGAAAA
ACAGAACAATATGGAGAATTTCCTCTCTGCATTTCaatttgtcaatatat
tttaaggaagttaaaaagaaaattactcGCGATCGTAGATAAAGTAATGA
CTATAATTCTTAGAGGTAATAATAGAAGTAAATTCGTAAGATTTTAATCT
CACGCCCTACAAGTTTTTCAACTCACCAAAGTTTACCCTTCAGAATCAGA
GAGTAGTATATTAGAATTATTggaattgaaataaaatctacGTGCATTAT
ACATTAACGCCTTTATCTAAATCTTCACGTTCAATTAAAGTTTGTTTCTC
TGGAGATTCATTCGTGGTCTCCTTTTTGCCATCACCGTCTAATAGATTTT
CAGAATGTCTTCTCGAAGCTGTCTCGACCATACTGTTGCTTGACCGATCG
TTTATCACGAAAGACATACTCGTTAATTCACTCTCGCGTCTAATAAAAGA
CTGCGTCagttttttacataattttgatCTTGAAAGTAGCATTAATGAAC
TCTTCCTCAAGGATCGAGTGAACATTAAATAAGTCAATGGATTTAAACAT
GAAATTACGAACGGTACGAAAGGGATTAACCAATTTTGAAAACCGGTAAT
ATCCTTGCCAGCTACAATTTCATAAGTATTACACGTCATGAAATAACCCC
ATCCGCAAACAAAAGGAACTGTCATTATTGCCACGTTAAAAGCGATCTTG
ATTTCTCGAAACCTTGCTGGTCTCATTGATGCAACTTTTTCCAGATTCTC
TTGATCCATTGTGGATATAACGACAATAACTTTGCtgattttcttttcca
ttttcatATTCTTTAACGCTGATACCAGAATAAAACCATAGGAGACAAGT
ACTAATATACAAGGGATGAAAAAGCTCAATGTAGCAGCGATGAAGAAAAA
CACTGAATTGTAGACGTCGCTGACAACCGGTATCCGTAATAAACCCATTA
CGAGGAGCACCAAACAATAAACCCAGATTCCAATAATAGTACGGTTTGCT
GTCCGATCATTAAGGTACCTTGGATATCTCAAAGGCATTGATACAGCTAT
GCCTCTTTCCATAGTTACTGCTGTTACATGTNCATAGATATGACAACGAT
AACTTTGCtgattttcttttccattttcatATTCTTTAACGCGGATACCA
GTATAAAACCGTAAGAGACAAGCACTAATATACAAGGGATGAAAAAGCTC
AATGTAGCAGCGATGAAGAAAAACACTGAATTGTAGACGTCGCTGACAAT
CGGTATTCGTAATAAACCCATGACGAGGAGCACCAAACAATAAATCCAGA
TTCCAACAATGGTACGATTCGCTGTTCGTTCATTAAGGTACCTTGGATAT
CTCAAAGGCATTGATACAGCTATGCCTCTTTCCATAGTCACTGCTGTTAC
ATGTAGCAACGAAGCTGAACCAATAACGACATCGATTGTTGGAAAGAAAA
AGCTTTGAACTCGTGGGCTCGCCTCTGACATTGCACCAGACGTATACATG
GTCACAAATAGTAGCATCTGAAAGATAACCAGAAGATCAGAAACAGCCAG
ATTGCAGATGAAGTAACCAGTGGTATTGCGAAGATGTTTGATTTTGTATA
CGGTCATAAGGATCAAAACGTTAGCAAAGAAGCCGATCGGTGAAAGCAAG
GATAGAATGATGAATGTCAATAGTCGCCATGCTGGATTTAAAACGGAAGA
ATTATTTGTTGAAGAATTTAAACAGATCTCTTGGTAGAGAGCTTCTTCTT
GTTGGTTTCGATTATGGTGCATATAATTACACACGTCACTAATCAATTGT
TCTGGGTGCGTCTCATTATTTATATTTACAGTCTTATTGAGGATCATAAA
GGGTATCGGGTCACAGCAATGATCGTAAAAGATTCTCTCCTCGAATGTCA
CCATAGATGCATTAATACTGTCAATTATACCACAAATATTTGGCAAGATG
ACATGAATCAAATCTGCAGACACTGTTCCGGAAGGTTGTACCATTTTCAT
GATATCATTACATGAAGTCACGTTCATTTTAACAATAGTTGGGATGTAAG
GCTTCCCAATGCCCTTCTTGTTCTACTGATGTCGATCGAATGAATGTACT
CGCAGTAGATCAcgtctttttgttcaatttgtcTTATCTTCGCTCACACC
ACTCAACTTTTCGTTAACGTTGATAGTGGACTTTCTGTTGTCTTTGATAT
CTGATGTCCCTTTGAAGATGACTATCTATATGCCTTGCTTTTCTGTTTTT
CCTACAACGAAAGTACGATAACGGTACATtagagaaaaaggaaaaagtta
GGGAGCTAGATAACAAGTATAAAATTCATCCTATTTCGTCTCTTTGAAGG
CTGATCGTGTATCTTTCTGTATTGTAGGTATGGATTAGTCAATTAACCGT
CCCACAGGGAATATATGCGACCATTTTATattgatttggaaaaaatatac
tGAAGTGTCGTTACTATACAGCCAAGCTGTTCTGATGATGCTTTTCCAGT
AAGTATTTTCCATACCCTCAGAATTAAGATTTAAGATTGTTGCGGTCATT
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00001844TCONS_00001844Clytia hemisphaericatranscript
TCONS_00001845TCONS_00001845Clytia hemisphaericatranscript
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000012supercontigsc0000012:842718..852717 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.18	0.2	0	0.43	0.49	0.34	0.32	0.3	0.32	1.04	0.56	0.37	0.8	0.26	0.35	0	0	0.61	0	0.16	0.24	0.39	0.28	0	0	0	0	0	0.35