TCONS_00073541 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073541
Unique NameTCONS_00073541
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length813

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073541 ID=TCONS_00073541|Name=TCONS_00073541|organism=Clytia hemisphaerica|type=transcript|length=813bp
AGAACGGCCATTCTTGGTGTACCGAACAAAGTTTGACATCCGACAATGGT
TTCTTGTCACCGATTGGAATCCTTTGGTCATCTGGTTTTACCAAGACTGT
TATGTCAGATTTTGTTCACAAGAATTCACTTTGGACAAGTTCGATCCGCA
AGTTCATTTATCAAACAATTCCATACAAAAGCATTACCGCAATGGTATTC
GATCTGACAAGCTTCCTGATTCTAATATGTGGTCTAGTGATGAGTTCAAA
ACATATCTTCAAACTATAGgaAAAGATACATCTTGGGACAGTAAGATCTA
CCCTGGAATGAAATCCGCCATCATTGGAGCTTTACAATGCTGTCAAACGT
CTTTAGAATATCGACGAAACTCTTTCGAACTTTACGGAGCCGATTTCATG
TTGAGTGAGAATTTAGACCCTTGGTTGATTGAGATAAATTCGAGTCCTGC
TCTAGGGGCCAGTACGCCGGTCACGAAGGAATTATGCCGGAACGTTATTG
AGGACACGCTGAAAGTTGTTTTAGATCGGAGGGAGAATAAACAGGCGGAT
GTTGGTCGTTTTGAACTTGCTTTTCGGCAGCCGTACATTGCGCCACCCTC
CTACATGGGGTGTAATGTCTACATAGAAGGAAAACAGATTTCAAAACCGA
AAGTAGCTAAAGCTCCGGAACCGAAGATTGAGCTTAAGAAATCCGATGAT
AATTGTGATGATACcggaaaagaagaagaaagtaTGGTTGCCGTAAGAAC
AGacattaaaaaagtaaaatctaaaGAGACGTGTGAAAAtgtgaaaacca
aaacaacGAAATC
Run BLAST on NCBI

protein sequence of TCONS_00073541-protein

>TCONS_00073541-protein ID=TCONS_00073541-protein|Name=TCONS_00073541-protein|organism=Clytia hemisphaerica|type=polypeptide|length=270bp
ERPFLVYRTKFDIRQWFLVTDWNPLVIWFYQDCYVRFCSQEFTLDKFDPQ
VHLSNNSIQKHYRNGIRSDKLPDSNMWSSDEFKTYLQTIGKDTSWDSKIY
PGMKSAIIGALQCCQTSLEYRRNSFELYGADFMLSENLDPWLIEINSSPA
LGASTPVTKELCRNVIEDTLKVVLDRRENKQADVGRFELAFRQPYIAPPS
YMGCNVYIEGKQISKPKVAKAPEPKIELKKSDDNCDDTGKEEESMVAVRT
DIKKVKSKETCENVKTKTTK
Run BLAST on NCBI

transcript from alignment at scaffold_94:261362..264141-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073541 ID=TCONS_00073541|Name=TCONS_00073541|organism=Clytia hemisphaerica|type=transcript|length=2780bp|location=Sequence derived from alignment at scaffold_94:261362..264141- (Clytia hemisphaerica)
AGAACGGCCATTCTTGGTGTACCGAACAAAGTTTGACATCCGACAATGGT TTCTTGTCACCGATTGGAATCCTTTGGTCATCTGGTTTTACCAAGACTGT TATGTCAGGTTAGTAATCTTGTATGTTCTATTCACGAAATGTGCTCAATA ACACATAATACAGTTGATGAGTTAAAGGTTTTGTTTTTAAATAAGAGTGA TATCGTTCGCTTACTCGTCAATTTTAATTCACAAGCTTTTTGATATTGAA TTGACACAGATGTGGAGCAAGATTGATCAGAAAGAGAAAAGGAAAACATT TTTTCCTTATCAGCACTATATAACAATAGGCAAACAGTCTTCCTTGTAAA TTCATTATCAGTTCCTTAAAAAGCCGACCGCGTCGCTAAGCTCTAGTTTA GACGGCCGACTTTCTGCCCTGCCTATTCTAATTGTTAGAGTAGGCAGAAA GTGGGCACAAAGTTGGCAGTTAAAATCTTCGCTTGGAAAAGGTTGAAAGA AGACATTGCATTGACGTCAAAAGGGCTATGCATTGACTTTAGACAGCCCA CTTTATGCCAACTTTAATTCACAATTAGAATAGGCAGGGCGAAAAGTGGG CCGTCTAAACTAGAGCTAAGGGTTGATAGATGTGTTGGTGCATGTTTGTT AAGATTTGTATTTTGCATTTTCCTATAACTGTTACAAAATGTTACACCCT AACTGCTATGTTGATCTTTATCTCGAATTATTGTCCAAAATAACCCAATA ATATTCGTAACCTGGAAACTTGATTTTCTCTGCTACGCCATAGAAATATA TGTTATTAAGCGTAAAGTCTAAACTTGCGCCAACTGGGTACCGCACTTAG CTCTAGTTTAGACGGCCGACTTTCTGCCCTGCCTATTCTAATTGTTAGAG TAGGCAGAAAGAGGGCACAAAGTTGGTTGTTAAAATCTTTGCTTGGAAAG GTTTGAAAGAAGACATTGCATTGACGTCAAAAGAGGGCTATGCATCACTT TAGACAGCCCGCTCTACAGCCTGATTTAAAGTTGGGATAAAGTGGGTTGT CTAAAGTCAATGCATTGCCCTCTTTTGACGTCAATCCAATGTCTTCTTTC AATCTTTTCCAAGCAAATATTTTAACTGCCAACTTTGTGCCCACCTTCTA CCTATTCTAACAGTTAGAATAGGCAGGGCAGTAAGACGGCCGTCTAAACT AGAGCTTATCTTCCGTTGTTGTCTTAATTGCTCTGGTATGAATCATTTTT AATACATGTATTTTTCCGAGCTGTAATTTCTATTTCCTTTTCATATCCCA CAGATTTTGTTCACAAGAATTCACTTTGGACAAGTTCGATCCGCAAGTTC ATTTATCAAACAATTCCATACAAAAGCATTACCGCAATGGTATTCGATCT GACAAGCTTCCTGATTCTAATATGTGGTCTAGTGATGAGTTCAAAACATA TCTTCAAACTATAGGTAGGTAGCGAATAAGATTTGTATGTATAAAATGGT TTAGCTTAGTACCTTTTCTCCTCAGGTTTAGTTTATTTCTAGTAAGAAGG CAAGGTGTCAACTAGTCAGTCACATAGCCATGCTCCGCATATTCAGACCT AAGTTTGTATCCCAAATTTACTCGTTTTTCAATTATCTTTTGAATAAGCC AAAAATCATTGATTTTCGAGCACTTTCGATTTAGGCTAAAACATAGATTC TAGGCCTAAAATACAATGCCCAAAATGAGCAGTTTGGGCATCGATTTAGA AAAATCGGTCGATGACCTGAGATTCTGTAAGGGTTAAGCTGCCGAAAACC GAAAAAAAAAACAGAGATTGGAATCCCTTTCCGAGCGGAGCATGGCTTTG TGACAGACTAAACTCGATTGTGGGTTTTTTACACAATTTTACACAAACTT AAAAGGATACGTTCTATTTTTTTCAAACTAAAGGTAGATTGTAAATATCA TTTGATATTTATTATACCAATGTTCATCGATAGCTTTTAAAAATGCCAAG AAGATCTTCTCTCTATCAGCTTATAAAAATAGCTGGGTTTTCAACCTGAA CTTTGTCAGGCATAATTTAACTTTTCGTTGATTGTTTTGCATCCTGGATG TTTTCTTGAGCTCCACTGAGCTCCAATTCATTTAGATCGCTCAAGATTTT GTTAATTTGTATAATTATAGACGTCAAACACTCGTAATCTATTATTGTAT TGAAGAATAGCTGACTCAGCATTATTTTAATTTTAGGAAAAGATACATCT TGGGACAGTAAGATCTACCCTGGAATGAAATCCGCCATCATTGGAGCTTT ACAATGCTGTCAAACGTCTTTAGAATATCGACGAAACTCTTTCGAACTTT ACGGAGCCGATTTCATGTTGAGTGAGAATTTAGACCCTTGGTTGATTGAG ATAAATTCGAGTCCTGCTCTAGGGGCCAGTACGCCGGTCACGAAGGAATT ATGCCGGAACGTTATTGAGGACACGCTGAAAGTTGTTTTAGATCGGAGGG AGAATAAACAGGCGGATGTTGGTCGTTTTGAACTTGCTTTTCGGCAGCCG TACATTGCGCCACCCTCCTACATGGGGTGTAATGTCTACATAGAAGGAAA ACAGATTTCAAAACCGAAAGTAGCTAAAGCTCCGGAACCGAAGATTGAGC TTAAGAAATCCGATGATAATTGTGATGATACCGGAAAAGAAGAAGAAAGT ATGGTTGCCGTAAGAACAGACATTAAAAAAGTAAAATCTAAAGAGACGTG TGAAAATGTGAAAACCAAAACAACGAAATC

Coding sequence (CDS) from alignment at scaffold_94:261362..264141-

>TCONS_00073541 ID=TCONS_00073541|Name=TCONS_00073541|organism=Clytia hemisphaerica|type=CDS|length=2430bp|location=Sequence derived from alignment at scaffold_94:261362..264141- (Clytia hemisphaerica)
GAAAAGATACATCTTGGGACAGTAAGATCTACCCTGGAATGAAATCCGCC
ATCATTGGAGCTTTACAATGCTGTCAAACGTCTTTAGAATATCGACGAAA
CTCTTTCGAACTTTACGGAGCCGATTTCATGTTGAGTGAGAATTTAGACC
CTTGGTTGATTGAGATAAATTCGAGTCCTGCTCTAGGGGCCAGTACGCCG
GTCACGAAGGAATTATGCCGGAACGTTATTGAGGACACGCTGAAAGTTGT
TTTAGATCGGAGGGAGAATAAACAGGCGGATGTTGGTCGTTTTGAACTTG
CTTTTCGGCAGCCGTACATTGCGCCACCCTCCTACATGGGGTGTAATGTC
TACATAGAAGGAAAACAGATTTCAAAACCGAAAGTAGCTAAAGCTCCGGA
ACCGAAGATTGAGCTTAAGAAATCCGATGATAATTGTGATGATACCGGAA
AAGAAGAAGAAAGTATGGTTGCCGTAAGAACAGACATTAAAAAAGTAAAA
TCTAAAGAGACGTGTGAAAATGTGAAAACCAAAACAACGAAAATTTTGTT
CACAAGAATTCACTTTGGACAAGTTCGATCCGCAAGTTCATTTATCAAAC
AATTCCATACAAAAGCATTACCGCAATGGTATTCGATCTGACAAGCTTCC
TGATTCTAATATGTGGTCTAGTGATGAGTTCAAAACATATCTTCAAACTA
TAGGAACGGCCATTCTTGGTGTACCGAACAAAGTTTGACATCCGACAATG
GTTTCTTGTCACCGATTGGAATCCTTTGGTCATCTGGTTTTACCAAGACT
GTTATGTCAGGAAAAGATACATCTTGGGACAGTAAGATCTACCCTGGAAT
GAAATCCGCCATCATTGGAGCTTTACAATGCTGTCAAACGTCTTTAGAAT
ATCGACGAAACTCTTTCGAACTTTACGGAGCCGATTTCATGTTGAGTGAG
AATTTAGACCCTTGGTTGATTGAGATAAATTCGAGTCCTGCTCTAGGGGC
CAGTACGCCGGTCACGAAGGAATTATGCCGGAACGTTATTGAGGACACGC
TGAAAGTTGTTTTAGATCGGAGGGAGAATAAACAGGCGGATGTTGGTCGT
TTTGAACTTGCTTTTCGGCAGCCGTACATTGCGCCACCCTCCTACATGGG
GTGTAATGTCTACATAGAAGGAAAACAGATTTCAAAACCGAAAGTAGCTA
AAGCTCCGGAACCGAAGATTGAGCTTAAGAAATCCGATGATAATTGTGAT
GATACCGGAAAAGAAGAAGAAAGTATGGTTGCCGTAAGAACAGACATTAA
AAAAGTAAAATCTAAAGAGACGTGTGAAAATGTGAAAACCAAAACAACGA
AAATTTTGTTCACAAGAATTCACTTTGGACAAGTTCGATCCGCAAGTTCA
TTTATCAAACAATTCCATACAAAAGCATTACCGCAATGGTATTCGATCTG
ACAAGCTTCCTGATTCTAATATGTGGTCTAGTGATGAGTTCAAAACATAT
CTTCAAACTATAGGAACGGCCATTCTTGGTGTACCGAACAAAGTTTGACA
TCCGACAATGGTTTCTTGTCACCGATTGGAATCCTTTGGTCATCTGGTTT
TACCAAGACTGTTATGTCAGGAAAAGATACATCTTGGGACAGTAAGATCT
ACCCTGGAATGAAATCCGCCATCATTGGAGCTTTACAATGCTGTCAAACG
TCTTTAGAATATCGACGAAACTCTTTCGAACTTTACGGAGCCGATTTCAT
GTTGAGTGAGAATTTAGACCCTTGGTTGATTGAGATAAATTCGAGTCCTG
CTCTAGGGGCCAGTACGCCGGTCACGAAGGAATTATGCCGGAACGTTATT
GAGGACACGCTGAAAGTTGTTTTAGATCGGAGGGAGAATAAACAGGCGGA
TGTTGGTCGTTTTGAACTTGCTTTTCGGCAGCCGTACATTGCGCCACCCT
CCTACATGGGGTGTAATGTCTACATAGAAGGAAAACAGATTTCAAAACCG
AAAGTAGCTAAAGCTCCGGAACCGAAGATTGAGCTTAAGAAATCCGATGA
TAATTGTGATGATACCGGAAAAGAAGAAGAAAGTATGGTTGCCGTAAGAA
CAGACATTAAAAAAGTAAAATCTAAAGAGACGTGTGAAAATGTGAAAACC
AAAACAACGAAAATTTTGTTCACAAGAATTCACTTTGGACAAGTTCGATC
CGCAAGTTCATTTATCAAACAATTCCATACAAAAGCATTACCGCAATGGT
ATTCGATCTGACAAGCTTCCTGATTCTAATATGTGGTCTAGTGATGAGTT
CAAAACATATCTTCAAACTATAGGAACGGCCATTCTTGGTGTACCGAACA
AAGTTTGACATCCGACAATGGTTTCTTGTCACCGATTGGAATCCTTTGGT
CATCTGGTTTTACCAAGACTGTTATGTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045647XLOC_045647Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073541-proteinTCONS_00073541-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073541-exon-scaffold_94-1575043694:264034..264141TCONS_00073541-exon-scaffold_94-1575043694:264034..264141Clytia hemisphaericaexon
TCONS_00073541-exon-scaffold_94-1575043694:262678..262838TCONS_00073541-exon-scaffold_94-1575043694:262678..262838Clytia hemisphaericaexon
TCONS_00073541-exon-scaffold_94-1575043694:261362..261905TCONS_00073541-exon-scaffold_94-1575043694:261362..261905Clytia hemisphaericaexon
TCONS_00073541-exon-scaffold_94-1510915933:264034..264141TCONS_00073541-exon-scaffold_94-1510915933:264034..264141Clytia hemisphaericaexon
TCONS_00073541-exon-scaffold_94-1510915933:262678..262838TCONS_00073541-exon-scaffold_94-1510915933:262678..262838Clytia hemisphaericaexon
TCONS_00073541-exon-scaffold_94-1510915933:261362..261905TCONS_00073541-exon-scaffold_94-1510915933:261362..261905Clytia hemisphaericaexon
TCONS_00073541-exon-scaffold_94-1491911889:264034..264141TCONS_00073541-exon-scaffold_94-1491911889:264034..264141Clytia hemisphaericaexon
TCONS_00073541-exon-scaffold_94-1491911889:262678..262838TCONS_00073541-exon-scaffold_94-1491911889:262678..262838Clytia hemisphaericaexon
TCONS_00073541-exon-scaffold_94-1491911889:261362..261905TCONS_00073541-exon-scaffold_94-1491911889:261362..261905Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_94supercontigscaffold_94:261362..264141 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.82129 8.06106 2.84366 1.53441 25.9616 21.3085 14.826 12.5034 7.12769 11.011 9.32854 8.00411 5.53309 4.8873 4.34221 3.77803 3.56108 2.81923 6.91389 4.28906 2.49628 2.63821 6.89748 6.73038 44.9722 27.1073 4.07959 4.75224 5.48241 6.4343
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR004344TTL/TTLL_fam
Vocabulary: Biological Process
TermDefinition
GO:0006464cellular protein modification process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006464 cellular protein modification process
Blast
BLAST of TCONS_00073541 vs. Swiss-Prot (Human)
Match: TTLL3 (Tubulin monoglycylase TTLL3 OS=Homo sapiens GN=TTLL3 PE=1 SV=2)

HSP 1 Score: 254.218 bits (648), Expect = 4.275e-78
Identity = 115/217 (53.00%), Postives = 147/217 (67.74%), Query Frame = 2
Query:    2 ERPFLVYRTKFDIRQWFLVTDWNPLVIWFYQDCYVRFCSQEFTLDKFDPQVHLSNNSIQKHYRNGI-RSDKLPDSNMWSSDEFKTYLQTIGKDTSWDSKIYPGMKSAIIGALQCCQTSLEYRRNSFELYGADFMLSENLDPWLIEINSSPALGASTPVTKELCRNVIEDTLKVVLDRRENKQADVGRFELAFRQPYIAPPSYMGCNVYIEGKQISKP 649
            ERP L++ TKFD+RQWFLVTDWNPL +WFY+D Y+RF +Q F+L   D  VHL NNSIQKH  N   R   LP  NMWSS  F+ +LQ +G   +W + I PGMK A+I ALQ  Q +++ R+ SFELYGADF+  E+  PWLIEIN+SP +  ST VT  LC  V  DTL+VV+DR  ++  D G FEL ++QP +  P Y+G  + +EG  I KP
Sbjct:  325 ERPLLIFGTKFDLRQWFLVTDWNPLTVWFYRDSYIRFSTQPFSLKNLDNSVHLCNNSIQKHLENSCHRHPLLPPDNMWSSQRFQAHLQEMGAPNAWSTIIVPGMKDAVIHALQTSQDTVQCRKASFELYGADFVFGEDFQPWLIEINASPTMAPSTAVTARLCAGVQADTLRVVIDRMLDRNCDTGAFELIYKQPAVEVPQYVGIRLLVEGFTIKKP 541          
The following BLAST results are available for this feature:
BLAST of TCONS_00073541 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TTLL34.275e-7853.00Tubulin monoglycylase TTLL3 OS=Homo sapiens GN=TTL... [more]
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