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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072790 ID=TCONS_00072790|Name=TCONS_00072790|organism=Clytia hemisphaerica|type=transcript|length=1692bp
ATCTTTTCGGTTTTCGATAATCTTAAATGCGCATGCGTGGGCGCacaaaa
acatcaacaaaagATTTCAGCGTGTCGACATTTTCTCGGAACGTAAAATC
ATAACATTTCTCAAAGTTTTGAGTTTTACGTCGAGTTTTCTTTCATATTT
CTGAATTTTGCCTTTAAAATGGAGAATTCTACAGCTACCCCTCAACAAGC
TGTCCAAGTCAATGCTTCACAGGCACATATAATCCAACAAGGAGGAACAA
CAACAGCCCCTATCCAAATCTTTGCCCAAGATGGAGGTGGAGCGGGCAAA
GCATTTTACATTATCGATCCTTCTCAAGTGACAAACGGTTTACAAATGAT
ATCAAATGCTGATCAAAGATTTGAACTTAACAGTGGAAGCACAACTACAG
CTTCTCCACAAACTTTGACTGCTGCTGCTAATGCTGGAGCTCAACAACAG
GCAAATCAAGCTACTGTAGTGTTAAACGGACAACAAGTGTTGGCGCAAAG
AGTTCCAGTTGCTATGGAAGCTTTAGATGAGCCACTATATGTTAACGCCA
AACAATACCATCGAATCATTAAACGTCGCCAAGCAAGAGCTAAACTTGAA
GCTGAaggaaaaataccaaaaactcGAAAGAAATACCTTCACGAATCAAG
GCACTTGCACGCCGTCCGTCGTAATCGAAGTATGGGTGGCCGATTTGTCG
GTAAACCGAACATGGACCTCGGCGCTGATGAGCCGGTAACACCGCGTGAA
CAATCGACCCTTTCGAACGTTACTCAACATTCGGTATCAGCTTTGCCCAC
AGCGACTATGCTACCCAGTCACACAATGattcagattcaaaataacattc
cTGTCATGTCTAGTACTGTACATAACACTGGTCCGGTACCTATAGTTGTT
TCGACTGCATCTGGACTGGCCAGTTCTTGAGATTTGAAATTAATGTAATG
TATTTTTTCGCAGTTGTAGTTATCTAGTCAGTTTTCTTGTAAACTGATAG
AGTTTAAAACTATCAACCCATGCGTCATCTGAGCTTGGGGTTTGAGTTTT
AGTCAACGGAATAATATCATGTCAAATCGGGTCAAATCTTTATCTTTCAG
TATTTGTCAAAGTAATGAATTCAGACAAATTTGATGTCATTTGACCATGG
TTTCTCGTGACCTATCTTCTCTTTCTGTACATGGATTAGAACTATTAATA
ACAGTAAAGAAANGTATCTTCTCTTTCTGTGCATGGATTAGAACTATTAA
TAACAGTAAAGAAAATTGCAGATTGCTCCACGATTTTCTAAACGAGACCT
AGAGTAATAACGTGTGGCTGAGACATATTTTTTCTCGACTTTTACAAGAT
GAGGATCTACTTCTTTCTTTGTTTCCAAGTGGAATTATCAGGTAGTTAGG
TATCAATCGTACCTAAAAAGTCATTCGTTTAATattataatttatgaaaa
aattaagaGAATTATTTAGTTTTTGAATCTTAGTAACAAATGAACACATT
GAGACATTGTTTGTTTCAGGTGAACTttttgtgaattattttttgtaaat
attgtaaatattataaatttttaaagtgcgcctctttttcattttttttt
ggttaAGAATTGTTTTAAGATTCAAGTAACTCTCCGTTACAGTTATAATA
CAGACAAACTGAAAGAAATTTCTACAATCCTCTAATTTTTCG Run BLAST on NCBI protein sequence of TCONS_00072790-protein >TCONS_00072790-protein ID=TCONS_00072790-protein|Name=TCONS_00072790-protein|organism=Clytia hemisphaerica|type=polypeptide|length=253bp
MENSTATPQQAVQVNASQAHIIQQGGTTTAPIQIFAQDGGGAGKAFYIID
PSQVTNGLQMISNADQRFELNSGSTTTASPQTLTAAANAGAQQQANQATV
VLNGQQVLAQRVPVAMEALDEPLYVNAKQYHRIIKRRQARAKLEAEGKIP
KTRKKYLHESRHLHAVRRNRSMGGRFVGKPNMDLGADEPVTPREQSTLSN
VTQHSVSALPTATMLPSHTMIQIQNNIPVMSSTVHNTGPVPIVVSTASGL
ASS Run BLAST on NCBI transcript from alignment at scaffold_84:140352..154322- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072790 ID=TCONS_00072790|Name=TCONS_00072790|organism=Clytia hemisphaerica|type=transcript|length=13971bp|location=Sequence derived from alignment at scaffold_84:140352..154322- (Clytia hemisphaerica)
ATCTTTTCGGTTTTCGATAATCTTAAATGCGCATGCGTGGGCGCACAAAA
ACATCAACAAAAGATTTCAGCGTGTCGACATTTTCTCGGAACGTAAAATC
ATAACATTTCTCAAAGTTTTGAGTTTTACGTCGAGTTTTCTTTCATATTT
CTGAATTTTGCCTTTAAAATGGAGAATTCTACAGCTACCCCTCAACAAGC
TGTCCAAGTCAATGCTTCACAGGCACATATAATCCAACAAGGAGGAACAA
CAACAGCCCCTATCCAAATCTTTGCCCAAGATGGAGGTGGAGCGGGCAAA
GCATTTTACATTATCGATCCTTCTCAAGTGACAAACGGTTTACAAATGAT
ATCAAATGCTGATCAAAGATTTGAACTTAACAGTGGAAGCACAACTACAG
CTTCTCCACAAACTTTGACTGCTGCTGCTAATGCTGGAGCTCAACAACAG
GCAAATCAAGCTACTGTAGTGGTGAGTTTTCGCCATAAATTTGGTACTAA
AATCGTGAAAAATGGCGCCGAAAAAACGAAAAACAAAACCTTTATTTTCA
GTCTTATTCTGTTTAAAATCTAGTCTGAACTATAAATGTTTTATTCCTAA
TTGGTTTTGAATTTTGATTGCTAAAATTCAAATTTTTTTGCTGTTTTTAT
GCTTTCCTTGTGTGCACCAATACTTTTTGAGTGTTTTGTAAATTGGTGTA
TGGTGATTGGCTGTTGTTTTCCTGAAGGCTCATTGGGTGTTGAAATCAAC
TAATAGGAAAGCAGCTTTGAGTAGCTAGTTACCAATCAGATTTTCTGTAA
ACCAAAATGTATGTTTTTGATTTAGTTTGTTGATTCTGTTGGCCTGAATC
ACTTTAGAGGGTTACTTCTTTCTAGTGAAATCCTTCATTTTTATTAAGAA
GTTATTATTTTTTGAAGGTTTTGATTCAAAATGAGCAAAATGGCCACTTT
AAGGAATTCTTCAGGTAATGATGTTGTTTCTTACAGACTTGTATGAGCTC
TTCCAGAGATAAAGTAGAAAAAATGGATGTGGATGGCCAATATTTTCAGT
CATAAGAAGCCCAGCCATAGTAAAATTTGTTTTAAAATGTCTCTAAAATT
CTAGATGTTTTTCATTTGAACCATACCTCCTCTGTTAAAGTAAAAGGCTC
TTTAGAGTTGAGTGCGGTACCATAAGTTAGTCTAATATTGACATCCCTCG
TCTTTCGTCCCTTCTTTAGAGACAGGACTAATATGAAAGCTTGAACCACT
GATTGAAAAAAGGATTATTCCTCTCTGATCACTTAGCAAAGAAAAACAGT
TTCAACCTTTCTATCAATTTTAGCTAATAAAAAGGTAGCCTGGGAATCCA
AGCGTTAAACTTTGTTCACAGTCTAGTTTATGATATATTTTTTTCTATGC
TTGTTTAACGCTTGGCGCAGGTAACTCGCCTGCAGGGAGATTTTTCCCTG
CAATGCAGGTTCGGCCTGATTGGCCAGCTTTGGGCGTATTAAGGTGGTCG
TTAACACTTCTGAGATAGGATCATCTTTTTCGGGTCGATTTTTCAATTTT
TGGTTTAAATTAAAGTTTGAACCTTGCTAAACAATATCCTGAAGTTTTAT
TTCATATAAAGAAGAGGAAAGTCGAAAACTTTAGGTCTTTAGACACGTAC
CTGAGCAGATTTTGTGGTCCGCCCCAAACGCCCGTCCCGCCGCCCGTCAC
GAAAATCGCAATATTAGCCCTTCTGGTTCTTGGAGCGACTCCAAATTTTT
ACTGTCGCTACTTAGAGCCACAAAGAACATTCCCGGAAAATTTTACACCG
GTACTGTTAATAGTTCCGGATTTATGACAATCGAAACAAACCCGCCATCT
TGAATCTTGTCAAATTTCAAGTGTGGATTATTGTTAAAGGGAATGGCTGT
TTCATGGCTTATTTTCTTGTAGTAAGTGATGGTTTGATGCTTCCTTTTTA
TATAAAGAGCTTCTCAAAACTCCAAGGAACATTTTTACTTGATAAACTTT
CTAATTTCCTTCCCATTGGGATCAAATTTCAGCGCCACACAAAATGTGTG
ACAGGTACGTGTAATTTCTTTTGTTTTCTCTCTCTCTTTTTAATTGTTTA
ATTCATAATTTATTGTTTAAAACGTCCATAACTTCTTCTTCAAGCTATCT
ATACACATTTAGTTGGATTTTGATAGTGATATAGTTGATTTTGGTGTATT
TCGGGGTTTTCGCAAAAGTGAAAGTGAAAGTGCTCTTTATTAGACTTGAG
CGCANNNTCCATAACCTCTTCTTGAAGCTATCCATACACATTTAGTTGGA
TTTTGATAGTGATATAGTTGATTTTGGTGTGTTTCGGGGTTTTCGCAAAA
GTGAAAGTGAAAAAAGTGCTCTTTCTTAGAATTGAGCGCAGCTTGTATTT
CAAGTAATAGGGATAAAGATTTGCTTTGTTACAGTGAGATGTGTTACTTT
AACCAATGAAAGGGTTAGGGAATACTTTTCAATCACTTTTCACCAAATTT
AAGCTTTTTCGCAAGCAAAAGTAAGGTTCACGCAACTTTTTTGTATGTTT
GCGGTAATCTCAGGGTTCTGCGCGACACCATAAATTTGCTGAAATATGCA
GAAGAAAATGGCTTTACTTTCTATCTTAAGGTCAAAATTGAATCAGTGCA
TCAAGTTTAACTGAAATCTGTCAAAATTCCCATATTGAAAGCTTTTTTTT
CCTCTCTCTACAGCAAAAAATAGTTTCAGGCCAGTTTACGCAAAACAGCA
AAACCGGGGGTTTTCAATCTTGTGGCGGAAGAATCTCAAGATTGGCTGGT
CCGATTTACTTGGAATTTTGTACACAGCTTTCTCTTAGTGCAAGGGGTGT
TTTGAGTGAAACAGATTTTTAAAAAAATGTTTTGTTGATTTCAAAATTAA
AAAAAACAGTTTTTTGCATTTTTACCCCCGGTTTTTGATTTTTTTTTAAA
AAATTTTCACTCAAAACACAGTAGGTCAATATTGTAACATAACTGCCAAA
TATCAAAATCTAACTCCATCTGGTTGTTGAGATTCTTCTGCCACAAGNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNGTATCATCATACAAAATTTCAACAATATATCATTTATAC
ATTTTGAGATATTTCAATTTGAATATTTTTTGACATTTTCAAAAAGTTTG
TTAACGACCACCTTAATTTATGGAAAAAGCCGTCTCTGCAGAAAAAAGGA
AAACAAATGAAAATGAAAACATAGATTCATTTAGAAACAAAATGGCTGTT
GGCTGGATGTCTAAATACATGTGGCTGATGTTTTGATGTGGTTTTTAGTA
GTTTTGAAAGTCTTTAGAGCTTGTTAAAGAGTTTTTATGGTAAGTTAATT
ATGTGTGTTTGCCTGGGTTTCCAAAGTTCAGAAAGTCTGTCGACAAGGGT
TCACACACAGACTGTTTATAACGTTCTGTGCCAGACTAATCTACCTGCAC
CAAGCTCTTCAATCTTAGAACTTTGTGAGGTGAGGTATTTTTGTTTTTTT
CTAAGATTTTGAGCTTGGATTCCCAGGCTAATAAAAGGGTGTCGGAATTA
GAAGAGGGATGTTGACATTAAACCAAGTTACGGTACCCAGCTGATGTGGA
TGATTATGTCCAGACGTTACTAATTGATAAAATTGATTGTCAATTAAAAT
TGATTGTCGATTAAAATTGATACCATGAGTGGTCCTAAATCCGACAGCCC
TGCCTAAATCCCATCCCCCAAATACCATGAGAGGTCCTAAATCCGACACC
ACTGCCTAATTCCGACCCCGCAAATAACTGTTATGAAAAAAAATTCTATG
TTTACAAACATTCCCTCTCTAAGTTGAACGATAAACTATTGCTAGAACTC
TCAAAACAAAACATCTAAAAAGATTACTATAATGTTAAGATGTCAATAAT
TAATGTGATCAAAAACGTGTGAGTTGTAAAAATAATTACCACCTTTATTC
TGTATTCTGAATCTATTACTCTTGTTTAACGTTAAACAATTCGGACAATT
TTGTAATAAAAAATTATTTTTGAATAAAAGCAATTATTGTTATTTGGTTC
AATTGGTTCAGTGTATCAAATTTCTCAGTTTAGTTGACACTTTGGTATCT
TCGTTGCGTTACAGCGAAAGGTTTGTTTTTATTTTAGTTTGCAGGCATCG
AAATAAGGGATAGAAGAAAGTGTATCGCAATTTTTTGATAAGCATGATTT
TGCATCCTAAAATGGATCAATTTTCAATTTTTAGCGTGTAAGTAATCCAA
AAACGCAATTTAATTATTAACAACTCATAGAAGTTTGAAAATCCATTTTT
CTGTTGTTTTTTTTGACGGACCAACCAAGTCATTCCTTTTTGGATAAAGA
TCATTCAATAATTGATGAGACAATTGTAATTACTTTTTAATTTTATGCTA
TTGAATGTTTTGATCTGAAAATAAAAGATGACAAAACATTAAAGAAAAGA
ATAAACTATCAATATCCTCCATCCCCCTCCAGTTTTCAGTTCCTTTGAAA
ATTTTATTGGGACTCATGCCCACTGTCCTGTTTCTGGCACATATCTACGT
GGTGCCTTACTAACACGTCGAGGTCTGGGAGGGGTNTATGCCCACTGTCC
TGTTTCTGCCACATATCTACGTGGTGCCTTACTAACACATCGAGGTCTGG
GAGGGGTGGATGAAGGCTCTTCAGATGATTTCTTCGGGGTGCCCATCGAT
GACGGCACTGCGTCTTTGGGTGTTCCAGGTTGCGTCGCTGGTACACTAAC
GGGAGGCAGGGGCGAGATGGGCTGTGGAGCAGCTGTAAGAGGTGGAATGA
CTGGTTCTCTTACAGGTGTAGCAGGCGGTAGAACAATCAGACTTGATGGC
AGTGGAGTCGACTGTTGTTGGGGTGGTCTAAATTGTTGCACGGTTCGTCT
CTGCAGGTTGGGATCGTCAGGTCTTGGCAGTTTGAGAGTTCTTCTTTGGG
AGTGGCGGCAATGGAGGTCCAACAAATGCGTCTCGGTTGGTGATGTCAAC
AGAGGCTGGTTCGAAACGTCGAAGGTAGCGTCGGTTGCAACGGGTTAGAC
GATCAGTGTCATCAGCTCTTTGATTGTGCCAGATCGGTCCCATCGTTTGG
GGTTGTTACCAGTCTGGTTCTGGATATAGCATCTGTCACCGAGGCGGAGG
TCAAGGAGCATGCGAGAGTGGTGGTTCCGCTCTTCAGCAGCATGATGGAA
TCTGTGACGTAGGGCTTCCTCTTTCTGTTGCCAAGCTGCGCGCCAGATAG
GACGGACATGTTCGTTGCTGAATTTATCAAGGCGATTGATGAATGCAAAT
GCGTCACGGATGGGACGACCAAATACTATCTCCGCAGGTGAAAGTTGACA
ATCAGGGTCAGGTGTGTTACGCAGTTGCATCATTGCCCTCAAAAAGCGGT
CAGTATCAAGCATTCCAGAAGGACCAGTGTTCGAACAAAGCAACCTCTTG
GCAGACTTGACCGGAACCTCAGCGTGACCGTTTGATTGGGGATTGTAGAC
TGATGAGAGTCTGTGTCTGACACCCCAGCGCTCCAAGAAATCTTGAGTCA
ATCCAGACATGAATTCAGGGCCACCATCACTTGACATTTCCTCTGGTACA
CCGAATCAGGCAAAGTAGTTTCGTAGACACGTGATGAGTCCTTCAGATCC
AGCTTGTGGTGATCCTTTTGGGGCTTGGAAGACATCGCCAACTACGAGGT
AGTGCTGTCCAACGCAGTCAAAGAAGTCAGCATAGCTTTGTTCGAATGGA
GTTGTTGATGGTGAGGCTGGCGAGGTAGGTAGGGAGTGGGATGGTGCATT
ACGGATACACTCTTGGCAGGCTTGTCTGCGATGCTCAATGTCATAAGTCA
TCCCTGGCCAGAAGACGATGGAACGTGTACGCAGACCCATGGTTGATACG
GTGGGCGGCATGAAGGGCATCAAGGACTGCAGGTTGTAACGATTGTGGAA
TAACAACACGATCATTGTAGATGATGACACCATCTGTGATGTGAAGACTG
TCACGGTACTGCCAGTAAGATGAAGTAGCGTGGTGGTCACGATAGTTTTC
GGGGAAGCTGGCAAGAACAGCTTGGTATACGAGGGCAAGATTCTGATCGT
TTTGGGTTTCGGATGACAAGCATTCCAGGTGATCGAGGTGACCTTTTCAG
CATCGTTGCGGATGGCAGCAGCCACCATGAACTCGGGCAGCATGTGATCA
GGTAACTCCTCCTCATTGGATGGTGATGGGTGGCGAGATGTAGCATCAGG
GGCAAGATTGGTCTTCCCTGGGACATGAATGACACCAAAGTACCAGGGCA
GGCTCCTTTCTTTCAGGCGAAAAAGTCGTGTGTTGTGAATTTCATCTAAA
GTTCTGTCACCATATATTTTAATAAGAGGCTTGTGATCGGTAGCTACAGT
CAATACACCGTTTAACAGTCTCGCCATCTCCACCGAGAAGCGGTAGGTAA
AAATGCTCACTTTAGTACTGTGGAAGGTTAGAGAAATGTAAACATTGCCT
TTTTTTTCTTTCCTTTAAAGAGAATGTTTTAGATGTTTGAACATGACAAT
TTTATGTATCTCTCCTGAAAATTTCACAAAAATTCATCTAGAGGAAAAGA
AGTCATGATTGAAAGGAGTTCTTTACCTACCATTTCTCTGCTGGGTTTTC
TTATGAGAACTGGATGTTTACCTACCATTTTTTACGGGGGAGAGTGAAGT
TTCCCATGATTGCCAAAATCAAAACAATGGAAAATTGTTCTTACACATGC
GCAGTCGACACTGTTAAACGGTGTATTGANGTTGCCAATATCAAAACAAT
GGAAAATTGTTCATACGTGTGCGCAGTCGACACTGTTAAACGGTGTATTG
ATCACAACCTAAGGTGAAGTATTTCGTTTGTTTCAGCCCCCAGGTGATCG
CGAGGGCCTCACTTTCAATCTTTCAATTGGTGCGTAGTGTTCCTCAGTTG
GCTTGAGGAAACGGGATCCAGCCAAAGTAATACGCCAGCCATCCTGACAG
CAGTTTGGCTTGTCGTCTGCACAGTCACAATATTTTTGTTGTAAAAAATA
GCCAACGCCACGCTTCGACCAGTCCATGCGGAGACACATAGGTAGGTGGA
GGTCGAATATTTCAACACCTGATCGAATAGCTTCAACAATGGCTTTCTTT
GACGCTGTGAAGGCACGATCAAGCTCAGGGGTCCATTTGAATGGATGTTT
TGGAGAGAGAAATGGACAGAACGGTTCTATGTGTTCACGGAGCTGTGCGT
AATTCCCCACCTGGTTGTAGTGCTGATGGGCGTTGGGAAATTCTCTATGG
CATTGTAGAATTTTGGGAGTGGTTCTATTCTCTCATCTGAGATGCGGAAT
CCGGCAAAGTCAACGGCTCTGCCAGCGAATTGAAACTTTTGCGGGTTGAG
CACGATTCCTGAACGACCAACTGTTTTGAGGAAGTCGATTGTTTGCCACC
AGTGTTCTTCCAGACAGATAAAAAGATTCACTAAAGTCTGTCTCAAAATA
ATTTGCAGCTGGAGACAAAAATGGCTGTAACTTTTGATAGAATTCGAATC
AAGTTGCGATTGTGTGCTCGTTAAAAAGATTTTCGTGAGTGGAATATTAT
CAAGTAAAAAATTTGAAAAAAAATGAAAAATGAAAATGAAAAATGAAGAA
GAAAAAAATCAATTTCTTGTAGAAATGTGGTATAATTACCATTTTCATAG
GAGTGATTCTTCAATCTTAGATCATCATCACTGTCAAAAAAAAATTCAAA
AATATTCATTCAATCAAAAGATACCTTAAGGGAAGAAATTTTTGCGAGAA
GAAATTTTCGCGGAATTTAATTTCGCGAATCAGAGTTTCAAAATGGCAAA
TTTCGCGGAATTTAATTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTTGATGCACAAAGGTT
TCTAGACGACTAAAATTGTTCCATTCATTACTTTTTGCTTTATTTCTACT
ATGTATAAATTAGTCGTCTAGCTTGCTAGACTAACTTAAATTAACTTTTA
ACCATCACTGAGTTATTTATATTTGTTTATATTTGATAAGAAATACACGT
TATAATGCTTAAAAATCAATTGTGTCCATATTTTTTGGTAATACCTGGTC
AAAAACAACAAAATAAAAGAAGAAGAAAAAAAATCGAATTTCGCGGAATT
TAGTTTCGCGATTTAACAATTTTGGTGTGTTTCGCGGAATTTAATTTCGC
GAATTACACCCAAATTCGCGAAATTAAATTCCGCGAAAATTTCTTCCGCG
AAAATTTCTTCTCGCGAAAATTTCTTCCCTTAAGGTATCAAACAAAGTTT
ATTGCTGGTTGAGTCTATAAACTAGTAAAAAACGAAAAAAAACAGCCTTT
TGTCGATTGTAATTACTTTTTAATTTTATGCTATTGAATGTTTTGATCTG
AAAATAAAAGATGACAAAACATTAAAGAAAAGAATAAACTATCAATATCC
TCCACTTTGGCCTAAAGACAATGCAATTTTAAAAAACGGGGGCACCTAAT
TGCTGGGGGTTTTGAAATTGTACTTCTGAAAACCCAAAAATAAGATAAAT
ATAGGCTAAAATCAGGCTATTTAGAGCAAAATAAGGGGCCTTCTCATTGA
CAGCTGAAAATATTCTTAAAATTAATACTTATTTTGTTTCCGGTCCGTTG
GCCGGGTGAAAATCTCTACCAAATTATAAAAAAAATTTCTGAGTTTTATA
CAATTTCCCATTTAAACATTTTCTACACTCAAGTGATCCAGAAACTTTCC
CCCATCTTATCGATTTCACTTTTCAAATTTTAAATCAGAATTCCTAATAT
GAATTATGCTAGGCTTGAAGTGAAGTAGCATCGTCATGTATTCTGTCAAG
TGACTGGCTGCCCGCAGGACTTTTTTCATCACTCTGAGGTCCAGAAAGAT
AAAATCTCTTACAGTCGGTATAAAAACTTTTTTTTTTCTGTTAGCCTAAG
GGAAAGTAGGTTTCTGATTCTAACTTTTGATATTGATCTTTGTTTGGCAA
AATATTTCCAGGGTGTTGCGTTAACATTAAAAGTAACAAACTTAAATACA
GTAGACTCTTAAATTCTGACGTCAGCAGACGTCAGTAAAATTTCCGAAAA
AACGTTTGCCTGAAATATGCTGATGACAGCAAAAGAAATTAAATTGGTGT
GTTTCAGGCATCAATGCAGGCTCCTTTTTTATGTTATATTGAAAATTTCC
ATTTTTTTAGTTTTGAAAATTTTATTCATCCACGAAAGAATTTTATTTTT
TGCTTTTTTCACATTTATATTTTCCTTGAAAAAAGTAAGGTGTTCGAAAA
GTAAGGCTTGTGCAAAAAAAACTATTTCAAGAACTGCGCAAAATTATAAA
AGTTAATTGGATTATGGTAGCTCTCTTATTTCAGCATTAAAATTTTAATA
TCTTTTGCTACTAGATCAGGCACTTGAGATACTACAAGTATTCAATTGTC
ATGCTAACAAAAACATTATTGAATTTTGCTTAGGTGTTTCATTCAAGTGT
GTGGAGTGAGAAAAGGAATTTAAACTAAACAAAGTAGAATCTTTTATGCC
ATTAAATTTGGTAAGGAGATACCATCGTTTTTTCATAAGATTCTACTTCC
TGCCCTGAGATTCGACTAACTTGTCTAGCTGAAAAATGAACTTCGGAAAA
TTAGACAGTTTCGTCAGTCAGCACAAGATTTTCCTTACCTTGAGAAAAAA
ATCTTTTCCAATCTTATACCGGTTATCCTGGGGAAAAATCCCTGAAAAGT
CTGTATAATCTGAGTAGGGGAAGTTAAATCTTATGCAAAACGAGGGTAGA
ATCAAAATATGAATAGTGCAATATTTTAACAATTCATCTTGAAACGGTTG
GAGTGAAGGAAACATAAATTTACTCATCTCTATTACAGTTAAACGGACAA
CAAGTGTTGGCGCAAAGAGTTCCAGTTGCTATGGAAGCTTTAGATGAGCC
ACTATATGTTAACGCCAAACAATACCATCGAATCATTAAACGTCGCCAAG
CAAGAGCTAAACTTGAAGCTGAAGGAAAAATACCAAAAACTCGAAAGGTA
TCAATTATATCTCCTTAAGGATATTCTTTATTTTTTTGATATTATTAGTC
TTACATTCTTGTAAATCTTGTTTTGTTTTGAGTGAATAATGATTTATTTC
CAAAGGTTATTCCACATACAATATATTTTATTTATGTATATGCAATGGTT
TACAACAAATGATTTTATAGAATGTTTTTCATCCTCATAAGGCGATTACT
GAGCCCTGTAAGGAGAAATTATCTTGTGAAAGCTTTAGTTTGACATAAAA
CGTCCTTTCCCTAAGTCTTTTGTCTGTAGATTGTAAAGATGGTCTTCAAC
TCTACTTGCTATTGAGAGATTTGAAAGATTTTTATTTGATTCATTCTTTT
TGTTCGTAGAAATACCTTCACGAATCAAGGCACTTGCACGCCGTCCGTCG
TAATCGAAGTATGGGTGGCCGATTTGTCGGTAAACCGAACATGGACCTCG
GCGCTGATGAGCCGGTAACACCGCGTGAACAATCGACCCTTTCGAACGTT
ACTCAACATTCGGTATCAGCTTTGCCCACAGCGACTATGCTACCCAGTCA
CACAATGATTCAGATTCAAAATAACATTCCTGTCATGTCTAGTACTGTAC
ATAACACTGGTCCGGTACCTATAGTTGTTTCGACTGCATCTGGACTGGCC
AGTTCTTGAGATTTGAAATTAATGTAATGTATTTTTTCGCAGTTGTAGTT
ATCTAGTCAGTTTTCTTGTAAACTGATAGAGTTTAAAACTATCAACCCAT
GCGTCATCTGAGCTTGGGGTTTGAGTTTTAGTCAACGGAATAATATCATG
TCAAATCGGGTCAAATCTTTATCTTTCAGTATTTGTCAAAGTAATGAATT
CAGACAAATTTGATGTCATTTGACCATGGTTTCTCGTGACCTATCTTCTC
TTTCTGTACATGGATTAGAACTATTAATAACAGTAAAGAAANGTATCTTC
TCTTTCTGTGCATGGATTAGAACTATTAATAACAGTAAAGAAAATTGCAG
ATTGCTCCACGATTTTCTAAACGAGACCTAGAGTAATAACGTGTGGCTGA
GACATATTTTTTCTCGACTTTTACAAGATGAGGATCTACTTCTTTCTTTG
TTTCCAAGTGGAATTATCAGGTAGTTAGGTATCAATCGTACCTAAAAAGT
CATTCGTTTAATATTATAATTTATGAAAAAATTAAGAGAATTATTTAGTT
TTTGAATCTTAGTAACAAATGAACACATTGAGACATTGTTTGTTTCAGGT
GAACTTTTTGTGAATTATTTTTTGTAAATATTGTAAATATTATAAATTTT
TAAAGTGCGCCTCTTTTTCATTTTTTTTTGGTTAAGAATTGTTTTAAGAT
TCAAGTAACTCTCCGTTACAGTTATAATACAGACAAACTGAAAGAAATTT
CTACAATCCTCTAATTTTTCG Coding sequence (CDS) from alignment at scaffold_84:140352..154322- >TCONS_00072790 ID=TCONS_00072790|Name=TCONS_00072790|organism=Clytia hemisphaerica|type=CDS|length=2286bp|location=Sequence derived from alignment at scaffold_84:140352..154322- (Clytia hemisphaerica)
AAATACCTTCACGAATCAAGGCACTTGCACGCCGTCCGTCGTAATCGAAG
TATGGGTGGCCGATTTGTCGGTAAACCGAACATGGACCTCGGCGCTGATG
AGCCGGTAACACCGCGTGAACAATCGACCCTTTCGAACGTTACTCAACAT
TCGGTATCAGCTTTGCCCACAGCGACTATGCTACCCAGTCACACAATGAT
TCAGATTCAAAATAACATTCCTGTCATGTCTAGTACTGTACATAACACTG
GTCCGGTACCTATAGTTGTTTCGACTGCATCTGGACTGGCCAGTTCTTGA
TTAAACGGACAACAAGTGTTGGCGCAAAGAGTTCCAGTTGCTATGGAAGC
TTTAGATGAGCCACTATATGTTAACGCCAAACAATACCATCGAATCATTA
AACGTCGCCAAGCAAGAGCTAAACTTGAAGCTGAAGGAAAAATACCAAAA
ACTCGAAAGATGGAGAATTCTACAGCTACCCCTCAACAAGCTGTCCAAGT
CAATGCTTCACAGGCACATATAATCCAACAAGGAGGAACAACAACAGCCC
CTATCCAAATCTTTGCCCAAGATGGAGGTGGAGCGGGCAAAGCATTTTAC
ATTATCGATCCTTCTCAAGTGACAAACGGTTTACAAATGATATCAAATGC
TGATCAAAGATTTGAACTTAACAGTGGAAGCACAACTACAGCTTCTCCAC
AAACTTTGACTGCTGCTGCTAATGCTGGAGCTCAACAACAGGCAAATCAA
GCTACTGTAGTGAAATACCTTCACGAATCAAGGCACTTGCACGCCGTCCG
TCGTAATCGAAGTATGGGTGGCCGATTTGTCGGTAAACCGAACATGGACC
TCGGCGCTGATGAGCCGGTAACACCGCGTGAACAATCGACCCTTTCGAAC
GTTACTCAACATTCGGTATCAGCTTTGCCCACAGCGACTATGCTACCCAG
TCACACAATGATTCAGATTCAAAATAACATTCCTGTCATGTCTAGTACTG
TACATAACACTGGTCCGGTACCTATAGTTGTTTCGACTGCATCTGGACTG
GCCAGTTCTTGATTAAACGGACAACAAGTGTTGGCGCAAAGAGTTCCAGT
TGCTATGGAAGCTTTAGATGAGCCACTATATGTTAACGCCAAACAATACC
ATCGAATCATTAAACGTCGCCAAGCAAGAGCTAAACTTGAAGCTGAAGGA
AAAATACCAAAAACTCGAAAGATGGAGAATTCTACAGCTACCCCTCAACA
AGCTGTCCAAGTCAATGCTTCACAGGCACATATAATCCAACAAGGAGGAA
CAACAACAGCCCCTATCCAAATCTTTGCCCAAGATGGAGGTGGAGCGGGC
AAAGCATTTTACATTATCGATCCTTCTCAAGTGACAAACGGTTTACAAAT
GATATCAAATGCTGATCAAAGATTTGAACTTAACAGTGGAAGCACAACTA
CAGCTTCTCCACAAACTTTGACTGCTGCTGCTAATGCTGGAGCTCAACAA
CAGGCAAATCAAGCTACTGTAGTGAAATACCTTCACGAATCAAGGCACTT
GCACGCCGTCCGTCGTAATCGAAGTATGGGTGGCCGATTTGTCGGTAAAC
CGAACATGGACCTCGGCGCTGATGAGCCGGTAACACCGCGTGAACAATCG
ACCCTTTCGAACGTTACTCAACATTCGGTATCAGCTTTGCCCACAGCGAC
TATGCTACCCAGTCACACAATGATTCAGATTCAAAATAACATTCCTGTCA
TGTCTAGTACTGTACATAACACTGGTCCGGTACCTATAGTTGTTTCGACT
GCATCTGGACTGGCCAGTTCTTGATTAAACGGACAACAAGTGTTGGCGCA
AAGAGTTCCAGTTGCTATGGAAGCTTTAGATGAGCCACTATATGTTAACG
CCAAACAATACCATCGAATCATTAAACGTCGCCAAGCAAGAGCTAAACTT
GAAGCTGAAGGAAAAATACCAAAAACTCGAAAGATGGAGAATTCTACAGC
TACCCCTCAACAAGCTGTCCAAGTCAATGCTTCACAGGCACATATAATCC
AACAAGGAGGAACAACAACAGCCCCTATCCAAATCTTTGCCCAAGATGGA
GGTGGAGCGGGCAAAGCATTTTACATTATCGATCCTTCTCAAGTGACAAA
CGGTTTACAAATGATATCAAATGCTGATCAAAGATTTGAACTTAACAGTG
GAAGCACAACTACAGCTTCTCCACAAACTTTGACTGCTGCTGCTAATGCT
GGAGCTCAACAACAGGCAAATCAAGCTACTGTAGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072790-exon-scaffold_84-1575043694:153852..154322 | TCONS_00072790-exon-scaffold_84-1575043694:153852..154322 | Clytia hemisphaerica | exon |
| TCONS_00072790-exon-scaffold_84-1575043694:141776..141934 | TCONS_00072790-exon-scaffold_84-1575043694:141776..141934 | Clytia hemisphaerica | exon |
| TCONS_00072790-exon-scaffold_84-1575043694:140352..141413 | TCONS_00072790-exon-scaffold_84-1575043694:140352..141413 | Clytia hemisphaerica | exon |
| TCONS_00072790-exon-scaffold_84-1510915933:153852..154322 | TCONS_00072790-exon-scaffold_84-1510915933:153852..154322 | Clytia hemisphaerica | exon |
| TCONS_00072790-exon-scaffold_84-1510915933:141776..141934 | TCONS_00072790-exon-scaffold_84-1510915933:141776..141934 | Clytia hemisphaerica | exon |
| TCONS_00072790-exon-scaffold_84-1510915933:140352..141413 | TCONS_00072790-exon-scaffold_84-1510915933:140352..141413 | Clytia hemisphaerica | exon |
| TCONS_00072790-exon-scaffold_84-1491911889:153852..154322 | TCONS_00072790-exon-scaffold_84-1491911889:153852..154322 | Clytia hemisphaerica | exon |
| TCONS_00072790-exon-scaffold_84-1491911889:141776..141934 | TCONS_00072790-exon-scaffold_84-1491911889:141776..141934 | Clytia hemisphaerica | exon |
| TCONS_00072790-exon-scaffold_84-1491911889:140352..141413 | TCONS_00072790-exon-scaffold_84-1491911889:140352..141413 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_84 | supercontig | scaffold_84:140352..154322 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003700 | transcription factor activity, sequence-specific DNA binding |
| GO:0003677 | DNA binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016602 | CCAAT-binding factor complex |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006355 |
regulation of transcription, DNA-templated |
| cellular_component |
GO:0016602 |
CCAAT-binding factor complex |
| molecular_function |
GO:0003677 |
DNA binding |
| molecular_function |
GO:0003700 |
transcription factor activity, sequence-specific DNA binding |
Blast
BLAST of TCONS_00072790 vs. Swiss-Prot (Human)
Match: NFYA (Nuclear transcription factor Y subunit alpha OS=Homo sapiens GN=NFYA PE=1 SV=2) HSP 1 Score: 111.694 bits (278), Expect = 1.018e-26 Identity = 53/76 (69.74%), Postives = 59/76 (77.63%), Query Frame = 1
Query: 496 QRVPV-AMEALDE-PLYVNAKQYHRIIKRRQARAKLEAEGKIPKTRKKYLHESRHLHAVRRNRSMGGRFVGKPNMD 717
QR+P+ E L+E PLYVNAKQYHRI+KRRQARAKLEAEGKIPK R+KYLHESRH HA+ R R GGRF D
Sbjct: 250 QRIPLPGAEMLEEEPLYVNAKQYHRILKRRQARAKLEAEGKIPKERRKYLHESRHRHAMARKRGEGGRFFSPKEKD 325
The following BLAST results are available for this feature:
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