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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001844 ID=TCONS_00001844|Name=TCONS_00001844|organism=Clytia hemisphaerica|type=transcript|length=994bp
TGCTGTTACATGTAGCAAAGACGCTGAACCAATAACGACATCGATTGTTG
GAAAGAAAAAGCTTTGAACTCGTGGGCTCGCCTCTGACATTGCACCAGAC
GTATACATGGTCACAAATAGTAGCATCTGAAAGATAACCAGAAGATCAGA
AACAGCCAGATTGCAGATGAAGTAACCAGTGGTATTGCGAAGATGTTTGA
TTTTGTATACGGTCATAAGGATCAAAACGTTAGCAAAGAAGCCGATCGGT
GAAAGCAAGGATAGAATGATGAATGTCAATAGTCGCCATGCTGGATTTAA
AACGGAAGAATTATTTGTTGAAGAATTTAAACAGATCTCTTGGTAGAGAG
CTTCTTCTTGTTGGTTTCGATTATGGTGCATATAATTACACACGTCACTA
ATCAATTGTTCTGGGTGCGTCTCATTATTTATATTTACAGTCTTATTGAG
GATCATAAAGGGTATCGGGTCACAGCAATGATCGTAAAAGATTCTCTCCT
CGAATGTCACCATAGATGCATTAATACTGTCAATTATACCACAAATATTT
GGCAAGATGACATGAATCAAATCTGCAGACACTGTTCCGGAAGGTTGTAC
CATTTTCATGATATCATTACATGAAGTCACGTTCATTTTAACAATAGTTG
GGATGTAAGGCTTCCCAATGCCCTTCTTGTTCTACTGATGTCGATCGAAT
GAATGTACTCGCAGTAGATCAcgtctttttgttcaatttgtcTTATCTTC
GCTCACACCACTCAACTTTTCGTTAACGTTGATAGTGGACTTTCTGTTGT
CTTTGATATCTGATGTCCCTTTGAAGATGACTATCTATATGCCTTGCTTT
TCTGTTTTTCCTACAACGAAAGTACGATAACGGTACATtagagaaaaagg
aaaaagttaGGGAGCTAGATAACAAGTATAAAATTCATCCTATTTCGTCT
CTTTGAAGGCTGATCGTGTATCTTTCTGTATTGTAGGTATGGAT Run BLAST on NCBI transcript from alignment at sc0000012:842718..852552+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00001844 ID=TCONS_00001844|Name=TCONS_00001844|organism=Clytia hemisphaerica|type=transcript|length=9835bp|location=Sequence derived from alignment at sc0000012:842718..852552+ (Clytia hemisphaerica)
TGCTGTTACATGTAGCAAAGACGCTGAACCAATAACGACATCGATTGTTG
GAAAGAAGAAGCTTTGAACTCGGGGACTTGCATCTGACATTGCACCAGAC
GTATACATGGTCACAAATAGTAACATCTGAAAGATAACCAGAAGATCAGA
AACTGCTAGATTGCAAATGAAGTAACCAGTGGTATTGCGAAGATGTTTGA
TTTTGTATACGGTCATTAGAATCAAAACGTTAGCAAAGAAACCGATCGGT
GTCAACACAGAGAGGATAATGAATGTAAGTAAGCGCCAGGCTGGATTCAA
AACACCTGCTGCGTGATGATTAGCTGACAAACAAACATCTCTGTATAATT
GCTCTTCCTGTGGGCTTCTATTATCTTTCATATAATTGCAAACATCCCTA
ATGAGTATATCAGGATGAGTCTCATTGTTAGGGTTCACAGTCTTGTTCAG
GATCATGAACGGTATCGGGTCACAGCAATGATCGTAAAAAATTCTCTCTT
CAAATGTCACCATTGATGCATTGATACTTTCAATTATACCACAAATGTTC
GGCAAAATAACATAGATTAGCTCAGAAACACTTCCTGTCGGCTGCATCAT
CTGCATAATATCATTGCAAGATGTAACATTCATCTTTATTCGCTTTTTAC
TTCGCCACGTTGATTATGGTCACTCTAGTTTTTTTGCCTAACAGAATCAG
TAGcattgaaacttatctcatcATCTAAAAAGAACAGTTAGAATTACTTT
ACACATCATTATAGTCAATCAAGCGATAAAGATTTACGAAGAAACATGTA
GATAGAGGAAATATCTTAATACCAAGGCATCACGCCTTAAATCAATTAGG
AAGACTTTTAAGCGGAGGAGAATCCCCTGATAAAAGTTCTCTATTATACA
GATAATTgcaaaaagtatttttcagTTCTATTGTTATCGTGTATGGTTGA
AAGAAATTTCCCATTTTTaagtaaacaaacaaacaaacacacaaATTAAA
CTTTGACAGCAAACTTTAATTTATTCCTCATCAGCATCATAACGATCATC
ATCAGCACATTGTTCACTTGACAAAAAACAAATTGCATCTGACAACTAGA
TGAGAAAagtaccaaaaatatttttcaatgatcaGCTTGTAATTAGATCT
AATTTGATTAGAATGTGAGGCATTTATCATAACTTTGTGACTATTAGAGA
CCTCTTTAAAATATTGTTACTGCTAGCTCAATGATAGCCATACCTTTTGT
CATTTGGATCGAGCCAACAAATAATTAGAAAGGAAGGCAAATATTGGATA
TATAGGTCCTTCTTTGTTCCTTCTATAGGGGAGGGGTTCTTCGTTTTGCA
ATTTCTAAATTGCATgataaacaaataaataaaaaggagtTCCATCGTTG
ACACGGaatcaaattgaaaaatcgTTTGAATAATTTCTCAAGGTAGCCGA
TTAATTTTGTGTTTCTCAAAAAAGGAAGTACGTCATTGCAGGGACTGATC
ACCAAGAACAGACCCAGGTTGTGTTAGTTTAGACAACATAGTGACTATAC
CGAATGAGTCCGTTGCCTTAAGTGCTCCCCCTTGGAGAAACAACATAATA
ACAAAATCatcagaataaaaacaaaattatgaGCATAAATGCAAATTCAT
CAACATAAAGGCATAAAATATTCAGCATAAAacacaaaatattcaaaata
ttcaacGCCTAGTAGTGAGTGGTCATCGTTTTTTACTTTCGTGCTGAagg
tcagggttcgattcccactcggtgctaCGGTTCACTtagcaagtgaatgt
accttggccCGAGTCAGCctataccatgtgaggggaatagggtaccatca
ctctgatacaagagtatggggagcTATGCCGGGCATTGAATGTGGTGTGA
TGTTGGTACTAATATGTTCAGTACCTGCGAGAACGCAAGGTTCTCACGTA
CTGTGCGAGTATCATCATCAATACAGCACGGCTCTAATGTGTCGCAAGCA
CATAGTATaatgtctggtaagcgctgtgatttccctatcaaggggtagga
aactatcccgggatagggcccggtccgatgatatcggagggtcTGCTTCT
CTTCTCTTCTCTCATTCAACgtgaaagcaaaaatattaacataaaaacaa
aatcatcaatgtaaaaacaaaatcatcaacATAAAAGCAAAATCATAAAC
ATGAAAGCAAAATCATTaatgtaaaagcaaaatcatCAACATAAAAGCAA
AATCATCAACATGAAAGTAAGCTGATAACAGATAGTCATGATTTTCTTAT
TCACTATAAACCTCTGAAGgtgcttgaaaattaaccatctgaaGAGCCAC
CTTCATAACTTGTTAAGTGCCGTGATGTCAAAAGGATCTTTTTCTGATGG
ATACAGTGCTCTTACGCGACGACGTAGTGTAAAAGTCGATGTAAAAGGAC
CTTGTGTAAAACGGGCCGCAAAGgctttcaaccgttacgtcagatcgcgc
caatggaattgctttatttttcttttgaccaaaagcgtggaagctttgtt
cgaaaaagtgcgatcgcagcgcgtgcAAGTGGACACCGGCCTTTAGATTA
CTCTGTAGACTtcagaaatgactaaaattacTCCAAACCAAAAAGGGTGC
AAGCTGACAAATTGGGGTCTTGAGTGCTCCCAAAGATTTGGGAATACCAG
GAAATGGAATTAACTCTCCTACACAACTGATTCTACAGCTTCAGTTGAAC
TCGTAATCAACACCGATAAATCGAATGTGTCACCATGAACTGTACTGTTA
AGCAACATCTTATGGTTAGTTCTAAAGCAGCTGAAAAGAGTTTACAATTT
CTGGTACTTGCGGATCCATGGTTGCAAATAGTCACAAAGACTTCCAAAGT
AGGTTTGCGTTCAGTAAACTTGAAAAGATTTTACGCTAAAGCTCCTTCCT
ATTTTACAGTTGTGAAATTTGGACCATCTACGAAGAAATATGTTTGGAAT
CAAAAGTTTGATAGAGTTCCAAATTAAAAGATCTAAAACATCTCCAATGA
TAACTGTTAGATTGAACCAACCAGAATCAACTGAAGTTTCTTGGTCACAA
CTTGTCATTGGACAACAATGAGATGACAAAAAATCTGTGTGCTCTATCTT
CACGGAAAATGGAGAAGCTGTCaatctttattattattataatgtaaAAA
AGTTCTAGACGCACGAGGGCCTCTGGAACTGATCGCGATTATacgtattt
tacaattgtcttgtgttGAATCTTTTCGGATGTTTACTCCATGCAGTgtt
gagtctttctttgaagactttgactGTCTTTGCCTCAGCGACATCTTTTG
GCAATTTATTCCAGGTTGGtatagttcgataaaagaagGAATTCGTTTGT
ACACCACGGATCTTGATTTAGATTATAAAATAAATCGGCCCAACTGATAT
TTCTGTGGTTCAAGGCTGAACTGACTCACCCGCTCTGCTCGGCTTAGggg
ccactcacatatcgatgtttccaacgactaacgtcaaatcgACGCAAGGG
GGTGGGGGATCAGAGGCATTGACGCTAAGAAGCTGATTGAATACTCATTT
TTCTAACAGATATGccagatattttttttattttgttaactACTCTCGCT
ACTCATAGTTTACACAAAATATTGGTGTCAAGACGAGACGAGACGAGACG
AGACGAGCCAAtcgattttctaaattttcaagtttGGTTGGTTcgtgtaa
aaaaaataatagattacgattttatcgattttcggtgGCTGATGCTGATG
CTGAGGGTAGGGGTGGGGGTCTTGGACGAGGGCCGAGTCTCAGTTATCTT
CTTTTTGGACTATGGAAGGCTTTTCCCGTCAAAAGGTGGactttttgaaa
tcaaatcaaaatgaaaaatcaaatctttCGAAAGGTTGAAGTTTTACGAA
ACAGAAGGTTTAAAAGTTCTGTATTCCGCCCTAAAcgatattattttttc
tttcgtCGTCGGCTTTCGACTGTAGAGCAGATGAGTCAGTTCAGTCTTGA
GCCACGGAAATATCAGTTTTATTTTATAATCTAAATCAAGATTGACAGCT
TCTCCATTTTCCGTGAAGATAGAGCGCGTATATTTTTGTAATCTCATTTT
TGCCCAGTGAGACATTCAGTTGATGCAATCTGACAGTTATCATGTGAGAT
GAGATGTAGCTTCAAAGATTTGTTAATTTGGAGTTCTATCAAGCTTTTGA
TTCCAAAcataattacacccctgtgtcacagacccactgggacccaagcc
ccactgggaaatttggccgaaatttgtccccggtgggaaaataccttgaA
ATTCCAGCCCCATTGGgatattaattttgatttcatccccattagaaatt
caaagtttaaaaattgcactccaaaaccatccccactggattttttaacc
ttgaaacaatagaatttctctccccattgagattttgaTAAgagttttta
tccccgctgaggaaaaaagttccaccggggctgtgagacaggggcgtATA
ATTCATTTTTGTATGAAATGTGTTAATCTTTGAAGTCATTTCTTCGTAGA
TAGTCCAAATTTCACAACTGTAAAATAAGACGGAGCTTTAGCGCAAAATC
ATTTCCAATTTTTGGAACACAGACCTACTTTGGAAGTCCTTGTGACTATT
TGTAACCATGGATCCCAAGTACCAGAAGTTATCGACTCTTTTCAGCTGCC
TTAGAACTGACCACAAGATGTTGCTTAACAGTAAGGTTTATGGTGACACA
TTCGATTTTTCGATGTTGATTACAAGTTCAACTGAAGCTTTAGAATCAGT
TGTGGCAGAAGAGTTGTTAAAAGTCCACATCTGTCAGACTCTATTCGTTT
TTGTTTTGGAGTAatttcagtaatttctgaaGTTTGCAAAGTAATGTAAA
GTTGAAGATCCACATCTCTTTGAAATCTCAATATTATTCACTGTTCGTCT
TTATGTGAAGTCAACTCAATTTCTCTTAATCTTAATCTTCATAATGATTT
TCGAATAACGACCTTGAATCCCGAATAACAgggaaaaatttatattttat
acataggaaatgttgaaaattcaaattaaagGCAGTGGGTACCGTGAGTA
TCAGATTGTATGAATCTTATATAATGTAACGACATTTTGCGATTTTAATC
AGCGAGAACCAGAACAAGAGTGACCATGGTTGCCATCCCAGATCTTGGAT
GAAGGCCAGTCAATCGAATCACAAGAAACAAGGGCAAAAAAGCATAGTAC
AGAGTAACATCTCAGAATATAGCATGCAGACCTCTCTACTATTACGAGTC
AAATAAACTACAAGTGCCTAAtaaaaatcccccccccccccgctggTTAA
TTTTTCGAGTGTGATTGAGACGTAAAAGTCTTACCGTAGCTCTTCCCACA
GGTTAAATTTTAGAGAAAGCTAATCTGTAGTGTTCGCGGTATTTATTGAT
TGCATCTTTTAATGCTATTGctttgagccaaaaaaatcAGACCAGATTCT
AAAAATCGCAGTGTTATTTTCTAATCGGAAAGAGAGTTATGGGTATTTCT
GAAACCATGCTCGCACGTGACGGTTCTGTTACGCTCACTGActtttatat
accctggacgaATTTTCTCAATcctggccaagcaaaatctttgatcggag
ttttttgtaagtggtaccctaatggtagcacttctcaatagcggtgaaaa
tgAATCGAGAGCGCTAGCtctacttttcctcgaatactttttatgatgaa
gcgccgcgttagacgttaatttttaacattgtaatggcttcttctcgggt
accaattctaaaaaactccaaacaaagatggcggatataatatagctttg
tccagggtatataaaggtcagtggtttcgctacgaaacgaaatgaagcca
ttctattagttagaagtgacgtaaaacttgaatgtAAGCAATAGAATATG
GCTTCAAACAAAGACGGCGAAACGGAATCGTAACGTCTGAACAATCTGAG
TATCTGCAAAATTAGTAAACGAGAACGTTGGCGATTTTTGATAGGTTGTT
TgtaaagtctgttccaaaaaatttgacactACGCACTATTTTAAATATCA
CAGGGAAAAAAACATAACTAAAAGTAGTatttcgttggaaagataatttt
gagcagTTTGATGTAAACTTTGCAGATttttggtccagcgcgcagcagaa
tggacctttaaaaagcaactgattgaaaagattttgtctttgtcggggcc
tgtgcgcgcaataaattaacaagtccaggctaaaccaaccaccgatctag
aattttttgttttggaatgaattggtagtagagtcaaatttcccggttag
attattaaagggttgtttcaggtagggttagggctagggttggggatggg
agttaacccctggttagggttttagcccccgggtagagtttggagtaaat
accatgtttataaggaaATTTGAACTCCTGAATacagttgtgactcgatg
gccgagtggttaaggcgctggcgttctaatcataggtgctttgtatatag
tgTGTTCGAATCCGACCAtcggcaaaagtttcgaaatttcgggaaatgct
tcaaaaatttaaaaacttagcaatacaaagaaagtgtcaaagaatagaag
ctcagagtggaggatgggaaggaaagttttttgcgtcacttaaggaaccc
ggtacgaacgacattcggttattgccacgtcagctggaccttcacgccgc
tccggcttcttgttccttatcaaaaagctttaatattattcttataaaat
tttaaaccCGCTAAAAAGttgagatattttacaaatttccctttACTATA
ATTAATTTACGTTGCGAGGTTGTTGGTTTGATCCCAagtcgggtcatacc
aaagattctcgaAATGGTACCtggtgcctctctgcttgattgTCAGCAAC
TACAGAGGCGAATCGAGGGTAAGTAGAGAAATCCAGAGAAAGGAATGGAG
CACTGAAATACCTTCGGTTGGGCTTCGACTGtagtcgcaaacttacttat
gTATCTCGTTTTCTGGAAACTAAATACTCGTCGAAAAACGAGTTGATTGA
TTCAAAAACAATATGGGTGTTTTAACAGGCTTAACACTCGAAACTGGAAA
AAAAATGATGGAAACCATTTTAAGTATATTCCTCTTTTTATGGATAAACG
TAGAAGATTAAATATGTTTTAGTACCTATACAAGTATTATATACAATTGT
CACACGAAATgcaacaaaaaaatacaaatgaaaacaaattttcgattttg
aacTTAAAAATATTAACTTCTAAATATATACATTTTAGATATGTAGGTTA
CAATAAAAACGAACGATGCAAGGTGAATATACCTGCCGGTATGTCGAAAA
ACAGAACAATATGGAGAATTTCCTCTCTGCATTTCaatttgtcaatatat
tttaaggaagttaaaaagaaaattactcGCGATCGTAGATAAAGTAATGA
CTATAATTCTTAGAGGTAATAATAGAAGTAAATTCGTAAGATTTTAATCT
CACGCCCTACAAGTTTTTCAACTCACCAAAGTTTACCCTTCAGAATCAGA
GAGTAGTATATTAGAATTATTggaattgaaataaaatctacGTGCATTAT
ACATTAACGCCTTTATCTAAATCTTCACGTTCAATTAAAGTTTGTTTCTC
TGGAGATTCATTCGTGGTCTCCTTTTTGCCATCACCGTCTAATAGATTTT
CAGAATGTCTTCTCGAAGCTGTCTCGACCATACTGTTGCTTGACCGATCG
TTTATCACGAAAGACATACTCGTTAATTCACTCTCGCGTCTAATAAAAGA
CTGCGTCagttttttacataattttgatCTTGAAAGTAGCATTAATGAAC
TCTTCCTCAAGGATCGAGTGAACATTAAATAAGTCAATGGATTTAAACAT
GAAATTACGAACGGTACGAAAGGGATTAACCAATTTTGAAAACCGGTAAT
ATCCTTGCCAGCTACAATTTCATAAGTATTACACGTCATGAAATAACCCC
ATCCGCAAACAAAAGGAACTGTCATTATTGCCACGTTAAAAGCGATCTTG
ATTTCTCGAAACCTTGCTGGTCTCATTGATGCAACTTTTTCCAGATTCTC
TTGATCCATTGTGGATATAACGACAATAACTTTGCtgattttcttttcca
ttttcatATTCTTTAACGCTGATACCAGAATAAAACCATAGGAGACAAGT
ACTAATATACAAGGGATGAAAAAGCTCAATGTAGCAGCGATGAAGAAAAA
CACTGAATTGTAGACGTCGCTGACAACCGGTATCCGTAATAAACCCATTA
CGAGGAGCACCAAACAATAAACCCAGATTCCAATAATAGTACGGTTTGCT
GTCCGATCATTAAGGTACCTTGGATATCTCAAAGGCATTGATACAGCTAT
GCCTCTTTCCATAGTTACTGCTGTTACATGTNCATAGATATGACAACGAT
AACTTTGCtgattttcttttccattttcatATTCTTTAACGCGGATACCA
GTATAAAACCGTAAGAGACAAGCACTAATATACAAGGGATGAAAAAGCTC
AATGTAGCAGCGATGAAGAAAAACACTGAATTGTAGACGTCGCTGACAAT
CGGTATTCGTAATAAACCCATGACGAGGAGCACCAAACAATAAATCCAGA
TTCCAACAATGGTACGATTCGCTGTTCGTTCATTAAGGTACCTTGGATAT
CTCAAAGGCATTGATACAGCTATGCCTCTTTCCATAGTCACTGCTGTTAC
ATGTAGCAACGAAGCTGAACCAATAACGACATCGATTGTTGGAAAGAAAA
AGCTTTGAACTCGTGGGCTCGCCTCTGACATTGCACCAGACGTATACATG
GTCACAAATAGTAGCATCTGAAAGATAACCAGAAGATCAGAAACAGCCAG
ATTGCAGATGAAGTAACCAGTGGTATTGCGAAGATGTTTGATTTTGTATA
CGGTCATAAGGATCAAAACGTTAGCAAAGAAGCCGATCGGTGAAAGCAAG
GATAGAATGATGAATGTCAATAGTCGCCATGCTGGATTTAAAACGGAAGA
ATTATTTGTTGAAGAATTTAAACAGATCTCTTGGTAGAGAGCTTCTTCTT
GTTGGTTTCGATTATGGTGCATATAATTACACACGTCACTAATCAATTGT
TCTGGGTGCGTCTCATTATTTATATTTACAGTCTTATTGAGGATCATAAA
GGGTATCGGGTCACAGCAATGATCGTAAAAGATTCTCTCCTCGAATGTCA
CCATAGATGCATTAATACTGTCAATTATACCACAAATATTTGGCAAGATG
ACATGAATCAAATCTGCAGACACTGTTCCGGAAGGTTGTACCATTTTCAT
GATATCATTACATGAAGTCACGTTCATTTTAACAATAGTTGGGATGTAAG
GCTTCCCAATGCCCTTCTTGTTCTACTGATGTCGATCGAATGAATGTACT
CGCAGTAGATCAcgtctttttgttcaatttgtcTTATCTTCGCTCACACC
ACTCAACTTTTCGTTAACGTTGATAGTGGACTTTCTGTTGTCTTTGATAT
CTGATGTCCCTTTGAAGATGACTATCTATATGCCTTGCTTTTCTGTTTTT
CCTACAACGAAAGTACGATAACGGTACATtagagaaaaaggaaaaagtta
GGGAGCTAGATAACAAGTATAAAATTCATCCTATTTCGTCTCTTTGAAGG
CTGATCGTGTATCTTTCTGTATTGTAGGTATGGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00001844-exon-sc0000012-1491911889:842718..842756 | TCONS_00001844-exon-sc0000012-1491911889:842718..842756 | Clytia hemisphaerica | exon |
| TCONS_00001844-exon-sc0000012-1510915933:842718..842756 | TCONS_00001844-exon-sc0000012-1510915933:842718..842756 | Clytia hemisphaerica | exon |
| TCONS_00001844-exon-sc0000012-1575043694:842718..842756 | TCONS_00001844-exon-sc0000012-1575043694:842718..842756 | Clytia hemisphaerica | exon |
| TCONS_00001844-exon-sc0000012-1491911889:851598..852552 | TCONS_00001844-exon-sc0000012-1491911889:851598..852552 | Clytia hemisphaerica | exon |
| TCONS_00001844-exon-sc0000012-1510915933:851598..852552 | TCONS_00001844-exon-sc0000012-1510915933:851598..852552 | Clytia hemisphaerica | exon |
| TCONS_00001844-exon-sc0000012-1575043694:851598..852552 | TCONS_00001844-exon-sc0000012-1575043694:851598..852552 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000012 | supercontig | sc0000012:842718..852552 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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