TCONS_00001845 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00001845
Unique Name	TCONS_00001845
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1543

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000012:851175..852717+

transcript sequence

>TCONS_00001845 ID=TCONS_00001845|Name=TCONS_00001845|organism=Clytia hemisphaerica|type=transcript|length=1543bp
CATTAAGGTACCTTGGATATCTCAAAGGCATTGATACAGCTATGCCTCTT
TCCATAGTTACTGCTGTTACATGTNCATAGATATGACAACGATAACTTTG
CtgattttcttttccattttcatATTCTTTAACGCGGATACCAGTATAAA
ACCGTAAGAGACAAGCACTAATATACAAGGGATGAAAAAGCTCAATGTAG
CAGCGATGAAGAAAAACACTGAATTGTAGACGTCGCTGACAATCGGTATT
CGTAATAAACCCATGACGAGGAGCACCAAACAATAAATCCAGATTCCAAC
AATGGTACGATTCGCTGTTCGTTCATTAAGGTACCTTGGATATCTCAAAG
GCATTGATACAGCTATGCCTCTTTCCATAGTCACTGCTGTTACATGTAGC
AACGAAGCTGAACCAATAACGACATCGATTGTTGGAAAGAAAAAGCTTTG
AACTCGTGGGCTCGCCTCTGACATTGCACCAGACGTATACATGGTCACAA
ATAGTAGCATCTGAAAGATAACCAGAAGATCAGAAACAGCCAGATTGCAG
ATGAAGTAACCAGTGGTATTGCGAAGATGTTTGATTTTGTATACGGTCAT
AAGGATCAAAACGTTAGCAAAGAAGCCGATCGGTGAAAGCAAGGATAGAA
TGATGAATGTCAATAGTCGCCATGCTGGATTTAAAACGGAAGAATTATTT
GTTGAAGAATTTAAACAGATCTCTTGGTAGAGAGCTTCTTCTTGTTGGTT
TCGATTATGGTGCATATAATTACACACGTCACTAATCAATTGTTCTGGGT
GCGTCTCATTATTTATATTTACAGTCTTATTGAGGATCATAAAGGGTATC
GGGTCACAGCAATGATCGTAAAAGATTCTCTCCTCGAATGTCACCATAGA
TGCATTAATACTGTCAATTATACCACAAATATTTGGCAAGATGACATGAA
TCAAATCTGCAGACACTGTTCCGGAAGGTTGTACCATTTTCATGATATCA
TTACATGAAGTCACGTTCATTTTAACAATAGTTGGGATGTAAGGCTTCCC
AATGCCCTTCTTGTTCTACTGATGTCGATCGAATGAATGTACTCGCAGTA
GATCAcgtctttttgttcaatttgtcTTATCTTCGCTCACACCACTCAAC
TTTTCGTTAACGTTGATAGTGGACTTTCTGTTGTCTTTGATATCTGATGT
CCCTTTGAAGATGACTATCTATATGCCTTGCTTTTCTGTTTTTCCTACAA
CGAAAGTACGATAACGGTACATtagagaaaaaggaaaaagttaGGGAGCT
AGATAACAAGTATAAAATTCATCCTATTTCGTCTCTTTGAAGGCTGATCG
TGTATCTTTCTGTATTGTAGGTATGGATTAGTCAATTAACCGTCCCACAG
GGAATATATGCGACCATTTTATattgatttggaaaaaatatactGAAGTG
TCGTTACTATACAGCCAAGCTGTTCTGATGATGCTTTTCCAGTAAGTATT
TTCCATACCCTCAGAATTAAGATTTAAGATTGTTGCGGTCATT

Run BLAST on NCBI

transcript from alignment at sc0000012:851175..852717+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00001845 ID=TCONS_00001845|Name=TCONS_00001845|organism=Clytia hemisphaerica|type=transcript|length=1543bp|location=Sequence derived from alignment at sc0000012:851175..852717+ (Clytia hemisphaerica)
CATTAAGGTACCTTGGATATCTCAAAGGCATTGATACAGCTATGCCTCTT
TCCATAGTTACTGCTGTTACATGTNCATAGATATGACAACGATAACTTTG
CtgattttcttttccattttcatATTCTTTAACGCGGATACCAGTATAAA
ACCGTAAGAGACAAGCACTAATATACAAGGGATGAAAAAGCTCAATGTAG
CAGCGATGAAGAAAAACACTGAATTGTAGACGTCGCTGACAATCGGTATT
CGTAATAAACCCATGACGAGGAGCACCAAACAATAAATCCAGATTCCAAC
AATGGTACGATTCGCTGTTCGTTCATTAAGGTACCTTGGATATCTCAAAG
GCATTGATACAGCTATGCCTCTTTCCATAGTCACTGCTGTTACATGTAGC
AACGAAGCTGAACCAATAACGACATCGATTGTTGGAAAGAAAAAGCTTTG
AACTCGTGGGCTCGCCTCTGACATTGCACCAGACGTATACATGGTCACAA
ATAGTAGCATCTGAAAGATAACCAGAAGATCAGAAACAGCCAGATTGCAG
ATGAAGTAACCAGTGGTATTGCGAAGATGTTTGATTTTGTATACGGTCAT
AAGGATCAAAACGTTAGCAAAGAAGCCGATCGGTGAAAGCAAGGATAGAA
TGATGAATGTCAATAGTCGCCATGCTGGATTTAAAACGGAAGAATTATTT
GTTGAAGAATTTAAACAGATCTCTTGGTAGAGAGCTTCTTCTTGTTGGTT
TCGATTATGGTGCATATAATTACACACGTCACTAATCAATTGTTCTGGGT
GCGTCTCATTATTTATATTTACAGTCTTATTGAGGATCATAAAGGGTATC
GGGTCACAGCAATGATCGTAAAAGATTCTCTCCTCGAATGTCACCATAGA
TGCATTAATACTGTCAATTATACCACAAATATTTGGCAAGATGACATGAA
TCAAATCTGCAGACACTGTTCCGGAAGGTTGTACCATTTTCATGATATCA
TTACATGAAGTCACGTTCATTTTAACAATAGTTGGGATGTAAGGCTTCCC
AATGCCCTTCTTGTTCTACTGATGTCGATCGAATGAATGTACTCGCAGTA
GATCAcgtctttttgttcaatttgtcTTATCTTCGCTCACACCACTCAAC
TTTTCGTTAACGTTGATAGTGGACTTTCTGTTGTCTTTGATATCTGATGT
CCCTTTGAAGATGACTATCTATATGCCTTGCTTTTCTGTTTTTCCTACAA
CGAAAGTACGATAACGGTACATtagagaaaaaggaaaaagttaGGGAGCT
AGATAACAAGTATAAAATTCATCCTATTTCGTCTCTTTGAAGGCTGATCG
TGTATCTTTCTGTATTGTAGGTATGGATTAGTCAATTAACCGTCCCACAG
GGAATATATGCGACCATTTTATattgatttggaaaaaatatactGAAGTG
TCGTTACTATACAGCCAAGCTGTTCTGATGATGCTTTTCCAGTAAGTATT
TTCCATACCCTCAGAATTAAGATTTAAGATTGTTGCGGTCATT

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_000975	XLOC_000975	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00001845-exon-sc0000012-1491911889:851175..852717	TCONS_00001845-exon-sc0000012-1491911889:851175..852717	Clytia hemisphaerica	exon
TCONS_00001845-exon-sc0000012-1510915933:851175..852717	TCONS_00001845-exon-sc0000012-1510915933:851175..852717	Clytia hemisphaerica	exon
TCONS_00001845-exon-sc0000012-1575043694:851175..852717	TCONS_00001845-exon-sc0000012-1575043694:851175..852717	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000012	supercontig	sc0000012:851175..852717 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.202877	0	0.432731	0.488179	0.339693	0.324512	0.214374	0.316134	0	0.459556	0.37397	0.803613	0.257801	0.144065	0	0	0.607132	0	0	0.235574	0	0.186779	0	0	0	0	0	0.0730774

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00001845 vs. Swiss-Prot (Human)

BLAST of TCONS_00001845 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00001845 (transcript) - C. hemisphaerica