TCONS_00073227 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073227
Unique NameTCONS_00073227
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length941

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073227 ID=TCONS_00073227|Name=TCONS_00073227|organism=Clytia hemisphaerica|type=transcript|length=941bp
TAGTCTTTATCGTTACATATTCTGATCAAAAGCACAGCTCAGGAAAGTGG
TATTCGAACTTTTTACCAAGGAATGATTCCCAACTTGGCGTACGTTTTTC
CGTATTGTGGATTGAACTTCTTGTTTTATGGCTTGCTAAACAGGACATGG
AACTTACTACAGTTCAGAGAGTCCAGCGTCAAATCTCTGACATGTGGTAC
AATAAGTGGAATCTTCGCAAAAGCTTTACTTCTACCAATTGATAACGTGA
AGAAGAGATTACAAGTGCAAGGTTCTAAAGACTTCCAATCGTCTTACAAG
GGTATGGTTAACTGTCTTCAAACTGTGATTCGTGAACAAGGAATACATGC
CTTGTATCGTGGTATCGTTCCTTCCGTGCTAAAGACTGGTCTGGCAACTG
GTATTTCTTTTTTCGTCTACGAAGAAACCTGCAAACTGTTGTCAAAATAA
AGGATACAATTTATTTGGCAATGAATTACGCGAAATCTttgatttgatca
aataattcCATAACCCAAATTACATGCTACGAATGCTAAGGTTTTATGGA
TCGTCACGAACAGAGTTAGCAGGTATTCATTTGTCAGAGAAAGCTTGAAT
ATGCTTACTTCAAGTAAAGGACACTCAAGTAAAAGGAAAATGGATGGCTC
CTTTAGCAAATATGGTTTATTTGTCATTCGTCGCAGATAATTCATTGAAA
ACTTTTGCAAAGAATACTTAAGATTCTTTCTTAAGGACTctgtttaaaaa
tgtttttgacgCGCAGGAAGACGACTCCAAGAAATCAAGTACTGCTCAAA
GGTCAATTACAGGAATTCAAATTGATGGACTGATTTGTTTTCTGAAATTA
TTGTTATaatagaatatttttttaataaacgcgtccctttattttttatc
attcatACCGGAAAATAATTCAACTTATATGCTTCCGCGAT
Run BLAST on NCBI

protein sequence of TCONS_00073227-protein

>TCONS_00073227-protein ID=TCONS_00073227-protein|Name=TCONS_00073227-protein|organism=Clytia hemisphaerica|type=polypeptide|length=125bp
MIPNLAYVFPYCGLNFLFYGLLNRTWNLLQFRESSVKSLTCGTISGIFAK
ALLLPIDNVKKRLQVQGSKDFQSSYKGMVNCLQTVIREQGIHALYRGIVP
SVLKTGLATGISFFVYEETCKLLSK
Run BLAST on NCBI

transcript from alignment at scaffold_88:384485..388172-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073227 ID=TCONS_00073227|Name=TCONS_00073227|organism=Clytia hemisphaerica|type=transcript|length=3688bp|location=Sequence derived from alignment at scaffold_88:384485..388172- (Clytia hemisphaerica)
TAGTCTTTATCGTTACATATTCTGATCAAAAGCACAGCTCAGGAAAGTGG
TATTCGAACTTTTTACCAAGGTACTCGAATGTTTCTTATAAATCTTTTAT
TCTTTGATTTCTATTGCTTTGTCCATTCAAAGAATATATAAAAATAATTT
TTGGAAACTGTCTTTGACTAGAAAATGTTTGTCCAACTGATTAGCAGTTT
ATTTATAGCTAAAAGTCGTCGAAATTTTCCTCATCCAATAGGTCGATCTT
TATTGCCGTGTTGTGATTTGGCGTACCCGGCGGATTGAGGGATGCTTGCC
CCATACTTATCTTCCACCTCAATGTACAATCTTTTGGAAATTTTGAAACA
CCTAATGTCTGTGTCAAAAAAGGCAGTGTTTTTACTTTTGGCCGTAACTT
TCCAACCAGTTGTCTTATAATAAAAAGTTTGATATCGTTGGAAAGATATC
AAATGCGCTCATGTTTTCCACTAATTAGTATTTCAAAATTCGTCCAAAAT
AGTGAAGAAAAACGAAGAAGAAAATTTGTTAATTTTGATAGAAAATGCGC
TCATGTTTTTGGCTTCGTCCAAAAAAGTGCAGGAAAACAAAGAAAAAAAT
TTGCTACTTTTGATAGAAAGGTGCTTTGAAAATGATTTTTACATCAATCG
AAAGTTGAATAATACGCGAGTTCAAAAATATATGGGTTCGGTCAAAGATT
TTATATTTTGTTTTGAGATTTAAAGGGAAATCTGGCTAAAAATTTCCTGA
AAATTCCAAAAAAAGGGGGGGAGGGCCTAACGTTTTCGAATATTCTGGGG
GCGGGGGCTGAGGCGAAAGGGGTCACAACTGATTTTTCCTGGGGGCTGAG
GATTTTGAGAGAATCAAAAGCCAACTCTTTAAATCTCTAAGCATGGATTG
TAATATATTTTCTCAGAATAGTTTTTTTTTTCACTATTTAGATATTCACG
AGTAGTTGTGTTTTTATATTTCACTAAGCCATAGTATTTAGGTATTTAGA
TTTAGATAATGATGTACGTATTCGAAAAAGGAGAAAGATTTTAGCATTCA
TTGAACCCATGTCTAGCTTTTCCCCGGTAAACCCGAGACCATCTGGGGGC
TAGCATGAATCAAATTTTCTGGGGGGGACTAAGTGAAAAGGGGGGACTGA
ACGTTTTTGAATTTTCTGGGGGGCTGATACCCCTGAGGACAATAGAGTTG
TTATATTTTTGGACTCGTGTATTATTCAGCTTTCGATTGATTTGAGACAC
ATTTTCGATAGTACCTTTTTTTCTTCAATTTTCGTCACTTTCTTGCACAA
ATCTTGAAAAACTGAGTTGTAGAAAATATAAGCGTATTTAAATATCTTTC
CAACGATATCCAAACTTTTTATTATACGACAACTGGTTGGAAAGTTATCG
CCGAAAACAAAATTACTTCACTCCTTTTTGACTTCAGTTATTCCAATGTC
ATGGTGAAAAACTGTCTTTTGACATAAAAACTGCCATTCACATGTCATGG
ACATCGCTGGTCTTTGTTTAGTTTGTAAATTTCCATATAGTACCTAAAGC
AGGTTTATTTTTTATTTTTTGTCCCTTTTTAAGGAATGATTCCCAACTTG
GCGTACGTTTTTCCGTATTGTGGATTGAACTTCTTGTTTTATGGCTTGCT
AAACAGGACATGGAACTTACTACAGGTATACCTTTGTATTATATTATGAT
ATTTCTCACATAAATTTCTAAAGGATAGGATTACTATGATAAGATATCAG
ATAAAAACATTCAAAATTACTGGATCAGATCGAATTCAAAGTGTTGAATT
TTCTTGCTTCATCCGGTGTATGAATGTTGTTTACAATATAAGTACTTACT
ATGATAATTACTTTTCCTTTCATCCCTTAGTTCAGAGAGTCCAGCGTCAA
ATCTCTGACATGTGGTACAATAAGTGGAATCTTCGCAAAAGCTTTACTTC
TACCAATTGATAACGTGAAGAAGAGATTACAAGTGCAAGGTTCTAAAGAC
TTCCAATCGTCTTACAAGGGTATGGTTAACTGTCTTCAAACTGTGATTCG
TGAACAAGGAATACATGCCTTGTATCGTGGTATCGTTCCTTCCGTGCTAA
AGGTATACAGTATGATTTTTTTTTTGCTGAATAATTTGAGACTTCTTCAA
TCTGATTAGGATGACGGGCTTAAAAATAGCGAAATTTCCTGGGTTTAAAA
TTTAGTTTGAAAATTTGAAAAAGAAGTTAAATATTTTCGTGTGGATTTAC
TTTCACAAGTCAACATTTTTACGTGATATCGTGTGATTTTTCCCACAAAA
AGGCCAAAGTTTAAGCAACAAAAACATGAAAAGTAGGGCTTTCTTATATT
GGGCATCACACTTACTGAAGTGATCGCTTCATATGTGCTCGATTTCAGAT
ATTTTATGATTTACTCAATACAAGAGGCGGGGTTAGTGAGAAAATGTTTC
GCCCACGTATACTGTAATTTAAAAGTTGATCGACCGCAAGCTATGGCAGT
TGTATTGTTTCCTTCGCAGCTTTCGTAGATTAAAGGTATTTTTTTACATA
AGTGTTCCCGTTTCATATAAGACACATACTTAATATCAGGACAGTGTCTG
CCTATTGTTATATTGTGCTGATATAAATAACAAAAAAATGTTTCTCTTTT
CCTCTTTCTGACAAATCTTGCTCCACATTCGCGTCAATTCAATATCAAAA
AGCCTTTAAATTAAAGTTGATGAGTAAGCAAACGATATCACTCTTATTTA
AAAACAAAACCTTTAAAGAAATCGTCCTTCCACTTACCGTTAATACCACA
ATGCTGTGTTTCATAAAGTACACAAATGATATTTATCCTTTATTAACAGA
AATATTCTTTAACCCTCCTAATGGACGTAAAAATATATCAAAAATAGGTT
TCTTTTGCTAACCTTCAGATCATAGCTCAGAACCACTTCATTTTTACCCA
AAGCTTTCTCGTTTTTTTGGAAAGCTTTCCAACGGTATCAAAGTTTTGTC
TGAAACCCATTTTAAGGTCCGCAATCAATTTTTGAACTTTGAGAAGTCGG
AAAAACCTGAGAAAGTAATGTGATCTTCAGATAAACTGTATTTTAACTTT
TATTACAATTGATGTCAATATTTGTACCTAGACTGGTCTGGCAACTGGTA
TTTCTTTTTTCGTCTACGAAGAAACCTGCAAACTGTTGTCAAAATAAAGG
ATACAATTTATTTGGCAATGAATTACGCGAAATCTTTGATTTGATCAAAT
AATTCCATAACCCAAATTACATGCTACGAATGCTAAGGTTTTATGGATCG
TCACGAACAGAGTTAGCAGGTATTCATTTGTCAGAGAAAGCTTGAATATG
CTTACTTCAAGTAAAGGACACTCAAGTAAAAGGAAAATGGATGGCTCCTT
TAGCAAATATGGTTTATTTGTCATTCGTCGCAGATAATTCATTGAAAACT
TTTGCAAAGAATACTTAAGATTCTTTCTTAAGGACTCTGTTTAAAAATGT
TTTTGACGCGCAGGAAGACGACTCCAAGAAATCAAGTACTGCTCAAAGGT
CAATTACAGGAATTCAAATTGATGGACTGATTTGTTTTCTGAAATTATTG
TTATAATAGAATATTTTTTTAATAAACGCGTCCCTTTATTTTTTATCATT
CATACCGGAAAATAATTCAACTTATATGCTTCCGCGAT

Coding sequence (CDS) from alignment at scaffold_88:384485..388172-

>TCONS_00073227 ID=TCONS_00073227|Name=TCONS_00073227|organism=Clytia hemisphaerica|type=CDS|length=1134bp|location=Sequence derived from alignment at scaffold_88:384485..388172- (Clytia hemisphaerica)
ACTGGTCTGGCAACTGGTATTTCTTTTTTCGTCTACGAAGAAACCTGCAA
ACTGTTGTCAAAATAATTCAGAGAGTCCAGCGTCAAATCTCTGACATGTG
GTACAATAAGTGGAATCTTCGCAAAAGCTTTACTTCTACCAATTGATAAC
GTGAAGAAGAGATTACAAGTGCAAGGTTCTAAAGACTTCCAATCGTCTTA
CAAGGGTATGGTTAACTGTCTTCAAACTGTGATTCGTGAACAAGGAATAC
ATGCCTTGTATCGTGGTATCGTTCCTTCCGTGCTAAAGATGATTCCCAAC
TTGGCGTACGTTTTTCCGTATTGTGGATTGAACTTCTTGTTTTATGGCTT
GCTAAACAGGACATGGAACTTACTACAGACTGGTCTGGCAACTGGTATTT
CTTTTTTCGTCTACGAAGAAACCTGCAAACTGTTGTCAAAATAATTCAGA
GAGTCCAGCGTCAAATCTCTGACATGTGGTACAATAAGTGGAATCTTCGC
AAAAGCTTTACTTCTACCAATTGATAACGTGAAGAAGAGATTACAAGTGC
AAGGTTCTAAAGACTTCCAATCGTCTTACAAGGGTATGGTTAACTGTCTT
CAAACTGTGATTCGTGAACAAGGAATACATGCCTTGTATCGTGGTATCGT
TCCTTCCGTGCTAAAGATGATTCCCAACTTGGCGTACGTTTTTCCGTATT
GTGGATTGAACTTCTTGTTTTATGGCTTGCTAAACAGGACATGGAACTTA
CTACAGACTGGTCTGGCAACTGGTATTTCTTTTTTCGTCTACGAAGAAAC
CTGCAAACTGTTGTCAAAATAATTCAGAGAGTCCAGCGTCAAATCTCTGA
CATGTGGTACAATAAGTGGAATCTTCGCAAAAGCTTTACTTCTACCAATT
GATAACGTGAAGAAGAGATTACAAGTGCAAGGTTCTAAAGACTTCCAATC
GTCTTACAAGGGTATGGTTAACTGTCTTCAAACTGTGATTCGTGAACAAG
GAATACATGCCTTGTATCGTGGTATCGTTCCTTCCGTGCTAAAGATGATT
CCCAACTTGGCGTACGTTTTTCCGTATTGTGGATTGAACTTCTTGTTTTA
TGGCTTGCTAAACAGGACATGGAACTTACTACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045423XLOC_045423Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073227-proteinTCONS_00073227-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073227-exon-scaffold_88-1575043694:388103..388172TCONS_00073227-exon-scaffold_88-1575043694:388103..388172Clytia hemisphaericaexon
TCONS_00073227-exon-scaffold_88-1575043694:386498..386589TCONS_00073227-exon-scaffold_88-1575043694:386498..386589Clytia hemisphaericaexon
TCONS_00073227-exon-scaffold_88-1575043694:386071..386292TCONS_00073227-exon-scaffold_88-1575043694:386071..386292Clytia hemisphaericaexon
TCONS_00073227-exon-scaffold_88-1575043694:384485..385041TCONS_00073227-exon-scaffold_88-1575043694:384485..385041Clytia hemisphaericaexon
TCONS_00073227-exon-scaffold_88-1510915933:388103..388172TCONS_00073227-exon-scaffold_88-1510915933:388103..388172Clytia hemisphaericaexon
TCONS_00073227-exon-scaffold_88-1510915933:386498..386589TCONS_00073227-exon-scaffold_88-1510915933:386498..386589Clytia hemisphaericaexon
TCONS_00073227-exon-scaffold_88-1510915933:386071..386292TCONS_00073227-exon-scaffold_88-1510915933:386071..386292Clytia hemisphaericaexon
TCONS_00073227-exon-scaffold_88-1510915933:384485..385041TCONS_00073227-exon-scaffold_88-1510915933:384485..385041Clytia hemisphaericaexon
TCONS_00073227-exon-scaffold_88-1491911889:388103..388172TCONS_00073227-exon-scaffold_88-1491911889:388103..388172Clytia hemisphaericaexon
TCONS_00073227-exon-scaffold_88-1491911889:386498..386589TCONS_00073227-exon-scaffold_88-1491911889:386498..386589Clytia hemisphaericaexon
TCONS_00073227-exon-scaffold_88-1491911889:386071..386292TCONS_00073227-exon-scaffold_88-1491911889:386071..386292Clytia hemisphaericaexon
TCONS_00073227-exon-scaffold_88-1491911889:384485..385041TCONS_00073227-exon-scaffold_88-1491911889:384485..385041Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_88supercontigscaffold_88:384485..388172 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.13973	3.94619	1.67647	1.53467	0.845834	0.59025	0.23057	1.01766	0.455639	0.752528	0	0.777311	1.14881	1.28708	1.63039	1.9126	1.96613	1.61029	0.938255	0.213575	0.858793	0.662137	2.63322	2.80996	0.326265	0	0.796687	1.284	1.56365	3.12581
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR023395Mt_carrier_dom
IPR018108Mitochondrial_sb/sol_carrier
Blast
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BLAST of TCONS_00073227 vs. Swiss-Prot (Human)
Match: TPC (Mitochondrial thiamine pyrophosphate carrier OS=Homo sapiens GN=SLC25A19 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.609e-22
Identity = 50/154 (32.47%), Postives = 87/154 (56.49%), Query Frame = 1 
Query:   10 SLHILIKSTAQESGIRTFYQGMIPNLAYVFPYCGLNFLFYGLLNR--TWNLLQF--RESSVKSLTCGTISGIFAKALLLPIDNVKKRLQVQGSKDFQSS------YKGMVNCLQTVIREQGIHALYRGIVPSVLKTGLATGISFFVYEETCKLL 441
            +L   + +  +  G + FY+G+ P L  +FPY GL F  Y  L     W +     +  ++++L CG+ +G+ +K L  P+D  KKRLQV G +  +++      YKG+++C + V++++G    ++G+ PS+LK  L+TG  FF YE  C + 
Sbjct:  157 TLRHAVGTMYRSEGPQVFYKGLAPTLIAIFPYAGLQFSCYSSLKHLYKWAIPAEGKKNENLQNLLCGSGAGVISKTLTYPLDLFKKRLQVGGFEHARAAFGQVRRYKGLMDCAKQVLQKEGALGFFKGLSPSLLKAALSTGFMFFSYEFFCNVF 310
The following BLAST results are available for this feature:
BLAST of TCONS_00073227 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TPC4.609e-2232.47Mitochondrial thiamine pyrophosphate carrier OS=Ho... [more]
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