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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001845 ID=TCONS_00001845|Name=TCONS_00001845|organism=Clytia hemisphaerica|type=transcript|length=1543bp CATTAAGGTACCTTGGATATCTCAAAGGCATTGATACAGCTATGCCTCTT TCCATAGTTACTGCTGTTACATGTNCATAGATATGACAACGATAACTTTG CtgattttcttttccattttcatATTCTTTAACGCGGATACCAGTATAAA ACCGTAAGAGACAAGCACTAATATACAAGGGATGAAAAAGCTCAATGTAG CAGCGATGAAGAAAAACACTGAATTGTAGACGTCGCTGACAATCGGTATT CGTAATAAACCCATGACGAGGAGCACCAAACAATAAATCCAGATTCCAAC AATGGTACGATTCGCTGTTCGTTCATTAAGGTACCTTGGATATCTCAAAG GCATTGATACAGCTATGCCTCTTTCCATAGTCACTGCTGTTACATGTAGC AACGAAGCTGAACCAATAACGACATCGATTGTTGGAAAGAAAAAGCTTTG AACTCGTGGGCTCGCCTCTGACATTGCACCAGACGTATACATGGTCACAA ATAGTAGCATCTGAAAGATAACCAGAAGATCAGAAACAGCCAGATTGCAG ATGAAGTAACCAGTGGTATTGCGAAGATGTTTGATTTTGTATACGGTCAT AAGGATCAAAACGTTAGCAAAGAAGCCGATCGGTGAAAGCAAGGATAGAA TGATGAATGTCAATAGTCGCCATGCTGGATTTAAAACGGAAGAATTATTT GTTGAAGAATTTAAACAGATCTCTTGGTAGAGAGCTTCTTCTTGTTGGTT TCGATTATGGTGCATATAATTACACACGTCACTAATCAATTGTTCTGGGT GCGTCTCATTATTTATATTTACAGTCTTATTGAGGATCATAAAGGGTATC GGGTCACAGCAATGATCGTAAAAGATTCTCTCCTCGAATGTCACCATAGA TGCATTAATACTGTCAATTATACCACAAATATTTGGCAAGATGACATGAA TCAAATCTGCAGACACTGTTCCGGAAGGTTGTACCATTTTCATGATATCA TTACATGAAGTCACGTTCATTTTAACAATAGTTGGGATGTAAGGCTTCCC AATGCCCTTCTTGTTCTACTGATGTCGATCGAATGAATGTACTCGCAGTA GATCAcgtctttttgttcaatttgtcTTATCTTCGCTCACACCACTCAAC TTTTCGTTAACGTTGATAGTGGACTTTCTGTTGTCTTTGATATCTGATGT CCCTTTGAAGATGACTATCTATATGCCTTGCTTTTCTGTTTTTCCTACAA CGAAAGTACGATAACGGTACATtagagaaaaaggaaaaagttaGGGAGCT AGATAACAAGTATAAAATTCATCCTATTTCGTCTCTTTGAAGGCTGATCG TGTATCTTTCTGTATTGTAGGTATGGATTAGTCAATTAACCGTCCCACAG GGAATATATGCGACCATTTTATattgatttggaaaaaatatactGAAGTG TCGTTACTATACAGCCAAGCTGTTCTGATGATGCTTTTCCAGTAAGTATT TTCCATACCCTCAGAATTAAGATTTAAGATTGTTGCGGTCATT Run BLAST on NCBI transcript from alignment at sc0000012:851175..852717+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00001845 ID=TCONS_00001845|Name=TCONS_00001845|organism=Clytia hemisphaerica|type=transcript|length=1543bp|location=Sequence derived from alignment at sc0000012:851175..852717+ (Clytia hemisphaerica) CATTAAGGTACCTTGGATATCTCAAAGGCATTGATACAGCTATGCCTCTT
TCCATAGTTACTGCTGTTACATGTNCATAGATATGACAACGATAACTTTG
CtgattttcttttccattttcatATTCTTTAACGCGGATACCAGTATAAA
ACCGTAAGAGACAAGCACTAATATACAAGGGATGAAAAAGCTCAATGTAG
CAGCGATGAAGAAAAACACTGAATTGTAGACGTCGCTGACAATCGGTATT
CGTAATAAACCCATGACGAGGAGCACCAAACAATAAATCCAGATTCCAAC
AATGGTACGATTCGCTGTTCGTTCATTAAGGTACCTTGGATATCTCAAAG
GCATTGATACAGCTATGCCTCTTTCCATAGTCACTGCTGTTACATGTAGC
AACGAAGCTGAACCAATAACGACATCGATTGTTGGAAAGAAAAAGCTTTG
AACTCGTGGGCTCGCCTCTGACATTGCACCAGACGTATACATGGTCACAA
ATAGTAGCATCTGAAAGATAACCAGAAGATCAGAAACAGCCAGATTGCAG
ATGAAGTAACCAGTGGTATTGCGAAGATGTTTGATTTTGTATACGGTCAT
AAGGATCAAAACGTTAGCAAAGAAGCCGATCGGTGAAAGCAAGGATAGAA
TGATGAATGTCAATAGTCGCCATGCTGGATTTAAAACGGAAGAATTATTT
GTTGAAGAATTTAAACAGATCTCTTGGTAGAGAGCTTCTTCTTGTTGGTT
TCGATTATGGTGCATATAATTACACACGTCACTAATCAATTGTTCTGGGT
GCGTCTCATTATTTATATTTACAGTCTTATTGAGGATCATAAAGGGTATC
GGGTCACAGCAATGATCGTAAAAGATTCTCTCCTCGAATGTCACCATAGA
TGCATTAATACTGTCAATTATACCACAAATATTTGGCAAGATGACATGAA
TCAAATCTGCAGACACTGTTCCGGAAGGTTGTACCATTTTCATGATATCA
TTACATGAAGTCACGTTCATTTTAACAATAGTTGGGATGTAAGGCTTCCC
AATGCCCTTCTTGTTCTACTGATGTCGATCGAATGAATGTACTCGCAGTA
GATCAcgtctttttgttcaatttgtcTTATCTTCGCTCACACCACTCAAC
TTTTCGTTAACGTTGATAGTGGACTTTCTGTTGTCTTTGATATCTGATGT
CCCTTTGAAGATGACTATCTATATGCCTTGCTTTTCTGTTTTTCCTACAA
CGAAAGTACGATAACGGTACATtagagaaaaaggaaaaagttaGGGAGCT
AGATAACAAGTATAAAATTCATCCTATTTCGTCTCTTTGAAGGCTGATCG
TGTATCTTTCTGTATTGTAGGTATGGATTAGTCAATTAACCGTCCCACAG
GGAATATATGCGACCATTTTATattgatttggaaaaaatatactGAAGTG
TCGTTACTATACAGCCAAGCTGTTCTGATGATGCTTTTCCAGTAAGTATT
TTCCATACCCTCAGAATTAAGATTTAAGATTGTTGCGGTCATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00001845-exon-sc0000012-1491911889:851175..852717 | TCONS_00001845-exon-sc0000012-1491911889:851175..852717 | Clytia hemisphaerica | exon |
TCONS_00001845-exon-sc0000012-1510915933:851175..852717 | TCONS_00001845-exon-sc0000012-1510915933:851175..852717 | Clytia hemisphaerica | exon |
TCONS_00001845-exon-sc0000012-1575043694:851175..852717 | TCONS_00001845-exon-sc0000012-1575043694:851175..852717 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000012 | supercontig | sc0000012:851175..852717 + |
Blast
The following BLAST results are available for this feature:
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