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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072884 ID=TCONS_00072884|Name=TCONS_00072884|organism=Clytia hemisphaerica|type=transcript|length=900bp
GTGAAAAGAAACTAGAGACTGCATCGAAAAGTGTTCTTTGTTTGGAGAAG
AGATTAAACCAACGTGAAGTCGAGATTCGTGCTCGTTTGGAAGATATTTC
TgcacaaaagaagaaagaaaatgcGGACAAAGCTACTATCGAAAAACAAA
AGGTCTCTATGGAGAAAATCCAGAACGATTTGAAACGTGAAAAGAAGAGG
ATCGAATCTTTGATCCGTGAACGTAATGCATACAGAGATGAAgctCACAC
GAATAGCATACAAAAGATTGAAGCTAACAAAAAGCTTGAGGCTACTAAAG
AACACTTGCAAAAGGTAAAGAAAGAATATGAGTGTAAAATTGCTCAAATG
CAACCTATCCAAGAGACAAAGGCAGTGGGCAAGCAAAAGCAAAAGAAACg
aaagagaaaatcaaaacaggtTGCTTCCAACGACATCGAAGCAAACACAC
TTACTATTGCTACACAAACTAATAAAGAACTTACAAACCCACAAGAAGCA
AAGCGTAACGATTTAAACGAAGATCGACCAAAGAAGTCAGATCTAGATAA
TGGGAAGATTCAGAAAGTCGCTAAAGTACAAAAAAGttttgttcaACGAA
AAAGTCCATCAACAATATCTAAAAACATTGTAAGCAAATCAGACGTTATT
TTCGACCAACATGACAACGAAAGACCCTGGGGTGTATATGACACTTCACT
TGTCACCTTTTGTATCGGAATATGGTTTCTTCTCATCAAGGTCTGCAGCA
TTGTCACCAACGATGATTCACTCTGGTAGTGACGTCATCACCAAATTATA
CGTATACatttgtaaataattttctcaTCCTGGATTCTTTATACTACTTT
TTAccacttttttatatatataaattattttctaaaaactaacccaaaaa Run BLAST on NCBI transcript from alignment at scaffold_86:522674..524999+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072884 ID=TCONS_00072884|Name=TCONS_00072884|organism=Clytia hemisphaerica|type=transcript|length=2326bp|location=Sequence derived from alignment at scaffold_86:522674..524999+ (Clytia hemisphaerica)
GTGAAAAGAAACTAGAGACTGCATCGAAAAGTGTTCTTTGTTTGGAGAAG
AGATTAAACCAACGTGAAGTCGAGATTCGTGCTCGTTTGGAAGATATTTC
TgcacaaaagaagaaagaaaatgcGGACAAAGCTACTATCGAAAAACAAA
AGGTCTCTATGGAGAAAATCCAGAACGATTTGAAACGTGAAAAGAAGAGG
ATCGAATCTTTGATCCGTGAACGTAATGCATACAGAGATGAAGTAAGATC
TCAGCATTTTATTCTAATAAATTGACATCGATCAGAATCCAATTAAAATA
AATCTTTAGGAACTGAATAGCTAGGTTTTCCTTAAGAATAAATATTTATT
GAGTAaatcattttttgtttaaatgatTGTTGGTTAATCAGTATAAACGC
TACaatagagtctctttaactcgaacctctataactcgattaTCTCCTTA
ATTTTTATTGTCCCTCCAGTCAACAATGCtttaaaccttactccataact
cataATGTTCTTAACTCAAACACATTTGAGTAATGGAGGGTCAACTGGAC
TTACTGTGCTTCGTACACATCCAAATAAACTTTTACAATACAAAAtacga
gaaaaaaatataacaatataggcgaaaataaaaaaatgtagtgtttccgg
agtgcggaaaggaaaaaagctctcatgcggccggccggaaaatttttttt
tgctatttttNTAGTGTTTCCGGAGTGCGgtaaggaaaaaagctctcatg
cggccggccggaaaaatcttttttgctatttttgataacttaagatcatt
gaaatataactttaaagataacctttatgtaaaaatagtatggagtaagc
cctgaatactaatatCTCAACTACCAACAAAAGTCTGCAGCtgggtcaga
aaatttttttttttcacccggccagTTTCCGGAAACATActacatatttt
tattttcgcctaaggTATAGATCGATATTGATCGCAGGTATTGGGAATGT
TCCTCATCTAATAAAAACTTGTCTTTAGGCAACCAGTAATTTCTTTCGAA
CATTTCTAGAGGGGAGACCGTCTTGATTATGTCTGGgttatcaaaattat
atttaaatatttctttttaggctCACACGAATAGCATACAAAAGATTGAA
GCTAACAAAAAGCTTGAGGCTACTAAAGAACACTTGCAAACGGTTNAGAT
TGAAGCTAACAAAAAGCTTGAGGCTACTAAAGAACACTTGCAAAAGGTAA
AGAAAGAATATGAGTGTAAAATTGCTCAAATGCAACCTATCCAAGAGACA
AAGGCAGTGGGCAAGCAAAAGCAAAAGAAACgaaagagaaaatcaaaaca
ggtTGCTTCCAACGACATCGAAGCAAACACACTTACTATTGCTACACAAA
CTAATAAAGAACTTACAAACCCACAAGAAGCAAAGCGTAACGATTTAAAC
GAAGATCGACCAAAGAAGTCAGATCTAGATAATGGGAAGATTCAGAAAGT
CGCTAAAGTACAAAAAAGGTATCTAAGCTAATGATGAATAAATCGAACGA
TAGAATCTTGGACTACTATATAGTTCACCTGTTTCCTTTCTGCTTCTAGA
CATTTTCGATCACTGAATGCCcccccccttctcacagacccggtaggatt
tttccagCCAGTAgaggtaaaaataacggaccaaaactcaatggagattg
atattcccatgtttttaatTGCTGGGGAATTGAATTCCgttgttttcgag
ccagaaaattcagtggggatggaaaaaatagcacaatattttacagtgag
aatttgcttatctgattatttttagcggggacaaaaatttgagtagaatt
ttccaccggggacgatattttggctagtttttccagtgggaagggttccc
agtgggtctgtgagaagggattGTTGAATAGATCTTGCCTCGCAACCCTT
TTACAATGTCCAGATTGGTAAAGCTTGCTTTCCATTAAACATCATCACTA
ctgattttttagttttgttcaACGAAAAAGTCCATCAACAATATCTAAAA
ACATTGTAAGCAAATCAGACGTTATTTTCGACCAACATGACAACGAAAGA
CCCTGGGGTGTATATGACACTTCACTTGTCACCTTTTGTATCGGAATATG
GTTTCTTCTCATCAAGGTCTGCAGCATTGTCACCAACGATGATTCACTCT
GGTAGTGACGTCATCACCAAATTATACGTATACatttgtaaataattttc
tcaTCCTGGATTCTTTATACTACTTTTTAccacttttttatatatataaa
ttattttctaaaaactaacccaaaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072884-exon-scaffold_86-1491911889:522674..522915 | TCONS_00072884-exon-scaffold_86-1491911889:522674..522915 | Clytia hemisphaerica | exon |
| TCONS_00072884-exon-scaffold_86-1510915933:522674..522915 | TCONS_00072884-exon-scaffold_86-1510915933:522674..522915 | Clytia hemisphaerica | exon |
| TCONS_00072884-exon-scaffold_86-1575043694:522674..522915 | TCONS_00072884-exon-scaffold_86-1575043694:522674..522915 | Clytia hemisphaerica | exon |
| TCONS_00072884-exon-scaffold_86-1491911889:523794..523841 | TCONS_00072884-exon-scaffold_86-1491911889:523794..523841 | Clytia hemisphaerica | exon |
| TCONS_00072884-exon-scaffold_86-1510915933:523794..523841 | TCONS_00072884-exon-scaffold_86-1510915933:523794..523841 | Clytia hemisphaerica | exon |
| TCONS_00072884-exon-scaffold_86-1575043694:523794..523841 | TCONS_00072884-exon-scaffold_86-1575043694:523794..523841 | Clytia hemisphaerica | exon |
| TCONS_00072884-exon-scaffold_86-1491911889:523896..524191 | TCONS_00072884-exon-scaffold_86-1491911889:523896..524191 | Clytia hemisphaerica | exon |
| TCONS_00072884-exon-scaffold_86-1510915933:523896..524191 | TCONS_00072884-exon-scaffold_86-1510915933:523896..524191 | Clytia hemisphaerica | exon |
| TCONS_00072884-exon-scaffold_86-1575043694:523896..524191 | TCONS_00072884-exon-scaffold_86-1575043694:523896..524191 | Clytia hemisphaerica | exon |
| TCONS_00072884-exon-scaffold_86-1491911889:524686..524999 | TCONS_00072884-exon-scaffold_86-1491911889:524686..524999 | Clytia hemisphaerica | exon |
| TCONS_00072884-exon-scaffold_86-1510915933:524686..524999 | TCONS_00072884-exon-scaffold_86-1510915933:524686..524999 | Clytia hemisphaerica | exon |
| TCONS_00072884-exon-scaffold_86-1575043694:524686..524999 | TCONS_00072884-exon-scaffold_86-1575043694:524686..524999 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_86 | supercontig | scaffold_86:522674..524999 + |
Blast
The following BLAST results are available for this feature:
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