TCONS_00073804 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00073804
Unique Name	TCONS_00073804
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	540

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at scaffold_98:93..7190-
coding sequence from alignment at scaffold_98:93..7190-

transcript sequence

>TCONS_00073804 ID=TCONS_00073804|Name=TCONS_00073804|organism=Clytia hemisphaerica|type=transcript|length=540bp
ttacaagtttgtttCATGTAACGAACATAAAAGCATAATGGCCGGCGAAG
AGTCAGGTGGTTACGAGTTTAAAACAAAAGGGAAATTACCAACACGTTGT
CAGTGTTTAATTTGCCAAGAGTTGTTAAGACAATGTGTTGAACTTCCCTG
CCGTCATCCATTTTGTAGCAGCTGTTTGCTGAGATGGGAAGATCAAAAAC
GAAAAGAGAGGAAAGGCCTTGAGCAAGAGAGACCCTTCAGGTGTATGCTT
TGTAatcaagaatatcaaattcaagAAaagaaaaagaacaCAGTCGTCGA
CAACATTATCACTGAAGATATAGAAGTTTTGTGCAAGCACCATGAGCAAG
GATGTCCGTGGACTGGTGCTATCAACGATTTTATGCAACACGCCAACACA
GATTGTCCATACGTCGAAATAACGTGTCATTTTATGGGATGTGACGTTCG
CTTCTTACGTAAAGCGAAACAACAACACGAACAAAATTGTCCGATGAAAG
AGGTGAACTGCGTGTACTGTCAAATGGCTTTTAAAGAAAG

Run BLAST on NCBI

protein sequence of TCONS_00073804-protein

>TCONS_00073804-protein ID=TCONS_00073804-protein|Name=TCONS_00073804-protein|organism=Clytia hemisphaerica|type=polypeptide|length=179bp
YKFVSCNEHKSIMAGEESGGYEFKTKGKLPTRCQCLICQELLRQCVELPC
RHPFCSSCLLRWEDQKRKERKGLEQERPFRCMLCNQEYQIQEKKKNTVVD
NIITEDIEVLCKHHEQGCPWTGAINDFMQHANTDCPYVEITCHFMGCDVR
FLRKAKQQHEQNCPMKEVNCVYCQMAFKE

Run BLAST on NCBI

transcript from alignment at scaffold_98:93..7190-

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00073804 ID=TCONS_00073804|Name=TCONS_00073804|organism=Clytia hemisphaerica|type=transcript|length=7098bp|location=Sequence derived from alignment at scaffold_98:93..7190- (Clytia hemisphaerica)
TTACAAGTTTGTTTCATGTAACGAACATAAAAGCATAATGGCCGGCGAAG
AGTCAGGTGGTTACGAGTTTAAAACAAAAGGGAAATTACCAACACGTTGT
CAGTGTTTAATTTGCCAAGAGTTGTTAAGACAATGTGTTGAACTTCCCTG
CCGTCATCCATTTTGTAGCAGCTGTTTGCTGAGATGGGAAGATCAAAAAC
GAAAAGAGAGGAAAGGCCTTGAGCAGTATGTTTTATCTTTTTTATTCATA
ACAATTGAAGGTTTCATGTCTTTAGGGGGGGGATGTTCTATATTAAGGAG
AGGGTGCCAAAATTATATTGACTGGTTAGGAGGGGGGCTTGAAATCTTTC
TGAGGATATCCAAAGCGTGGGAATTTTTTGACATTCTTATAAATACCCCC
CCCCCCCCCTACACGTTTTTTTTATAAGAATGGTGTTGTTTCATTTCATT
ATGGATATTCTTAACTTTTCGGCGAAAATCATCCAAGAATATTCTTACGG
TATTCTTAGGTTAAGATCGAAATTGGCAATCTACAGGTTAAAATGCATTA
GAAATGGCATTCTTAGCTTCATTTGGTAATTTCCATGATGGTGAAATTCT
TACCATATTCTTAATTTTTTGACCATTTTCATCATGGACATTCTTATAAA
GTGTATTCTTATAAAAAAAGTGTGCAGCACATACTTTCTGACCACTCCCT
AACAGTTTCCTAAAAATAAACGTTCCAATCTGCTTTTCCTTTTACAGAGA
GAGACCCTTCAGGTGTATGCTTTGTAATCAAGAATATCAAATTCAAGAAG
TAAGTCACTCTTTCGTATGGTTTCTTATTAGTTTCCATCAATGATTAAGT
AGTTTTTCCTAAGACCTTCCCAATTATCGTTATTTTGTATCGGAAATTTC
CCGCTCTGAATCCCTTACTCTAGCTAGCTCGCCTTAATTTCTTATTTTCA
GTGCAAAAATTATTTTGACACTTCTAAAACACCCACTGTGTCAGGGGCTT
GGTGGGACCCCCTACTCACTGAAAGATTTGGCTAAAACTTCGTCTCCAGT
GGGTAAAATTTTTTTTCATCCCCATTTGAAAAAAATAAATTCCCCGCTAG
ATTTTTTGACCTGGGAACAATGCAAAATTTCCATTTCCATCGGGATTTCA
GTAGAAACTTTTATCGCACTATTAAGATAAGAAGTTTCACCGGGACTGTT
AGACGGGGGGGGGTTTCAGGGGTCTTAAATACCGTCATACCGACAAAATT
TTGGGTCATATACCGTAATACCGTCGGTGAAGGAAGCCTAATACCGATAC
CGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNATGTATTGTATTGTAGTAGCAATATAAGTGAATACGGAG
AGACGACCATATCATTTAGTGCTGACGGAGAAAATTTTATCTAGACTCAA
TGCAGAAAAATAACGAAAATATTTGTTTAGATATCGTAAAGTTTAACTTA
TTTTGAATAACCTCAGCATGACAATAAGTCAATGGGAAATCCAAGATTGT
GCGAGCGAAGCGAGCAAGAAAATTTTACTGGATAAAATAGCGGAATAGAC
TCATCTTTTTTGAAAATTTTTCTACATGAAACTCATGAAGAAACTAAAAG
GTAAATAGTTTTATACCGAAATACCGTTTTTTATTGATAAAAATATCGAA
ATACCGACAAAAAAACAGGCAATTTACNNNNNNNNNNNNNNNNNNNNNNN
NNNNATAGAAAATGAAATACCGTAATCCCGTCGTTTTTTTCTCGTAATAC
CGATTTACCGGGGGTAAAAAGGCCCAATACCGTCATACCGTAAAAGTGAA
AACCCCCCCCCCCCTTAGACAGGGAAACATGAAGATCAATCTTTCAGATG
GATTTTTGTACTTGTTTGTTATTTCAACATATTAAAACATCATATAAGAT
TTATCTTACGGTAATGAAATTTAAAGAAATATAACTTTTATTGCATCTGC
TTTATTTAACAGAAGAAAAAGAACACAGTCGTCGACAACATTATCACTGA
AGATATAGAAGTTTTGTGCAAGCACCATGAGCAAGGATGTCCGTGGACTG
GTGCTATCAACGATTTTATGGTATATGGTTCCAATGTTTTGATTTAATTC
CTTGGAATATTTTGACAGACTTAAAAAATTTAGGGAAACTGAACATATGC
TTTTTTCACATACATGTAAAGTCTTACTTAATACCTTATGGTCTGGGAAT
TTACCCAACATCACATAGATTTTTTATCGTTTGGGGAAATTCCCAAAAGA
CANGAATTTACCCAACATCACATAGATTTTTTATTGTTTGGGGAAATTCC
CAAAAGACAGCCTTTCGAACAATTTTCCGTAAGGTCTTAAAGGGACATTA
CAGTAGTAACAAGAATCGCAAAATTGCGACTAAATATTTCCTTAAAAATG
AAGGTCATTATTGACATATATAAAAAGGGATAATTAGCCTTAGTAAAAGA
AAGCAAGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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ATATATTTTCTTCGTTTTATGTAATCAAATCCTTTTTCAACAGCAACACG
CCAACACAGATTGTCCATACGTCGAAATAACGTGTCATTTTATGGGATGT
GACGTTCGCTTCTTACGTAAAGCGAAACAACAACACGAACAAAATTGTCC
GATGAAAGAGGTGAACTGCGTGTACTGTCAAATGGCTTTTAAAGAAAG

Coding sequence (CDS) from alignment at scaffold_98:93..7190-

>TCONS_00073804 ID=TCONS_00073804|Name=TCONS_00073804|organism=Clytia hemisphaerica|type=CDS|length=2148bp|location=Sequence derived from alignment at scaffold_98:93..7190- (Clytia hemisphaerica)
CAACACGCCAACACAGATTGTCCATACGTCGAAATAACGTGTCATTTTAT
GGGATGTGACGTTCGCTTCTTACGTAAAGCGAAACAACAACACGAACAAA
ATTGTCCGATGAAAGAGGTGAACTGCGTGTACTGTCAAATGGCTTTTAAA
GAAAAGAAAAAGAACACAGTCGTCGACAACATTATCACTGAAGATATAGA
AGTTTTGTGCAAGCACCATGAGCAAGGATGTCCGTGGACTGGTGCTATCA
ACGATTTTATGAGAGAGACCCTTCAGGTGTATGCTTTGTAATCAAGAATA
TCAAATTCAAGAATACAAGTTTGTTTCATGTAACGAACATAAAAGCATAA
TGGCCGGCGAAGAGTCAGGTGGTTACGAGTTTAAAACAAAAGGGAAATTA
CCAACACGTTGTCAGTGTTTAATTTGCCAAGAGTTGTTAAGACAATGTGT
TGAACTTCCCTGCCGTCATCCATTTTGTAGCAGCTGTTTGCTGAGATGGG
AAGATCAAAAACGAAAAGAGAGGAAAGGCCTTGAGCACAACACGCCAACA
CAGATTGTCCATACGTCGAAATAACGTGTCATTTTATGGGATGTGACGTT
CGCTTCTTACGTAAAGCGAAACAACAACACGAACAAAATTGTCCGATGAA
AGAGGTGAACTGCGTGTACTGTCAAATGGCTTTTAAAGAAAAGAAAAAGA
ACACAGTCGTCGACAACATTATCACTGAAGATATAGAAGTTTTGTGCAAG
CACCATGAGCAAGGATGTCCGTGGACTGGTGCTATCAACGATTTTATGAG
AGAGACCCTTCAGGTGTATGCTTTGTAATCAAGAATATCAAATTCAAGAA
TACAAGTTTGTTTCATGTAACGAACATAAAAGCATAATGGCCGGCGAAGA
GTCAGGTGGTTACGAGTTTAAAACAAAAGGGAAATTACCAACACGTTGTC
AGTGTTTAATTTGCCAAGAGTTGTTAAGACAATGTGTTGAACTTCCCTGC
CGTCATCCATTTTGTAGCAGCTGTTTGCTGAGATGGGAAGATCAAAAACG
AAAAGAGAGGAAAGGCCTTGAGCACAACACGCCAACACAGATTGTCCATA
CGTCGAAATAACGTGTCATTTTATGGGATGTGACGTTCGCTTCTTACGTA
AAGCGAAACAACAACACGAACAAAATTGTCCGATGAAAGAGGTGAACTGC
GTGTACTGTCAAATGGCTTTTAAAGAAAAGAAAAAGAACACAGTCGTCGA
CAACATTATCACTGAAGATATAGAAGTTTTGTGCAAGCACCATGAGCAAG
GATGTCCGTGGACTGGTGCTATCAACGATTTTATGAGAGAGACCCTTCAG
GTGTATGCTTTGTAATCAAGAATATCAAATTCAAGAATACAAGTTTGTTT
CATGTAACGAACATAAAAGCATAATGGCCGGCGAAGAGTCAGGTGGTTAC
GAGTTTAAAACAAAAGGGAAATTACCAACACGTTGTCAGTGTTTAATTTG
CCAAGAGTTGTTAAGACAATGTGTTGAACTTCCCTGCCGTCATCCATTTT
GTAGCAGCTGTTTGCTGAGATGGGAAGATCAAAAACGAAAAGAGAGGAAA
GGCCTTGAGCACAACACGCCAACACAGATTGTCCATACGTCGAAATAACG
TGTCATTTTATGGGATGTGACGTTCGCTTCTTACGTAAAGCGAAACAACA
ACACGAACAAAATTGTCCGATGAAAGAGGTGAACTGCGTGTACTGTCAAA
TGGCTTTTAAAGAAAAGAAAAAGAACACAGTCGTCGACAACATTATCACT
GAAGATATAGAAGTTTTGTGCAAGCACCATGAGCAAGGATGTCCGTGGAC
TGGTGCTATCAACGATTTTATGAGAGAGACCCTTCAGGTGTATGCTTTGT
AATCAAGAATATCAAATTCAAGAATACAAGTTTGTTTCATGTAACGAACA
TAAAAGCATAATGGCCGGCGAAGAGTCAGGTGGTTACGAGTTTAAAACAA
AAGGGAAATTACCAACACGTTGTCAGTGTTTAATTTGCCAAGAGTTGTTA
AGACAATGTGTTGAACTTCCCTGCCGTCATCCATTTTGTAGCAGCTGTTT
GCTGAGATGGGAAGATCAAAAACGAAAAGAGAGGAAAGGCCTTGAGCA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_045841	XLOC_045841	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00073804-exon-scaffold_98-1575043694:6966..7190	TCONS_00073804-exon-scaffold_98-1575043694:6966..7190	Clytia hemisphaerica	exon
TCONS_00073804-exon-scaffold_98-1575043694:6392..6443	TCONS_00073804-exon-scaffold_98-1575043694:6392..6443	Clytia hemisphaerica	exon
TCONS_00073804-exon-scaffold_98-1575043694:3571..3678	TCONS_00073804-exon-scaffold_98-1575043694:3571..3678	Clytia hemisphaerica	exon
TCONS_00073804-exon-scaffold_98-1575043694:93..247	TCONS_00073804-exon-scaffold_98-1575043694:93..247	Clytia hemisphaerica	exon
TCONS_00073804-exon-scaffold_98-1510915933:6966..7190	TCONS_00073804-exon-scaffold_98-1510915933:6966..7190	Clytia hemisphaerica	exon
TCONS_00073804-exon-scaffold_98-1510915933:6392..6443	TCONS_00073804-exon-scaffold_98-1510915933:6392..6443	Clytia hemisphaerica	exon
TCONS_00073804-exon-scaffold_98-1510915933:3571..3678	TCONS_00073804-exon-scaffold_98-1510915933:3571..3678	Clytia hemisphaerica	exon
TCONS_00073804-exon-scaffold_98-1510915933:93..247	TCONS_00073804-exon-scaffold_98-1510915933:93..247	Clytia hemisphaerica	exon
TCONS_00073804-exon-scaffold_98-1491911889:6966..7190	TCONS_00073804-exon-scaffold_98-1491911889:6966..7190	Clytia hemisphaerica	exon
TCONS_00073804-exon-scaffold_98-1491911889:6392..6443	TCONS_00073804-exon-scaffold_98-1491911889:6392..6443	Clytia hemisphaerica	exon
TCONS_00073804-exon-scaffold_98-1491911889:3571..3678	TCONS_00073804-exon-scaffold_98-1491911889:3571..3678	Clytia hemisphaerica	exon
TCONS_00073804-exon-scaffold_98-1491911889:93..247	TCONS_00073804-exon-scaffold_98-1491911889:93..247	Clytia hemisphaerica	exon

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00073804-protein	TCONS_00073804-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_98	supercontig	scaffold_98:93..7190 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.17867	0.776882	1.13737	0.793855	3.07802	1.69692	3.93928	3.01369	2.55492	2.59508	1.39615	2.16439	5.9055	5.95885	1.75335	2.12774	1.97785	2.42081	11.6449	11.861	1.39856	1.46237	2.46768	2.17855	3.93897	6.05286	0.869063	1.61499	2.43942	1.56535

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR001841	Znf_RING
IPR013083	Znf_RING/FYVE/PHD
IPR018957	Znf_C3HC4_RING-type
IPR017907	Znf_RING_CS
IPR001293	Znf_TRAF
IPR008974	TRAF-like

Vocabulary: **Molecular Function**
Term	Definition
GO:0046872	metal ion binding
GO:0008270	zinc ion binding
GO:0005515	protein binding

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00073804 vs. Swiss-Prot (Human)

BLAST of TCONS_00073804 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00073804 (transcript) - C. hemisphaerica