TCONS_00072942 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072942
Unique NameTCONS_00072942
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1362

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072942 ID=TCONS_00072942|Name=TCONS_00072942|organism=Clytia hemisphaerica|type=transcript|length=1362bp
GATCTACAACACTGCTATTTATAAACCATTGGTTTCGTACATCAAAGCGG
TTGATTGGTATGTTATCGCTTCACTATTCATGATCGTTGCAAGTGTAATC
GAAAGTGTCCTTGTTTACTGGCTCCTTCATCgtaaacaaaagaaacagaA
AGAACAGAATTCATTCGAGAGATTCGATCGCTATTTGGACAAGAAGTTTA
ACATGAACAACTCTTTTTTACCATTACCTTTACTACAAGGTGGTGCCCAG
GCCGCTGGGATAAGCATGCCCAATCTCCCGTCGCTTGGCAACAATCAAAA
ACCGTTTTACCCTCGAATGACGTCCTTACAAGAACTCAATGAGAAACCCA
AGCCGAATGGGATTAATCCGAAAAAACCAATCTTCGCTAAATTGGAAGAA
GATGAAGATATCGACGAATCCGATAAAAACGGGGAAACCAATTTCTGCAG
CGAAAAGGATCCATTGACGAAACCGGTAATTAGAAATCGGGTTAACAGTA
AGTTTAATTATCATCGGGATAGCCTTATGGAACAGCGCGAAAAGAAAAAA
TCGGATGAAAGTGAGGAAAGTGAGTCTAAACAGTATAATCCGAATTTGGA
TAAAATTTCGAAATTGGATATTTTCGCTCGGACAGTATTCCCTTTATTTT
ACGTGATTTTTACGTTAGCTtactttatttatttctttggcacaaaataa
tgagaaataatctAGAGAAAAACTTGATGATGCCATTTGGGGGAGTATAT
TGAACTTTTTACTCAAGTTACTTTGAGAGAAGGTTGCTGCGAAGACTCGC
TACAGAGATGAGACAATCATAGAATATTTCAATCTATGAGTTGCCATCTG
AACTTAGCGTACATGAAAATACTAAAGAATGAAAGCATTCTGGACATTTT
TGACTGGAACATGCAATGGTATAGAAAGGACGTGGTCGCCGCGTTCGATA
TGGAGAATCTGTCGACTTTATGTGGAAATATCCTCATATGAAATTGAAGA
TAATTAGAGGTACACACATACAACAATATGGTCTAATAAACTGTGACTTT
GAAAATCGGATCATTTCCTAAAtgctttattttttactttcaaaatatcG
TAAAAgtatatacagttgacgctctctaattcgacgttctactattcgat
aggctcccttatacgatgaaatttaaaatctccgtcaacaagaaactctc
ataaacgacgctcccttattcgataagctcccttattcgatgaaaatcca
attccccttgaagatcgaattggagagcgtcaactgtattacaGAGAAAA
TTATATCAAGATTATTGTTATAACATTCGAAACGATATTTGGTGACAAAT
ATAATCTCGGAC
Run BLAST on NCBI

transcript from alignment at scaffold_86:1084585..1086507+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072942 ID=TCONS_00072942|Name=TCONS_00072942|organism=Clytia hemisphaerica|type=transcript|length=1923bp|location=Sequence derived from alignment at scaffold_86:1084585..1086507+ (Clytia hemisphaerica)
GATCTACAACACTGCTATTTATAAACCATTGGTATGGTAATGTGTTTTTC ACCTACTATAACACTCCTTTGAATGGCCTACATATCTTTTACTCACTCCT ATTAATCAACTATTTCTGTTTCATCCAGGTTTCGTACATCAAAGCGGTTG ATTGGTATGTTATCGCTTCACTATTCATGATCGTTGCAAGTGTAATCGAA AGTGTCCTTGTTTACTGGCTCCTTCATCgtaaacaaaagaaacagaAAGA ACAGGTGCATACgaatttcatatttcaaaaaatggagGATCTTCCCCCGA ACTCATTCTTTTATATTAGAACTTAATTTGAGCTGAGCCTATAATGCTTT TGGAAATCCTGAAATTCATTCACTTGAATATGAAGAAAGCAATGTTAAAG AAAgaacttttaatgaaaaccaaaacctttccaaaagaaaatatttaaca actgaacccaaaactagcgaaaccaatcccaagaaaaatatacaaaaaaa tcaATGGTAAAGATCATTGATCgaaatagttcaaaacaaatgCTCGAATA CTACCACTATTCAATGGAATTAAAAAtaggttttgtgcttgttggaGAGC TAttcaggagtggaatattattaaATAGataactttaaaaataaaatgga gaGTGAAGAAGACAGAATTGTTTACTATAAAGTTATAAATCTAATGTAAA ATCCGTTTTTGTTTTCAGAATTCATTCGAGAGATTCGATCGCTATTTGGA CAAGAAGTTTAACATGAACAACTCTTTTTTACCATTACCTTTACTACAAG GTGGTGCCCAGGCCGCTGGGATAAGCATGCCCAATCTCCCGTCGCTTGGC AACAATCAAAAACCGTTTTACCCTCGAATGACGTCCTTACAAGAACTCAA TGAGAAACCCAAGCCGAATGGGATTAATCCGAAAAAACCAATCTTCGCTA AATTGGAAGAAGATGAAGATATCGACGAATCCGATAAAAACGGGGAAACC AATTTCTGCAGCGAAAAGGATCCATTGACGAAACCGGTAATTAGAAATCG GGTTAACAGTAAGTTTAATTATCATCGGGATAGCCTTATGGAACAGCGCG AAAAGAAAAAATCGGATGAAAGTGAGGAAAGTGAGTCTAAACAGTATAAT CCGAATTTGGATAAAATTTCGAAATTGGATATTTTCGCTCGGACAGTATT CCCTTTATTTTACGTGATTTTTACGTTAGCTtactttatttatttctttg gcacaaaataatgagaaataatctAGAGAAAAACTTGATGATGCCATTTG GGGGAGTATATTGAACTTTTTACTCAAGTTACTTTGAGAGAAGGTTGCTG CGAAGACTCGCTACAGAGATGAGACAATCATAGAATATTTCAATCTATGA GTTGCCATCTGAACTTAGCGTACATGAAAATACTAAAGAATGAAAGCATT CTGGACATTTTTGACTGGAACATGCAATGGTATAGAAAGGACGTGGTCGC CGCGTTCGATATGGAGAATCTGTCGACTTTATGTGGAAATATCCTCATAT GAAATTGAAGATAATTAGAGGTACACACATACAACAATATGGTCTAATAA ACTGTGACTTTGAAAATCGGATCATTTCCTAAAtgctttattttttactt tcaaaatatcGTAAAAgtatatacagttgacgctctctaattcgacgttc tactattcgataggctcccttatacgatgaaatttaaaatctccgtcaac aagaaactctcataaacgacgctcccttattcgataagctcccttattcg atgaaaatccaattccccttgaagatcgaattggagagcgtcaactgtat tacaGAGAAAATTATATCAAGATTATTGTTATAACATTCGAAACGATATT TGGTGACAAATATAATCTCGGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045252XLOC_045252Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072942-exon-scaffold_86-1491911889:1084585..1084615TCONS_00072942-exon-scaffold_86-1491911889:1084585..1084615Clytia hemisphaericaexon
TCONS_00072942-exon-scaffold_86-1510915933:1084585..1084615TCONS_00072942-exon-scaffold_86-1510915933:1084585..1084615Clytia hemisphaericaexon
TCONS_00072942-exon-scaffold_86-1575043694:1084585..1084615TCONS_00072942-exon-scaffold_86-1575043694:1084585..1084615Clytia hemisphaericaexon
TCONS_00072942-exon-scaffold_86-1491911889:1084713..1084838TCONS_00072942-exon-scaffold_86-1491911889:1084713..1084838Clytia hemisphaericaexon
TCONS_00072942-exon-scaffold_86-1510915933:1084713..1084838TCONS_00072942-exon-scaffold_86-1510915933:1084713..1084838Clytia hemisphaericaexon
TCONS_00072942-exon-scaffold_86-1575043694:1084713..1084838TCONS_00072942-exon-scaffold_86-1575043694:1084713..1084838Clytia hemisphaericaexon
TCONS_00072942-exon-scaffold_86-1491911889:1085303..1086507TCONS_00072942-exon-scaffold_86-1491911889:1085303..1086507Clytia hemisphaericaexon
TCONS_00072942-exon-scaffold_86-1510915933:1085303..1086507TCONS_00072942-exon-scaffold_86-1510915933:1085303..1086507Clytia hemisphaericaexon
TCONS_00072942-exon-scaffold_86-1575043694:1085303..1086507TCONS_00072942-exon-scaffold_86-1575043694:1085303..1086507Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_86supercontigscaffold_86:1084585..1086507 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.118142 0.177594 0.0654513 0.198006 0.0663545 0.0998435 0.0389506 0.112308 0.0165441 0.0273497 0.0631978 0.0587235 0.310982 9.34729e-10 0.0488193 0.035748 0.643962 0 1.22299e-07 0 0.103065 0.480754 0.474089 0.41184 0 0 0.53648 0 0.167587 0.123017
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072942 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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