TCONS_00001845 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001845
Unique NameTCONS_00001845
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1543

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001845 ID=TCONS_00001845|Name=TCONS_00001845|organism=Clytia hemisphaerica|type=transcript|length=1543bp
CATTAAGGTACCTTGGATATCTCAAAGGCATTGATACAGCTATGCCTCTT
TCCATAGTTACTGCTGTTACATGTNCATAGATATGACAACGATAACTTTG
CtgattttcttttccattttcatATTCTTTAACGCGGATACCAGTATAAA
ACCGTAAGAGACAAGCACTAATATACAAGGGATGAAAAAGCTCAATGTAG
CAGCGATGAAGAAAAACACTGAATTGTAGACGTCGCTGACAATCGGTATT
CGTAATAAACCCATGACGAGGAGCACCAAACAATAAATCCAGATTCCAAC
AATGGTACGATTCGCTGTTCGTTCATTAAGGTACCTTGGATATCTCAAAG
GCATTGATACAGCTATGCCTCTTTCCATAGTCACTGCTGTTACATGTAGC
AACGAAGCTGAACCAATAACGACATCGATTGTTGGAAAGAAAAAGCTTTG
AACTCGTGGGCTCGCCTCTGACATTGCACCAGACGTATACATGGTCACAA
ATAGTAGCATCTGAAAGATAACCAGAAGATCAGAAACAGCCAGATTGCAG
ATGAAGTAACCAGTGGTATTGCGAAGATGTTTGATTTTGTATACGGTCAT
AAGGATCAAAACGTTAGCAAAGAAGCCGATCGGTGAAAGCAAGGATAGAA
TGATGAATGTCAATAGTCGCCATGCTGGATTTAAAACGGAAGAATTATTT
GTTGAAGAATTTAAACAGATCTCTTGGTAGAGAGCTTCTTCTTGTTGGTT
TCGATTATGGTGCATATAATTACACACGTCACTAATCAATTGTTCTGGGT
GCGTCTCATTATTTATATTTACAGTCTTATTGAGGATCATAAAGGGTATC
GGGTCACAGCAATGATCGTAAAAGATTCTCTCCTCGAATGTCACCATAGA
TGCATTAATACTGTCAATTATACCACAAATATTTGGCAAGATGACATGAA
TCAAATCTGCAGACACTGTTCCGGAAGGTTGTACCATTTTCATGATATCA
TTACATGAAGTCACGTTCATTTTAACAATAGTTGGGATGTAAGGCTTCCC
AATGCCCTTCTTGTTCTACTGATGTCGATCGAATGAATGTACTCGCAGTA
GATCAcgtctttttgttcaatttgtcTTATCTTCGCTCACACCACTCAAC
TTTTCGTTAACGTTGATAGTGGACTTTCTGTTGTCTTTGATATCTGATGT
CCCTTTGAAGATGACTATCTATATGCCTTGCTTTTCTGTTTTTCCTACAA
CGAAAGTACGATAACGGTACATtagagaaaaaggaaaaagttaGGGAGCT
AGATAACAAGTATAAAATTCATCCTATTTCGTCTCTTTGAAGGCTGATCG
TGTATCTTTCTGTATTGTAGGTATGGATTAGTCAATTAACCGTCCCACAG
GGAATATATGCGACCATTTTATattgatttggaaaaaatatactGAAGTG
TCGTTACTATACAGCCAAGCTGTTCTGATGATGCTTTTCCAGTAAGTATT
TTCCATACCCTCAGAATTAAGATTTAAGATTGTTGCGGTCATT
Run BLAST on NCBI

transcript from alignment at sc0000012:851175..852717+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001845 ID=TCONS_00001845|Name=TCONS_00001845|organism=Clytia hemisphaerica|type=transcript|length=1543bp|location=Sequence derived from alignment at sc0000012:851175..852717+ (Clytia hemisphaerica)
CATTAAGGTACCTTGGATATCTCAAAGGCATTGATACAGCTATGCCTCTT TCCATAGTTACTGCTGTTACATGTNCATAGATATGACAACGATAACTTTG CtgattttcttttccattttcatATTCTTTAACGCGGATACCAGTATAAA ACCGTAAGAGACAAGCACTAATATACAAGGGATGAAAAAGCTCAATGTAG CAGCGATGAAGAAAAACACTGAATTGTAGACGTCGCTGACAATCGGTATT CGTAATAAACCCATGACGAGGAGCACCAAACAATAAATCCAGATTCCAAC AATGGTACGATTCGCTGTTCGTTCATTAAGGTACCTTGGATATCTCAAAG GCATTGATACAGCTATGCCTCTTTCCATAGTCACTGCTGTTACATGTAGC AACGAAGCTGAACCAATAACGACATCGATTGTTGGAAAGAAAAAGCTTTG AACTCGTGGGCTCGCCTCTGACATTGCACCAGACGTATACATGGTCACAA ATAGTAGCATCTGAAAGATAACCAGAAGATCAGAAACAGCCAGATTGCAG ATGAAGTAACCAGTGGTATTGCGAAGATGTTTGATTTTGTATACGGTCAT AAGGATCAAAACGTTAGCAAAGAAGCCGATCGGTGAAAGCAAGGATAGAA TGATGAATGTCAATAGTCGCCATGCTGGATTTAAAACGGAAGAATTATTT GTTGAAGAATTTAAACAGATCTCTTGGTAGAGAGCTTCTTCTTGTTGGTT TCGATTATGGTGCATATAATTACACACGTCACTAATCAATTGTTCTGGGT GCGTCTCATTATTTATATTTACAGTCTTATTGAGGATCATAAAGGGTATC GGGTCACAGCAATGATCGTAAAAGATTCTCTCCTCGAATGTCACCATAGA TGCATTAATACTGTCAATTATACCACAAATATTTGGCAAGATGACATGAA TCAAATCTGCAGACACTGTTCCGGAAGGTTGTACCATTTTCATGATATCA TTACATGAAGTCACGTTCATTTTAACAATAGTTGGGATGTAAGGCTTCCC AATGCCCTTCTTGTTCTACTGATGTCGATCGAATGAATGTACTCGCAGTA GATCAcgtctttttgttcaatttgtcTTATCTTCGCTCACACCACTCAAC TTTTCGTTAACGTTGATAGTGGACTTTCTGTTGTCTTTGATATCTGATGT CCCTTTGAAGATGACTATCTATATGCCTTGCTTTTCTGTTTTTCCTACAA CGAAAGTACGATAACGGTACATtagagaaaaaggaaaaagttaGGGAGCT AGATAACAAGTATAAAATTCATCCTATTTCGTCTCTTTGAAGGCTGATCG TGTATCTTTCTGTATTGTAGGTATGGATTAGTCAATTAACCGTCCCACAG GGAATATATGCGACCATTTTATattgatttggaaaaaatatactGAAGTG TCGTTACTATACAGCCAAGCTGTTCTGATGATGCTTTTCCAGTAAGTATT TTCCATACCCTCAGAATTAAGATTTAAGATTGTTGCGGTCATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000975XLOC_000975Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001845-exon-sc0000012-1491911889:851175..852717TCONS_00001845-exon-sc0000012-1491911889:851175..852717Clytia hemisphaericaexon
TCONS_00001845-exon-sc0000012-1510915933:851175..852717TCONS_00001845-exon-sc0000012-1510915933:851175..852717Clytia hemisphaericaexon
TCONS_00001845-exon-sc0000012-1575043694:851175..852717TCONS_00001845-exon-sc0000012-1575043694:851175..852717Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000012supercontigsc0000012:851175..852717 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0.202877 0 0.432731 0.488179 0.339693 0.324512 0.214374 0.316134 0 0.459556 0.37397 0.803613 0.257801 0.144065 0 0 0.607132 0 0 0.235574 0 0.186779 0 0 0 0 0 0.0730774
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001845 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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