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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072942 ID=TCONS_00072942|Name=TCONS_00072942|organism=Clytia hemisphaerica|type=transcript|length=1362bp
GATCTACAACACTGCTATTTATAAACCATTGGTTTCGTACATCAAAGCGG
TTGATTGGTATGTTATCGCTTCACTATTCATGATCGTTGCAAGTGTAATC
GAAAGTGTCCTTGTTTACTGGCTCCTTCATCgtaaacaaaagaaacagaA
AGAACAGAATTCATTCGAGAGATTCGATCGCTATTTGGACAAGAAGTTTA
ACATGAACAACTCTTTTTTACCATTACCTTTACTACAAGGTGGTGCCCAG
GCCGCTGGGATAAGCATGCCCAATCTCCCGTCGCTTGGCAACAATCAAAA
ACCGTTTTACCCTCGAATGACGTCCTTACAAGAACTCAATGAGAAACCCA
AGCCGAATGGGATTAATCCGAAAAAACCAATCTTCGCTAAATTGGAAGAA
GATGAAGATATCGACGAATCCGATAAAAACGGGGAAACCAATTTCTGCAG
CGAAAAGGATCCATTGACGAAACCGGTAATTAGAAATCGGGTTAACAGTA
AGTTTAATTATCATCGGGATAGCCTTATGGAACAGCGCGAAAAGAAAAAA
TCGGATGAAAGTGAGGAAAGTGAGTCTAAACAGTATAATCCGAATTTGGA
TAAAATTTCGAAATTGGATATTTTCGCTCGGACAGTATTCCCTTTATTTT
ACGTGATTTTTACGTTAGCTtactttatttatttctttggcacaaaataa
tgagaaataatctAGAGAAAAACTTGATGATGCCATTTGGGGGAGTATAT
TGAACTTTTTACTCAAGTTACTTTGAGAGAAGGTTGCTGCGAAGACTCGC
TACAGAGATGAGACAATCATAGAATATTTCAATCTATGAGTTGCCATCTG
AACTTAGCGTACATGAAAATACTAAAGAATGAAAGCATTCTGGACATTTT
TGACTGGAACATGCAATGGTATAGAAAGGACGTGGTCGCCGCGTTCGATA
TGGAGAATCTGTCGACTTTATGTGGAAATATCCTCATATGAAATTGAAGA
TAATTAGAGGTACACACATACAACAATATGGTCTAATAAACTGTGACTTT
GAAAATCGGATCATTTCCTAAAtgctttattttttactttcaaaatatcG
TAAAAgtatatacagttgacgctctctaattcgacgttctactattcgat
aggctcccttatacgatgaaatttaaaatctccgtcaacaagaaactctc
ataaacgacgctcccttattcgataagctcccttattcgatgaaaatcca
attccccttgaagatcgaattggagagcgtcaactgtattacaGAGAAAA
TTATATCAAGATTATTGTTATAACATTCGAAACGATATTTGGTGACAAAT
ATAATCTCGGAC Run BLAST on NCBI transcript from alignment at scaffold_86:1084585..1086507+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072942 ID=TCONS_00072942|Name=TCONS_00072942|organism=Clytia hemisphaerica|type=transcript|length=1923bp|location=Sequence derived from alignment at scaffold_86:1084585..1086507+ (Clytia hemisphaerica)
GATCTACAACACTGCTATTTATAAACCATTGGTATGGTAATGTGTTTTTC
ACCTACTATAACACTCCTTTGAATGGCCTACATATCTTTTACTCACTCCT
ATTAATCAACTATTTCTGTTTCATCCAGGTTTCGTACATCAAAGCGGTTG
ATTGGTATGTTATCGCTTCACTATTCATGATCGTTGCAAGTGTAATCGAA
AGTGTCCTTGTTTACTGGCTCCTTCATCgtaaacaaaagaaacagaAAGA
ACAGGTGCATACgaatttcatatttcaaaaaatggagGATCTTCCCCCGA
ACTCATTCTTTTATATTAGAACTTAATTTGAGCTGAGCCTATAATGCTTT
TGGAAATCCTGAAATTCATTCACTTGAATATGAAGAAAGCAATGTTAAAG
AAAgaacttttaatgaaaaccaaaacctttccaaaagaaaatatttaaca
actgaacccaaaactagcgaaaccaatcccaagaaaaatatacaaaaaaa
tcaATGGTAAAGATCATTGATCgaaatagttcaaaacaaatgCTCGAATA
CTACCACTATTCAATGGAATTAAAAAtaggttttgtgcttgttggaGAGC
TAttcaggagtggaatattattaaATAGataactttaaaaataaaatgga
gaGTGAAGAAGACAGAATTGTTTACTATAAAGTTATAAATCTAATGTAAA
ATCCGTTTTTGTTTTCAGAATTCATTCGAGAGATTCGATCGCTATTTGGA
CAAGAAGTTTAACATGAACAACTCTTTTTTACCATTACCTTTACTACAAG
GTGGTGCCCAGGCCGCTGGGATAAGCATGCCCAATCTCCCGTCGCTTGGC
AACAATCAAAAACCGTTTTACCCTCGAATGACGTCCTTACAAGAACTCAA
TGAGAAACCCAAGCCGAATGGGATTAATCCGAAAAAACCAATCTTCGCTA
AATTGGAAGAAGATGAAGATATCGACGAATCCGATAAAAACGGGGAAACC
AATTTCTGCAGCGAAAAGGATCCATTGACGAAACCGGTAATTAGAAATCG
GGTTAACAGTAAGTTTAATTATCATCGGGATAGCCTTATGGAACAGCGCG
AAAAGAAAAAATCGGATGAAAGTGAGGAAAGTGAGTCTAAACAGTATAAT
CCGAATTTGGATAAAATTTCGAAATTGGATATTTTCGCTCGGACAGTATT
CCCTTTATTTTACGTGATTTTTACGTTAGCTtactttatttatttctttg
gcacaaaataatgagaaataatctAGAGAAAAACTTGATGATGCCATTTG
GGGGAGTATATTGAACTTTTTACTCAAGTTACTTTGAGAGAAGGTTGCTG
CGAAGACTCGCTACAGAGATGAGACAATCATAGAATATTTCAATCTATGA
GTTGCCATCTGAACTTAGCGTACATGAAAATACTAAAGAATGAAAGCATT
CTGGACATTTTTGACTGGAACATGCAATGGTATAGAAAGGACGTGGTCGC
CGCGTTCGATATGGAGAATCTGTCGACTTTATGTGGAAATATCCTCATAT
GAAATTGAAGATAATTAGAGGTACACACATACAACAATATGGTCTAATAA
ACTGTGACTTTGAAAATCGGATCATTTCCTAAAtgctttattttttactt
tcaaaatatcGTAAAAgtatatacagttgacgctctctaattcgacgttc
tactattcgataggctcccttatacgatgaaatttaaaatctccgtcaac
aagaaactctcataaacgacgctcccttattcgataagctcccttattcg
atgaaaatccaattccccttgaagatcgaattggagagcgtcaactgtat
tacaGAGAAAATTATATCAAGATTATTGTTATAACATTCGAAACGATATT
TGGTGACAAATATAATCTCGGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072942-exon-scaffold_86-1491911889:1084585..1084615 | TCONS_00072942-exon-scaffold_86-1491911889:1084585..1084615 | Clytia hemisphaerica | exon |
| TCONS_00072942-exon-scaffold_86-1510915933:1084585..1084615 | TCONS_00072942-exon-scaffold_86-1510915933:1084585..1084615 | Clytia hemisphaerica | exon |
| TCONS_00072942-exon-scaffold_86-1575043694:1084585..1084615 | TCONS_00072942-exon-scaffold_86-1575043694:1084585..1084615 | Clytia hemisphaerica | exon |
| TCONS_00072942-exon-scaffold_86-1491911889:1084713..1084838 | TCONS_00072942-exon-scaffold_86-1491911889:1084713..1084838 | Clytia hemisphaerica | exon |
| TCONS_00072942-exon-scaffold_86-1510915933:1084713..1084838 | TCONS_00072942-exon-scaffold_86-1510915933:1084713..1084838 | Clytia hemisphaerica | exon |
| TCONS_00072942-exon-scaffold_86-1575043694:1084713..1084838 | TCONS_00072942-exon-scaffold_86-1575043694:1084713..1084838 | Clytia hemisphaerica | exon |
| TCONS_00072942-exon-scaffold_86-1491911889:1085303..1086507 | TCONS_00072942-exon-scaffold_86-1491911889:1085303..1086507 | Clytia hemisphaerica | exon |
| TCONS_00072942-exon-scaffold_86-1510915933:1085303..1086507 | TCONS_00072942-exon-scaffold_86-1510915933:1085303..1086507 | Clytia hemisphaerica | exon |
| TCONS_00072942-exon-scaffold_86-1575043694:1085303..1086507 | TCONS_00072942-exon-scaffold_86-1575043694:1085303..1086507 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_86 | supercontig | scaffold_86:1084585..1086507 + |
Blast
The following BLAST results are available for this feature:
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