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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000993 ID=TCONS_00000993|Name=TCONS_00000993|organism=Clytia hemisphaerica|type=transcript|length=2327bpRun BLAST on NCBI protein sequence of TCONS_00000993-protein >TCONS_00000993-protein ID=TCONS_00000993-protein|Name=TCONS_00000993-protein|organism=Clytia hemisphaerica|type=polypeptide|length=698bp MAPKNKNDAGSTSWRSEDEKEKVQAVVIADSFNRKFTPITQETPRALLPLRun BLAST on NCBI transcript from alignment at sc0000007:393757..403713+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00000993 ID=TCONS_00000993|Name=TCONS_00000993|organism=Clytia hemisphaerica|type=transcript|length=9957bp|location=Sequence derived from alignment at sc0000007:393757..403713+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000007:393757..403713+ >TCONS_00000993 ID=TCONS_00000993|Name=TCONS_00000993|organism=Clytia hemisphaerica|type=CDS|length=44037bp|location=Sequence derived from alignment at sc0000007:393757..403713+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00000993 vs. Swiss-Prot (Human)
Match: EI2BE (Translation initiation factor eIF-2B subunit epsilon OS=Homo sapiens GN=EIF2B5 PE=1 SV=3) HSP 1 Score: 401.749 bits (1031), Expect = 1.055e-127 Identity = 240/689 (34.83%), Postives = 385/689 (55.88%), Query Frame = 3
Query: 177 EDEKEKVQAVVIADSFNRKFTPITQETPRALLPLGNKVLIDYTIEYLMNAGVNEIIVFCCAFGERIREYV-NNNW-KPDKNFTINCVLSSVTECISLGDALREIDREGLIRSDFLLVPGDLMCNIQIENILEHHKVQRKKEKNL-VMTMLYRELAPGHFSRCKEEDAFIAMDSDTHQIVQYQKSHACTSFDLSNNVWMNGRD-VDIHYNLSFTHVALCSPQVAPLFTDNFDYQTLDDFVKGVLINEDIMGDKINGAIIREGYSCRVNDLHMYNAISLDLLGRWTYPIT-----VDNT--SCPLGRNNVYIHNDVIVEKDCTLKTKVLVGKGTIIGEKTHITQSTIGANCKIGKNVTIKNSYIWDNTVIGDDCYIVQSIICENCQINRNVKM-VDAMISYNVCIDEGMELKPCTRLSLKKPXXXXXXXXXXXXXXXXENMKKLKIQDKKDYDIEIVGANGKGFLWPYDMEVEGNIP-------SLTGNDYXXXXXXXXXXXXXXXXXXXXXQPELSNLHQFHIEVVENLKSGYLEKIAADNIALEINASKFKFNISIPELCQTVAKALLEMCLKHDDTP--KTEQVKEFGKITKGLHPLLLKYFNTAETQTYAINSIEEHFLTSIEEVAYYVLPSIIHKLYDADVLDEAVILRWYACPHEISDDHIIIREENRTLLRKTPNLLKFVNWLQ 2180
E+ +QAV++ADSF+R+F PI+++ PR LLPL N LIDYT+E+L GV E VFCC +I+E++ + W +P + + S + SLGD LR++D + L+RSDFLLV GD++ NI I LE H+++RK EKN+ VMTM+++E +P H +RC E++ +A+DS T++++ +QK+ F +++ D V++ Y+L H+++CSPQVA LFTDNFDYQT DDFV+G+L+NE+I+G++I+ + + Y RV++LHMY+A+ D++ RW YP+T D+T SC R+N+Y +V + L+ VL+G GT+IG IT S IG C IG NV + +Y+W + I QS++C+N ++ V + ++++ V + + L + +SL PD++ DD + D + +K K++ K Y+ VGA GKG+LW L N E S+ ES + E+ P++ ++ F EV+ L+ G E I+ DN+ LEIN+ K+ +NIS+ E+ Q ++ +LE L+ D+P + + K P+ Y A A+ +IE+ FL E + ++ Y ++L E IL W++ + +D LRK L +F+ WL+
Sbjct: 37 EEPPPPLQAVLVADSFDRRFFPISKDQPRVLLPLANVALIDYTLEFLTATGVQETFVFCCWKAAQIKEHLLKSKWCRPTSLNVVRIITSELYR--SLGDVLRDVDAKALVRSDFLLVYGDVISNINITRALEEHRLRRKLEKNVSVMTMIFKESSPSHPTRCHEDNVVVAVDSTTNRVLHFQKTQGLRRFAFPLSLFQGSSDGVEVRYDLLDCHISICSPQVAQLFTDNFDYQTRDDFVRGLLVNEEILGNQIHMHVTAKEYGARVSNLHMYSAVCADVIRRWVYPLTPEANFTDSTTQSCTHSRHNIYRGPEVSLGHGSILEENVLLGSGTVIGSNCFITNSVIGPGCHIGDNVVLDQTYLWQGVRVAAGAQIHQSLLCDNAEVKERVTLKPRSVLTSQVVVGPNITLPEGSVISLHPPDAEEDEDDGEFSDDSGADQEKDKVK-MKGYNPAEVGAAGKGYLWKAAGMNMEEEEELQQNLWGLKINMEEESESESEQSMDSEEPDSRGGSPQMDDIKVFQNEVLGTLQRGKEENISCDNLVLEINSLKYAYNISLKEVMQVLSHVVLEFPLQQMDSPLDSSRYCALLLPLLKAWSPVFRNYIKRAADHLEALAAIEDFFLE--HEALGISMAKVLMAFYQLEILAEETILSWFS-QRDTTD--------KGQQLRKNQQLQRFIQWLK 711 The following BLAST results are available for this feature:
BLAST of TCONS_00000993 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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