TCONS_00073804-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00073804-protein
Unique NameTCONS_00073804-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length179

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00073804-protein ID=TCONS_00073804-protein|Name=TCONS_00073804-protein|organism=Clytia hemisphaerica|type=polypeptide|length=179bp
YKFVSCNEHKSIMAGEESGGYEFKTKGKLPTRCQCLICQELLRQCVELPC
RHPFCSSCLLRWEDQKRKERKGLEQERPFRCMLCNQEYQIQEKKKNTVVD
NIITEDIEVLCKHHEQGCPWTGAINDFMQHANTDCPYVEITCHFMGCDVR
FLRKAKQQHEQNCPMKEVNCVYCQMAFKE
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_045841XLOC_045841Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00073804TCONS_00073804Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
IPR018957Znf_C3HC4_RING-type
IPR017907Znf_RING_CS
IPR001293Znf_TRAF
IPR008974TRAF-like
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
GO:0008270zinc ion binding
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046872 metal ion binding
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 35..84
e-value: 6.5E-6
score: 35.6
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 35..85
score: 10.453
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 103..148
e-value: 2.3E-11
score: 43.2
coord: 149..178
e-value: 3.9E-4
score: 20.1
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 17..102
e-value: 7.4E-13
score: 47.3
IPR018957Zinc finger, C3HC4 RING-typePFAMPF00097zf-C3HC4coord: 35..84
e-value: 4.6E-6
score: 26.3
IPR017907Zinc finger, RING-type, conserved sitePROSITEPS00518ZF_RING_1coord: 50..59
IPR001293Zinc finger, TRAF-typePROSITEPS50145ZF_TRAFcoord: 130..173
score: 10.234
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 28..104
IPR008974TRAF-likeSUPERFAMILY49599TRAF domain-likecoord: 107..175

Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073804-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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