|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073227 ID=TCONS_00073227|Name=TCONS_00073227|organism=Clytia hemisphaerica|type=transcript|length=941bp
TAGTCTTTATCGTTACATATTCTGATCAAAAGCACAGCTCAGGAAAGTGG
TATTCGAACTTTTTACCAAGGAATGATTCCCAACTTGGCGTACGTTTTTC
CGTATTGTGGATTGAACTTCTTGTTTTATGGCTTGCTAAACAGGACATGG
AACTTACTACAGTTCAGAGAGTCCAGCGTCAAATCTCTGACATGTGGTAC
AATAAGTGGAATCTTCGCAAAAGCTTTACTTCTACCAATTGATAACGTGA
AGAAGAGATTACAAGTGCAAGGTTCTAAAGACTTCCAATCGTCTTACAAG
GGTATGGTTAACTGTCTTCAAACTGTGATTCGTGAACAAGGAATACATGC
CTTGTATCGTGGTATCGTTCCTTCCGTGCTAAAGACTGGTCTGGCAACTG
GTATTTCTTTTTTCGTCTACGAAGAAACCTGCAAACTGTTGTCAAAATAA
AGGATACAATTTATTTGGCAATGAATTACGCGAAATCTttgatttgatca
aataattcCATAACCCAAATTACATGCTACGAATGCTAAGGTTTTATGGA
TCGTCACGAACAGAGTTAGCAGGTATTCATTTGTCAGAGAAAGCTTGAAT
ATGCTTACTTCAAGTAAAGGACACTCAAGTAAAAGGAAAATGGATGGCTC
CTTTAGCAAATATGGTTTATTTGTCATTCGTCGCAGATAATTCATTGAAA
ACTTTTGCAAAGAATACTTAAGATTCTTTCTTAAGGACTctgtttaaaaa
tgtttttgacgCGCAGGAAGACGACTCCAAGAAATCAAGTACTGCTCAAA
GGTCAATTACAGGAATTCAAATTGATGGACTGATTTGTTTTCTGAAATTA
TTGTTATaatagaatatttttttaataaacgcgtccctttattttttatc
attcatACCGGAAAATAATTCAACTTATATGCTTCCGCGAT Run BLAST on NCBI protein sequence of TCONS_00073227-protein >TCONS_00073227-protein ID=TCONS_00073227-protein|Name=TCONS_00073227-protein|organism=Clytia hemisphaerica|type=polypeptide|length=125bp
MIPNLAYVFPYCGLNFLFYGLLNRTWNLLQFRESSVKSLTCGTISGIFAK
ALLLPIDNVKKRLQVQGSKDFQSSYKGMVNCLQTVIREQGIHALYRGIVP
SVLKTGLATGISFFVYEETCKLLSK Run BLAST on NCBI transcript from alignment at scaffold_88:384485..388172- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00073227 ID=TCONS_00073227|Name=TCONS_00073227|organism=Clytia hemisphaerica|type=transcript|length=3688bp|location=Sequence derived from alignment at scaffold_88:384485..388172- (Clytia hemisphaerica)
TAGTCTTTATCGTTACATATTCTGATCAAAAGCACAGCTCAGGAAAGTGG
TATTCGAACTTTTTACCAAGGTACTCGAATGTTTCTTATAAATCTTTTAT
TCTTTGATTTCTATTGCTTTGTCCATTCAAAGAATATATAAAAATAATTT
TTGGAAACTGTCTTTGACTAGAAAATGTTTGTCCAACTGATTAGCAGTTT
ATTTATAGCTAAAAGTCGTCGAAATTTTCCTCATCCAATAGGTCGATCTT
TATTGCCGTGTTGTGATTTGGCGTACCCGGCGGATTGAGGGATGCTTGCC
CCATACTTATCTTCCACCTCAATGTACAATCTTTTGGAAATTTTGAAACA
CCTAATGTCTGTGTCAAAAAAGGCAGTGTTTTTACTTTTGGCCGTAACTT
TCCAACCAGTTGTCTTATAATAAAAAGTTTGATATCGTTGGAAAGATATC
AAATGCGCTCATGTTTTCCACTAATTAGTATTTCAAAATTCGTCCAAAAT
AGTGAAGAAAAACGAAGAAGAAAATTTGTTAATTTTGATAGAAAATGCGC
TCATGTTTTTGGCTTCGTCCAAAAAAGTGCAGGAAAACAAAGAAAAAAAT
TTGCTACTTTTGATAGAAAGGTGCTTTGAAAATGATTTTTACATCAATCG
AAAGTTGAATAATACGCGAGTTCAAAAATATATGGGTTCGGTCAAAGATT
TTATATTTTGTTTTGAGATTTAAAGGGAAATCTGGCTAAAAATTTCCTGA
AAATTCCAAAAAAAGGGGGGGAGGGCCTAACGTTTTCGAATATTCTGGGG
GCGGGGGCTGAGGCGAAAGGGGTCACAACTGATTTTTCCTGGGGGCTGAG
GATTTTGAGAGAATCAAAAGCCAACTCTTTAAATCTCTAAGCATGGATTG
TAATATATTTTCTCAGAATAGTTTTTTTTTTCACTATTTAGATATTCACG
AGTAGTTGTGTTTTTATATTTCACTAAGCCATAGTATTTAGGTATTTAGA
TTTAGATAATGATGTACGTATTCGAAAAAGGAGAAAGATTTTAGCATTCA
TTGAACCCATGTCTAGCTTTTCCCCGGTAAACCCGAGACCATCTGGGGGC
TAGCATGAATCAAATTTTCTGGGGGGGACTAAGTGAAAAGGGGGGACTGA
ACGTTTTTGAATTTTCTGGGGGGCTGATACCCCTGAGGACAATAGAGTTG
TTATATTTTTGGACTCGTGTATTATTCAGCTTTCGATTGATTTGAGACAC
ATTTTCGATAGTACCTTTTTTTCTTCAATTTTCGTCACTTTCTTGCACAA
ATCTTGAAAAACTGAGTTGTAGAAAATATAAGCGTATTTAAATATCTTTC
CAACGATATCCAAACTTTTTATTATACGACAACTGGTTGGAAAGTTATCG
CCGAAAACAAAATTACTTCACTCCTTTTTGACTTCAGTTATTCCAATGTC
ATGGTGAAAAACTGTCTTTTGACATAAAAACTGCCATTCACATGTCATGG
ACATCGCTGGTCTTTGTTTAGTTTGTAAATTTCCATATAGTACCTAAAGC
AGGTTTATTTTTTATTTTTTGTCCCTTTTTAAGGAATGATTCCCAACTTG
GCGTACGTTTTTCCGTATTGTGGATTGAACTTCTTGTTTTATGGCTTGCT
AAACAGGACATGGAACTTACTACAGGTATACCTTTGTATTATATTATGAT
ATTTCTCACATAAATTTCTAAAGGATAGGATTACTATGATAAGATATCAG
ATAAAAACATTCAAAATTACTGGATCAGATCGAATTCAAAGTGTTGAATT
TTCTTGCTTCATCCGGTGTATGAATGTTGTTTACAATATAAGTACTTACT
ATGATAATTACTTTTCCTTTCATCCCTTAGTTCAGAGAGTCCAGCGTCAA
ATCTCTGACATGTGGTACAATAAGTGGAATCTTCGCAAAAGCTTTACTTC
TACCAATTGATAACGTGAAGAAGAGATTACAAGTGCAAGGTTCTAAAGAC
TTCCAATCGTCTTACAAGGGTATGGTTAACTGTCTTCAAACTGTGATTCG
TGAACAAGGAATACATGCCTTGTATCGTGGTATCGTTCCTTCCGTGCTAA
AGGTATACAGTATGATTTTTTTTTTGCTGAATAATTTGAGACTTCTTCAA
TCTGATTAGGATGACGGGCTTAAAAATAGCGAAATTTCCTGGGTTTAAAA
TTTAGTTTGAAAATTTGAAAAAGAAGTTAAATATTTTCGTGTGGATTTAC
TTTCACAAGTCAACATTTTTACGTGATATCGTGTGATTTTTCCCACAAAA
AGGCCAAAGTTTAAGCAACAAAAACATGAAAAGTAGGGCTTTCTTATATT
GGGCATCACACTTACTGAAGTGATCGCTTCATATGTGCTCGATTTCAGAT
ATTTTATGATTTACTCAATACAAGAGGCGGGGTTAGTGAGAAAATGTTTC
GCCCACGTATACTGTAATTTAAAAGTTGATCGACCGCAAGCTATGGCAGT
TGTATTGTTTCCTTCGCAGCTTTCGTAGATTAAAGGTATTTTTTTACATA
AGTGTTCCCGTTTCATATAAGACACATACTTAATATCAGGACAGTGTCTG
CCTATTGTTATATTGTGCTGATATAAATAACAAAAAAATGTTTCTCTTTT
CCTCTTTCTGACAAATCTTGCTCCACATTCGCGTCAATTCAATATCAAAA
AGCCTTTAAATTAAAGTTGATGAGTAAGCAAACGATATCACTCTTATTTA
AAAACAAAACCTTTAAAGAAATCGTCCTTCCACTTACCGTTAATACCACA
ATGCTGTGTTTCATAAAGTACACAAATGATATTTATCCTTTATTAACAGA
AATATTCTTTAACCCTCCTAATGGACGTAAAAATATATCAAAAATAGGTT
TCTTTTGCTAACCTTCAGATCATAGCTCAGAACCACTTCATTTTTACCCA
AAGCTTTCTCGTTTTTTTGGAAAGCTTTCCAACGGTATCAAAGTTTTGTC
TGAAACCCATTTTAAGGTCCGCAATCAATTTTTGAACTTTGAGAAGTCGG
AAAAACCTGAGAAAGTAATGTGATCTTCAGATAAACTGTATTTTAACTTT
TATTACAATTGATGTCAATATTTGTACCTAGACTGGTCTGGCAACTGGTA
TTTCTTTTTTCGTCTACGAAGAAACCTGCAAACTGTTGTCAAAATAAAGG
ATACAATTTATTTGGCAATGAATTACGCGAAATCTTTGATTTGATCAAAT
AATTCCATAACCCAAATTACATGCTACGAATGCTAAGGTTTTATGGATCG
TCACGAACAGAGTTAGCAGGTATTCATTTGTCAGAGAAAGCTTGAATATG
CTTACTTCAAGTAAAGGACACTCAAGTAAAAGGAAAATGGATGGCTCCTT
TAGCAAATATGGTTTATTTGTCATTCGTCGCAGATAATTCATTGAAAACT
TTTGCAAAGAATACTTAAGATTCTTTCTTAAGGACTCTGTTTAAAAATGT
TTTTGACGCGCAGGAAGACGACTCCAAGAAATCAAGTACTGCTCAAAGGT
CAATTACAGGAATTCAAATTGATGGACTGATTTGTTTTCTGAAATTATTG
TTATAATAGAATATTTTTTTAATAAACGCGTCCCTTTATTTTTTATCATT
CATACCGGAAAATAATTCAACTTATATGCTTCCGCGAT Coding sequence (CDS) from alignment at scaffold_88:384485..388172- >TCONS_00073227 ID=TCONS_00073227|Name=TCONS_00073227|organism=Clytia hemisphaerica|type=CDS|length=1134bp|location=Sequence derived from alignment at scaffold_88:384485..388172- (Clytia hemisphaerica)
ACTGGTCTGGCAACTGGTATTTCTTTTTTCGTCTACGAAGAAACCTGCAA
ACTGTTGTCAAAATAATTCAGAGAGTCCAGCGTCAAATCTCTGACATGTG
GTACAATAAGTGGAATCTTCGCAAAAGCTTTACTTCTACCAATTGATAAC
GTGAAGAAGAGATTACAAGTGCAAGGTTCTAAAGACTTCCAATCGTCTTA
CAAGGGTATGGTTAACTGTCTTCAAACTGTGATTCGTGAACAAGGAATAC
ATGCCTTGTATCGTGGTATCGTTCCTTCCGTGCTAAAGATGATTCCCAAC
TTGGCGTACGTTTTTCCGTATTGTGGATTGAACTTCTTGTTTTATGGCTT
GCTAAACAGGACATGGAACTTACTACAGACTGGTCTGGCAACTGGTATTT
CTTTTTTCGTCTACGAAGAAACCTGCAAACTGTTGTCAAAATAATTCAGA
GAGTCCAGCGTCAAATCTCTGACATGTGGTACAATAAGTGGAATCTTCGC
AAAAGCTTTACTTCTACCAATTGATAACGTGAAGAAGAGATTACAAGTGC
AAGGTTCTAAAGACTTCCAATCGTCTTACAAGGGTATGGTTAACTGTCTT
CAAACTGTGATTCGTGAACAAGGAATACATGCCTTGTATCGTGGTATCGT
TCCTTCCGTGCTAAAGATGATTCCCAACTTGGCGTACGTTTTTCCGTATT
GTGGATTGAACTTCTTGTTTTATGGCTTGCTAAACAGGACATGGAACTTA
CTACAGACTGGTCTGGCAACTGGTATTTCTTTTTTCGTCTACGAAGAAAC
CTGCAAACTGTTGTCAAAATAATTCAGAGAGTCCAGCGTCAAATCTCTGA
CATGTGGTACAATAAGTGGAATCTTCGCAAAAGCTTTACTTCTACCAATT
GATAACGTGAAGAAGAGATTACAAGTGCAAGGTTCTAAAGACTTCCAATC
GTCTTACAAGGGTATGGTTAACTGTCTTCAAACTGTGATTCGTGAACAAG
GAATACATGCCTTGTATCGTGGTATCGTTCCTTCCGTGCTAAAGATGATT
CCCAACTTGGCGTACGTTTTTCCGTATTGTGGATTGAACTTCTTGTTTTA
TGGCTTGCTAAACAGGACATGGAACTTACTACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00073227-exon-scaffold_88-1575043694:388103..388172 | TCONS_00073227-exon-scaffold_88-1575043694:388103..388172 | Clytia hemisphaerica | exon |
| TCONS_00073227-exon-scaffold_88-1575043694:386498..386589 | TCONS_00073227-exon-scaffold_88-1575043694:386498..386589 | Clytia hemisphaerica | exon |
| TCONS_00073227-exon-scaffold_88-1575043694:386071..386292 | TCONS_00073227-exon-scaffold_88-1575043694:386071..386292 | Clytia hemisphaerica | exon |
| TCONS_00073227-exon-scaffold_88-1575043694:384485..385041 | TCONS_00073227-exon-scaffold_88-1575043694:384485..385041 | Clytia hemisphaerica | exon |
| TCONS_00073227-exon-scaffold_88-1510915933:388103..388172 | TCONS_00073227-exon-scaffold_88-1510915933:388103..388172 | Clytia hemisphaerica | exon |
| TCONS_00073227-exon-scaffold_88-1510915933:386498..386589 | TCONS_00073227-exon-scaffold_88-1510915933:386498..386589 | Clytia hemisphaerica | exon |
| TCONS_00073227-exon-scaffold_88-1510915933:386071..386292 | TCONS_00073227-exon-scaffold_88-1510915933:386071..386292 | Clytia hemisphaerica | exon |
| TCONS_00073227-exon-scaffold_88-1510915933:384485..385041 | TCONS_00073227-exon-scaffold_88-1510915933:384485..385041 | Clytia hemisphaerica | exon |
| TCONS_00073227-exon-scaffold_88-1491911889:388103..388172 | TCONS_00073227-exon-scaffold_88-1491911889:388103..388172 | Clytia hemisphaerica | exon |
| TCONS_00073227-exon-scaffold_88-1491911889:386498..386589 | TCONS_00073227-exon-scaffold_88-1491911889:386498..386589 | Clytia hemisphaerica | exon |
| TCONS_00073227-exon-scaffold_88-1491911889:386071..386292 | TCONS_00073227-exon-scaffold_88-1491911889:386071..386292 | Clytia hemisphaerica | exon |
| TCONS_00073227-exon-scaffold_88-1491911889:384485..385041 | TCONS_00073227-exon-scaffold_88-1491911889:384485..385041 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_88 | supercontig | scaffold_88:384485..388172 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR023395 | Mt_carrier_dom |
| IPR018108 | Mitochondrial_sb/sol_carrier |
Blast
BLAST of TCONS_00073227 vs. Swiss-Prot (Human)
Match: TPC (Mitochondrial thiamine pyrophosphate carrier OS=Homo sapiens GN=SLC25A19 PE=1 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 4.609e-22 Identity = 50/154 (32.47%), Postives = 87/154 (56.49%), Query Frame = 1
Query: 10 SLHILIKSTAQESGIRTFYQGMIPNLAYVFPYCGLNFLFYGLLNR--TWNLLQF--RESSVKSLTCGTISGIFAKALLLPIDNVKKRLQVQGSKDFQSS------YKGMVNCLQTVIREQGIHALYRGIVPSVLKTGLATGISFFVYEETCKLL 441
+L + + + G + FY+G+ P L +FPY GL F Y L W + + ++++L CG+ +G+ +K L P+D KKRLQV G + +++ YKG+++C + V++++G ++G+ PS+LK L+TG FF YE C +
Sbjct: 157 TLRHAVGTMYRSEGPQVFYKGLAPTLIAIFPYAGLQFSCYSSLKHLYKWAIPAEGKKNENLQNLLCGSGAGVISKTLTYPLDLFKKRLQVGGFEHARAAFGQVRRYKGLMDCAKQVLQKEGALGFFKGLSPSLLKAALSTGFMFFSYEFFCNVF 310
The following BLAST results are available for this feature:
|
