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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073541 ID=TCONS_00073541|Name=TCONS_00073541|organism=Clytia hemisphaerica|type=transcript|length=813bp
AGAACGGCCATTCTTGGTGTACCGAACAAAGTTTGACATCCGACAATGGT
TTCTTGTCACCGATTGGAATCCTTTGGTCATCTGGTTTTACCAAGACTGT
TATGTCAGATTTTGTTCACAAGAATTCACTTTGGACAAGTTCGATCCGCA
AGTTCATTTATCAAACAATTCCATACAAAAGCATTACCGCAATGGTATTC
GATCTGACAAGCTTCCTGATTCTAATATGTGGTCTAGTGATGAGTTCAAA
ACATATCTTCAAACTATAGgaAAAGATACATCTTGGGACAGTAAGATCTA
CCCTGGAATGAAATCCGCCATCATTGGAGCTTTACAATGCTGTCAAACGT
CTTTAGAATATCGACGAAACTCTTTCGAACTTTACGGAGCCGATTTCATG
TTGAGTGAGAATTTAGACCCTTGGTTGATTGAGATAAATTCGAGTCCTGC
TCTAGGGGCCAGTACGCCGGTCACGAAGGAATTATGCCGGAACGTTATTG
AGGACACGCTGAAAGTTGTTTTAGATCGGAGGGAGAATAAACAGGCGGAT
GTTGGTCGTTTTGAACTTGCTTTTCGGCAGCCGTACATTGCGCCACCCTC
CTACATGGGGTGTAATGTCTACATAGAAGGAAAACAGATTTCAAAACCGA
AAGTAGCTAAAGCTCCGGAACCGAAGATTGAGCTTAAGAAATCCGATGAT
AATTGTGATGATACcggaaaagaagaagaaagtaTGGTTGCCGTAAGAAC
AGacattaaaaaagtaaaatctaaaGAGACGTGTGAAAAtgtgaaaacca
aaacaacGAAATC Run BLAST on NCBI protein sequence of TCONS_00073541-protein >TCONS_00073541-protein ID=TCONS_00073541-protein|Name=TCONS_00073541-protein|organism=Clytia hemisphaerica|type=polypeptide|length=270bp
ERPFLVYRTKFDIRQWFLVTDWNPLVIWFYQDCYVRFCSQEFTLDKFDPQ
VHLSNNSIQKHYRNGIRSDKLPDSNMWSSDEFKTYLQTIGKDTSWDSKIY
PGMKSAIIGALQCCQTSLEYRRNSFELYGADFMLSENLDPWLIEINSSPA
LGASTPVTKELCRNVIEDTLKVVLDRRENKQADVGRFELAFRQPYIAPPS
YMGCNVYIEGKQISKPKVAKAPEPKIELKKSDDNCDDTGKEEESMVAVRT
DIKKVKSKETCENVKTKTTK Run BLAST on NCBI transcript from alignment at scaffold_94:261362..264141- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00073541 ID=TCONS_00073541|Name=TCONS_00073541|organism=Clytia hemisphaerica|type=transcript|length=2780bp|location=Sequence derived from alignment at scaffold_94:261362..264141- (Clytia hemisphaerica)
AGAACGGCCATTCTTGGTGTACCGAACAAAGTTTGACATCCGACAATGGT
TTCTTGTCACCGATTGGAATCCTTTGGTCATCTGGTTTTACCAAGACTGT
TATGTCAGGTTAGTAATCTTGTATGTTCTATTCACGAAATGTGCTCAATA
ACACATAATACAGTTGATGAGTTAAAGGTTTTGTTTTTAAATAAGAGTGA
TATCGTTCGCTTACTCGTCAATTTTAATTCACAAGCTTTTTGATATTGAA
TTGACACAGATGTGGAGCAAGATTGATCAGAAAGAGAAAAGGAAAACATT
TTTTCCTTATCAGCACTATATAACAATAGGCAAACAGTCTTCCTTGTAAA
TTCATTATCAGTTCCTTAAAAAGCCGACCGCGTCGCTAAGCTCTAGTTTA
GACGGCCGACTTTCTGCCCTGCCTATTCTAATTGTTAGAGTAGGCAGAAA
GTGGGCACAAAGTTGGCAGTTAAAATCTTCGCTTGGAAAAGGTTGAAAGA
AGACATTGCATTGACGTCAAAAGGGCTATGCATTGACTTTAGACAGCCCA
CTTTATGCCAACTTTAATTCACAATTAGAATAGGCAGGGCGAAAAGTGGG
CCGTCTAAACTAGAGCTAAGGGTTGATAGATGTGTTGGTGCATGTTTGTT
AAGATTTGTATTTTGCATTTTCCTATAACTGTTACAAAATGTTACACCCT
AACTGCTATGTTGATCTTTATCTCGAATTATTGTCCAAAATAACCCAATA
ATATTCGTAACCTGGAAACTTGATTTTCTCTGCTACGCCATAGAAATATA
TGTTATTAAGCGTAAAGTCTAAACTTGCGCCAACTGGGTACCGCACTTAG
CTCTAGTTTAGACGGCCGACTTTCTGCCCTGCCTATTCTAATTGTTAGAG
TAGGCAGAAAGAGGGCACAAAGTTGGTTGTTAAAATCTTTGCTTGGAAAG
GTTTGAAAGAAGACATTGCATTGACGTCAAAAGAGGGCTATGCATCACTT
TAGACAGCCCGCTCTACAGCCTGATTTAAAGTTGGGATAAAGTGGGTTGT
CTAAAGTCAATGCATTGCCCTCTTTTGACGTCAATCCAATGTCTTCTTTC
AATCTTTTCCAAGCAAATATTTTAACTGCCAACTTTGTGCCCACCTTCTA
CCTATTCTAACAGTTAGAATAGGCAGGGCAGTAAGACGGCCGTCTAAACT
AGAGCTTATCTTCCGTTGTTGTCTTAATTGCTCTGGTATGAATCATTTTT
AATACATGTATTTTTCCGAGCTGTAATTTCTATTTCCTTTTCATATCCCA
CAGATTTTGTTCACAAGAATTCACTTTGGACAAGTTCGATCCGCAAGTTC
ATTTATCAAACAATTCCATACAAAAGCATTACCGCAATGGTATTCGATCT
GACAAGCTTCCTGATTCTAATATGTGGTCTAGTGATGAGTTCAAAACATA
TCTTCAAACTATAGGTAGGTAGCGAATAAGATTTGTATGTATAAAATGGT
TTAGCTTAGTACCTTTTCTCCTCAGGTTTAGTTTATTTCTAGTAAGAAGG
CAAGGTGTCAACTAGTCAGTCACATAGCCATGCTCCGCATATTCAGACCT
AAGTTTGTATCCCAAATTTACTCGTTTTTCAATTATCTTTTGAATAAGCC
AAAAATCATTGATTTTCGAGCACTTTCGATTTAGGCTAAAACATAGATTC
TAGGCCTAAAATACAATGCCCAAAATGAGCAGTTTGGGCATCGATTTAGA
AAAATCGGTCGATGACCTGAGATTCTGTAAGGGTTAAGCTGCCGAAAACC
GAAAAAAAAAACAGAGATTGGAATCCCTTTCCGAGCGGAGCATGGCTTTG
TGACAGACTAAACTCGATTGTGGGTTTTTTACACAATTTTACACAAACTT
AAAAGGATACGTTCTATTTTTTTCAAACTAAAGGTAGATTGTAAATATCA
TTTGATATTTATTATACCAATGTTCATCGATAGCTTTTAAAAATGCCAAG
AAGATCTTCTCTCTATCAGCTTATAAAAATAGCTGGGTTTTCAACCTGAA
CTTTGTCAGGCATAATTTAACTTTTCGTTGATTGTTTTGCATCCTGGATG
TTTTCTTGAGCTCCACTGAGCTCCAATTCATTTAGATCGCTCAAGATTTT
GTTAATTTGTATAATTATAGACGTCAAACACTCGTAATCTATTATTGTAT
TGAAGAATAGCTGACTCAGCATTATTTTAATTTTAGGAAAAGATACATCT
TGGGACAGTAAGATCTACCCTGGAATGAAATCCGCCATCATTGGAGCTTT
ACAATGCTGTCAAACGTCTTTAGAATATCGACGAAACTCTTTCGAACTTT
ACGGAGCCGATTTCATGTTGAGTGAGAATTTAGACCCTTGGTTGATTGAG
ATAAATTCGAGTCCTGCTCTAGGGGCCAGTACGCCGGTCACGAAGGAATT
ATGCCGGAACGTTATTGAGGACACGCTGAAAGTTGTTTTAGATCGGAGGG
AGAATAAACAGGCGGATGTTGGTCGTTTTGAACTTGCTTTTCGGCAGCCG
TACATTGCGCCACCCTCCTACATGGGGTGTAATGTCTACATAGAAGGAAA
ACAGATTTCAAAACCGAAAGTAGCTAAAGCTCCGGAACCGAAGATTGAGC
TTAAGAAATCCGATGATAATTGTGATGATACCGGAAAAGAAGAAGAAAGT
ATGGTTGCCGTAAGAACAGACATTAAAAAAGTAAAATCTAAAGAGACGTG
TGAAAATGTGAAAACCAAAACAACGAAATC Coding sequence (CDS) from alignment at scaffold_94:261362..264141- >TCONS_00073541 ID=TCONS_00073541|Name=TCONS_00073541|organism=Clytia hemisphaerica|type=CDS|length=2430bp|location=Sequence derived from alignment at scaffold_94:261362..264141- (Clytia hemisphaerica)
GAAAAGATACATCTTGGGACAGTAAGATCTACCCTGGAATGAAATCCGCC
ATCATTGGAGCTTTACAATGCTGTCAAACGTCTTTAGAATATCGACGAAA
CTCTTTCGAACTTTACGGAGCCGATTTCATGTTGAGTGAGAATTTAGACC
CTTGGTTGATTGAGATAAATTCGAGTCCTGCTCTAGGGGCCAGTACGCCG
GTCACGAAGGAATTATGCCGGAACGTTATTGAGGACACGCTGAAAGTTGT
TTTAGATCGGAGGGAGAATAAACAGGCGGATGTTGGTCGTTTTGAACTTG
CTTTTCGGCAGCCGTACATTGCGCCACCCTCCTACATGGGGTGTAATGTC
TACATAGAAGGAAAACAGATTTCAAAACCGAAAGTAGCTAAAGCTCCGGA
ACCGAAGATTGAGCTTAAGAAATCCGATGATAATTGTGATGATACCGGAA
AAGAAGAAGAAAGTATGGTTGCCGTAAGAACAGACATTAAAAAAGTAAAA
TCTAAAGAGACGTGTGAAAATGTGAAAACCAAAACAACGAAAATTTTGTT
CACAAGAATTCACTTTGGACAAGTTCGATCCGCAAGTTCATTTATCAAAC
AATTCCATACAAAAGCATTACCGCAATGGTATTCGATCTGACAAGCTTCC
TGATTCTAATATGTGGTCTAGTGATGAGTTCAAAACATATCTTCAAACTA
TAGGAACGGCCATTCTTGGTGTACCGAACAAAGTTTGACATCCGACAATG
GTTTCTTGTCACCGATTGGAATCCTTTGGTCATCTGGTTTTACCAAGACT
GTTATGTCAGGAAAAGATACATCTTGGGACAGTAAGATCTACCCTGGAAT
GAAATCCGCCATCATTGGAGCTTTACAATGCTGTCAAACGTCTTTAGAAT
ATCGACGAAACTCTTTCGAACTTTACGGAGCCGATTTCATGTTGAGTGAG
AATTTAGACCCTTGGTTGATTGAGATAAATTCGAGTCCTGCTCTAGGGGC
CAGTACGCCGGTCACGAAGGAATTATGCCGGAACGTTATTGAGGACACGC
TGAAAGTTGTTTTAGATCGGAGGGAGAATAAACAGGCGGATGTTGGTCGT
TTTGAACTTGCTTTTCGGCAGCCGTACATTGCGCCACCCTCCTACATGGG
GTGTAATGTCTACATAGAAGGAAAACAGATTTCAAAACCGAAAGTAGCTA
AAGCTCCGGAACCGAAGATTGAGCTTAAGAAATCCGATGATAATTGTGAT
GATACCGGAAAAGAAGAAGAAAGTATGGTTGCCGTAAGAACAGACATTAA
AAAAGTAAAATCTAAAGAGACGTGTGAAAATGTGAAAACCAAAACAACGA
AAATTTTGTTCACAAGAATTCACTTTGGACAAGTTCGATCCGCAAGTTCA
TTTATCAAACAATTCCATACAAAAGCATTACCGCAATGGTATTCGATCTG
ACAAGCTTCCTGATTCTAATATGTGGTCTAGTGATGAGTTCAAAACATAT
CTTCAAACTATAGGAACGGCCATTCTTGGTGTACCGAACAAAGTTTGACA
TCCGACAATGGTTTCTTGTCACCGATTGGAATCCTTTGGTCATCTGGTTT
TACCAAGACTGTTATGTCAGGAAAAGATACATCTTGGGACAGTAAGATCT
ACCCTGGAATGAAATCCGCCATCATTGGAGCTTTACAATGCTGTCAAACG
TCTTTAGAATATCGACGAAACTCTTTCGAACTTTACGGAGCCGATTTCAT
GTTGAGTGAGAATTTAGACCCTTGGTTGATTGAGATAAATTCGAGTCCTG
CTCTAGGGGCCAGTACGCCGGTCACGAAGGAATTATGCCGGAACGTTATT
GAGGACACGCTGAAAGTTGTTTTAGATCGGAGGGAGAATAAACAGGCGGA
TGTTGGTCGTTTTGAACTTGCTTTTCGGCAGCCGTACATTGCGCCACCCT
CCTACATGGGGTGTAATGTCTACATAGAAGGAAAACAGATTTCAAAACCG
AAAGTAGCTAAAGCTCCGGAACCGAAGATTGAGCTTAAGAAATCCGATGA
TAATTGTGATGATACCGGAAAAGAAGAAGAAAGTATGGTTGCCGTAAGAA
CAGACATTAAAAAAGTAAAATCTAAAGAGACGTGTGAAAATGTGAAAACC
AAAACAACGAAAATTTTGTTCACAAGAATTCACTTTGGACAAGTTCGATC
CGCAAGTTCATTTATCAAACAATTCCATACAAAAGCATTACCGCAATGGT
ATTCGATCTGACAAGCTTCCTGATTCTAATATGTGGTCTAGTGATGAGTT
CAAAACATATCTTCAAACTATAGGAACGGCCATTCTTGGTGTACCGAACA
AAGTTTGACATCCGACAATGGTTTCTTGTCACCGATTGGAATCCTTTGGT
CATCTGGTTTTACCAAGACTGTTATGTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00073541-exon-scaffold_94-1575043694:264034..264141 | TCONS_00073541-exon-scaffold_94-1575043694:264034..264141 | Clytia hemisphaerica | exon |
| TCONS_00073541-exon-scaffold_94-1575043694:262678..262838 | TCONS_00073541-exon-scaffold_94-1575043694:262678..262838 | Clytia hemisphaerica | exon |
| TCONS_00073541-exon-scaffold_94-1575043694:261362..261905 | TCONS_00073541-exon-scaffold_94-1575043694:261362..261905 | Clytia hemisphaerica | exon |
| TCONS_00073541-exon-scaffold_94-1510915933:264034..264141 | TCONS_00073541-exon-scaffold_94-1510915933:264034..264141 | Clytia hemisphaerica | exon |
| TCONS_00073541-exon-scaffold_94-1510915933:262678..262838 | TCONS_00073541-exon-scaffold_94-1510915933:262678..262838 | Clytia hemisphaerica | exon |
| TCONS_00073541-exon-scaffold_94-1510915933:261362..261905 | TCONS_00073541-exon-scaffold_94-1510915933:261362..261905 | Clytia hemisphaerica | exon |
| TCONS_00073541-exon-scaffold_94-1491911889:264034..264141 | TCONS_00073541-exon-scaffold_94-1491911889:264034..264141 | Clytia hemisphaerica | exon |
| TCONS_00073541-exon-scaffold_94-1491911889:262678..262838 | TCONS_00073541-exon-scaffold_94-1491911889:262678..262838 | Clytia hemisphaerica | exon |
| TCONS_00073541-exon-scaffold_94-1491911889:261362..261905 | TCONS_00073541-exon-scaffold_94-1491911889:261362..261905 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_94 | supercontig | scaffold_94:261362..264141 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR004344 | TTL/TTLL_fam |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006464 | cellular protein modification process |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006464 |
cellular protein modification process |
Blast
BLAST of TCONS_00073541 vs. Swiss-Prot (Human)
Match: TTLL3 (Tubulin monoglycylase TTLL3 OS=Homo sapiens GN=TTLL3 PE=1 SV=2) HSP 1 Score: 254.218 bits (648), Expect = 4.275e-78 Identity = 115/217 (53.00%), Postives = 147/217 (67.74%), Query Frame = 2
Query: 2 ERPFLVYRTKFDIRQWFLVTDWNPLVIWFYQDCYVRFCSQEFTLDKFDPQVHLSNNSIQKHYRNGI-RSDKLPDSNMWSSDEFKTYLQTIGKDTSWDSKIYPGMKSAIIGALQCCQTSLEYRRNSFELYGADFMLSENLDPWLIEINSSPALGASTPVTKELCRNVIEDTLKVVLDRRENKQADVGRFELAFRQPYIAPPSYMGCNVYIEGKQISKP 649
ERP L++ TKFD+RQWFLVTDWNPL +WFY+D Y+RF +Q F+L D VHL NNSIQKH N R LP NMWSS F+ +LQ +G +W + I PGMK A+I ALQ Q +++ R+ SFELYGADF+ E+ PWLIEIN+SP + ST VT LC V DTL+VV+DR ++ D G FEL ++QP + P Y+G + +EG I KP
Sbjct: 325 ERPLLIFGTKFDLRQWFLVTDWNPLTVWFYRDSYIRFSTQPFSLKNLDNSVHLCNNSIQKHLENSCHRHPLLPPDNMWSSQRFQAHLQEMGAPNAWSTIIVPGMKDAVIHALQTSQDTVQCRKASFELYGADFVFGEDFQPWLIEINASPTMAPSTAVTARLCAGVQADTLRVVIDRMLDRNCDTGAFELIYKQPAVEVPQYVGIRLLVEGFTIKKP 541
The following BLAST results are available for this feature:
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