TCONS_00072884 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072884
Unique NameTCONS_00072884
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length900

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072884 ID=TCONS_00072884|Name=TCONS_00072884|organism=Clytia hemisphaerica|type=transcript|length=900bp
GTGAAAAGAAACTAGAGACTGCATCGAAAAGTGTTCTTTGTTTGGAGAAG
AGATTAAACCAACGTGAAGTCGAGATTCGTGCTCGTTTGGAAGATATTTC
TgcacaaaagaagaaagaaaatgcGGACAAAGCTACTATCGAAAAACAAA
AGGTCTCTATGGAGAAAATCCAGAACGATTTGAAACGTGAAAAGAAGAGG
ATCGAATCTTTGATCCGTGAACGTAATGCATACAGAGATGAAgctCACAC
GAATAGCATACAAAAGATTGAAGCTAACAAAAAGCTTGAGGCTACTAAAG
AACACTTGCAAAAGGTAAAGAAAGAATATGAGTGTAAAATTGCTCAAATG
CAACCTATCCAAGAGACAAAGGCAGTGGGCAAGCAAAAGCAAAAGAAACg
aaagagaaaatcaaaacaggtTGCTTCCAACGACATCGAAGCAAACACAC
TTACTATTGCTACACAAACTAATAAAGAACTTACAAACCCACAAGAAGCA
AAGCGTAACGATTTAAACGAAGATCGACCAAAGAAGTCAGATCTAGATAA
TGGGAAGATTCAGAAAGTCGCTAAAGTACAAAAAAGttttgttcaACGAA
AAAGTCCATCAACAATATCTAAAAACATTGTAAGCAAATCAGACGTTATT
TTCGACCAACATGACAACGAAAGACCCTGGGGTGTATATGACACTTCACT
TGTCACCTTTTGTATCGGAATATGGTTTCTTCTCATCAAGGTCTGCAGCA
TTGTCACCAACGATGATTCACTCTGGTAGTGACGTCATCACCAAATTATA
CGTATACatttgtaaataattttctcaTCCTGGATTCTTTATACTACTTT
TTAccacttttttatatatataaattattttctaaaaactaacccaaaaa
Run BLAST on NCBI

transcript from alignment at scaffold_86:522674..524999+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072884 ID=TCONS_00072884|Name=TCONS_00072884|organism=Clytia hemisphaerica|type=transcript|length=2326bp|location=Sequence derived from alignment at scaffold_86:522674..524999+ (Clytia hemisphaerica)
GTGAAAAGAAACTAGAGACTGCATCGAAAAGTGTTCTTTGTTTGGAGAAG AGATTAAACCAACGTGAAGTCGAGATTCGTGCTCGTTTGGAAGATATTTC TgcacaaaagaagaaagaaaatgcGGACAAAGCTACTATCGAAAAACAAA AGGTCTCTATGGAGAAAATCCAGAACGATTTGAAACGTGAAAAGAAGAGG ATCGAATCTTTGATCCGTGAACGTAATGCATACAGAGATGAAGTAAGATC TCAGCATTTTATTCTAATAAATTGACATCGATCAGAATCCAATTAAAATA AATCTTTAGGAACTGAATAGCTAGGTTTTCCTTAAGAATAAATATTTATT GAGTAaatcattttttgtttaaatgatTGTTGGTTAATCAGTATAAACGC TACaatagagtctctttaactcgaacctctataactcgattaTCTCCTTA ATTTTTATTGTCCCTCCAGTCAACAATGCtttaaaccttactccataact cataATGTTCTTAACTCAAACACATTTGAGTAATGGAGGGTCAACTGGAC TTACTGTGCTTCGTACACATCCAAATAAACTTTTACAATACAAAAtacga gaaaaaaatataacaatataggcgaaaataaaaaaatgtagtgtttccgg agtgcggaaaggaaaaaagctctcatgcggccggccggaaaatttttttt tgctatttttNTAGTGTTTCCGGAGTGCGgtaaggaaaaaagctctcatg cggccggccggaaaaatcttttttgctatttttgataacttaagatcatt gaaatataactttaaagataacctttatgtaaaaatagtatggagtaagc cctgaatactaatatCTCAACTACCAACAAAAGTCTGCAGCtgggtcaga aaatttttttttttcacccggccagTTTCCGGAAACATActacatatttt tattttcgcctaaggTATAGATCGATATTGATCGCAGGTATTGGGAATGT TCCTCATCTAATAAAAACTTGTCTTTAGGCAACCAGTAATTTCTTTCGAA CATTTCTAGAGGGGAGACCGTCTTGATTATGTCTGGgttatcaaaattat atttaaatatttctttttaggctCACACGAATAGCATACAAAAGATTGAA GCTAACAAAAAGCTTGAGGCTACTAAAGAACACTTGCAAACGGTTNAGAT TGAAGCTAACAAAAAGCTTGAGGCTACTAAAGAACACTTGCAAAAGGTAA AGAAAGAATATGAGTGTAAAATTGCTCAAATGCAACCTATCCAAGAGACA AAGGCAGTGGGCAAGCAAAAGCAAAAGAAACgaaagagaaaatcaaaaca ggtTGCTTCCAACGACATCGAAGCAAACACACTTACTATTGCTACACAAA CTAATAAAGAACTTACAAACCCACAAGAAGCAAAGCGTAACGATTTAAAC GAAGATCGACCAAAGAAGTCAGATCTAGATAATGGGAAGATTCAGAAAGT CGCTAAAGTACAAAAAAGGTATCTAAGCTAATGATGAATAAATCGAACGA TAGAATCTTGGACTACTATATAGTTCACCTGTTTCCTTTCTGCTTCTAGA CATTTTCGATCACTGAATGCCcccccccttctcacagacccggtaggatt tttccagCCAGTAgaggtaaaaataacggaccaaaactcaatggagattg atattcccatgtttttaatTGCTGGGGAATTGAATTCCgttgttttcgag ccagaaaattcagtggggatggaaaaaatagcacaatattttacagtgag aatttgcttatctgattatttttagcggggacaaaaatttgagtagaatt ttccaccggggacgatattttggctagtttttccagtgggaagggttccc agtgggtctgtgagaagggattGTTGAATAGATCTTGCCTCGCAACCCTT TTACAATGTCCAGATTGGTAAAGCTTGCTTTCCATTAAACATCATCACTA ctgattttttagttttgttcaACGAAAAAGTCCATCAACAATATCTAAAA ACATTGTAAGCAAATCAGACGTTATTTTCGACCAACATGACAACGAAAGA CCCTGGGGTGTATATGACACTTCACTTGTCACCTTTTGTATCGGAATATG GTTTCTTCTCATCAAGGTCTGCAGCATTGTCACCAACGATGATTCACTCT GGTAGTGACGTCATCACCAAATTATACGTATACatttgtaaataattttc tcaTCCTGGATTCTTTATACTACTTTTTAccacttttttatatatataaa ttattttctaaaaactaacccaaaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045229XLOC_045229Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072884-exon-scaffold_86-1491911889:522674..522915TCONS_00072884-exon-scaffold_86-1491911889:522674..522915Clytia hemisphaericaexon
TCONS_00072884-exon-scaffold_86-1510915933:522674..522915TCONS_00072884-exon-scaffold_86-1510915933:522674..522915Clytia hemisphaericaexon
TCONS_00072884-exon-scaffold_86-1575043694:522674..522915TCONS_00072884-exon-scaffold_86-1575043694:522674..522915Clytia hemisphaericaexon
TCONS_00072884-exon-scaffold_86-1491911889:523794..523841TCONS_00072884-exon-scaffold_86-1491911889:523794..523841Clytia hemisphaericaexon
TCONS_00072884-exon-scaffold_86-1510915933:523794..523841TCONS_00072884-exon-scaffold_86-1510915933:523794..523841Clytia hemisphaericaexon
TCONS_00072884-exon-scaffold_86-1575043694:523794..523841TCONS_00072884-exon-scaffold_86-1575043694:523794..523841Clytia hemisphaericaexon
TCONS_00072884-exon-scaffold_86-1491911889:523896..524191TCONS_00072884-exon-scaffold_86-1491911889:523896..524191Clytia hemisphaericaexon
TCONS_00072884-exon-scaffold_86-1510915933:523896..524191TCONS_00072884-exon-scaffold_86-1510915933:523896..524191Clytia hemisphaericaexon
TCONS_00072884-exon-scaffold_86-1575043694:523896..524191TCONS_00072884-exon-scaffold_86-1575043694:523896..524191Clytia hemisphaericaexon
TCONS_00072884-exon-scaffold_86-1491911889:524686..524999TCONS_00072884-exon-scaffold_86-1491911889:524686..524999Clytia hemisphaericaexon
TCONS_00072884-exon-scaffold_86-1510915933:524686..524999TCONS_00072884-exon-scaffold_86-1510915933:524686..524999Clytia hemisphaericaexon
TCONS_00072884-exon-scaffold_86-1575043694:524686..524999TCONS_00072884-exon-scaffold_86-1575043694:524686..524999Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_86supercontigscaffold_86:522674..524999 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.085736 0 0 0.0239971 0.14231 0.118589 0 0.406854 0 0.00897491 0 0 0 0.038139 0.0192197 0.0542749 0.0416548 0.118515 0.0637186 0 0 0 0.0588684 0.0312415 0.0598729 0.123111 0 0 0 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072884 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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