TCONS_00072790 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072790
Unique NameTCONS_00072790
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1692

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072790 ID=TCONS_00072790|Name=TCONS_00072790|organism=Clytia hemisphaerica|type=transcript|length=1692bp
ATCTTTTCGGTTTTCGATAATCTTAAATGCGCATGCGTGGGCGCacaaaa
acatcaacaaaagATTTCAGCGTGTCGACATTTTCTCGGAACGTAAAATC
ATAACATTTCTCAAAGTTTTGAGTTTTACGTCGAGTTTTCTTTCATATTT
CTGAATTTTGCCTTTAAAATGGAGAATTCTACAGCTACCCCTCAACAAGC
TGTCCAAGTCAATGCTTCACAGGCACATATAATCCAACAAGGAGGAACAA
CAACAGCCCCTATCCAAATCTTTGCCCAAGATGGAGGTGGAGCGGGCAAA
GCATTTTACATTATCGATCCTTCTCAAGTGACAAACGGTTTACAAATGAT
ATCAAATGCTGATCAAAGATTTGAACTTAACAGTGGAAGCACAACTACAG
CTTCTCCACAAACTTTGACTGCTGCTGCTAATGCTGGAGCTCAACAACAG
GCAAATCAAGCTACTGTAGTGTTAAACGGACAACAAGTGTTGGCGCAAAG
AGTTCCAGTTGCTATGGAAGCTTTAGATGAGCCACTATATGTTAACGCCA
AACAATACCATCGAATCATTAAACGTCGCCAAGCAAGAGCTAAACTTGAA
GCTGAaggaaaaataccaaaaactcGAAAGAAATACCTTCACGAATCAAG
GCACTTGCACGCCGTCCGTCGTAATCGAAGTATGGGTGGCCGATTTGTCG
GTAAACCGAACATGGACCTCGGCGCTGATGAGCCGGTAACACCGCGTGAA
CAATCGACCCTTTCGAACGTTACTCAACATTCGGTATCAGCTTTGCCCAC
AGCGACTATGCTACCCAGTCACACAATGattcagattcaaaataacattc
cTGTCATGTCTAGTACTGTACATAACACTGGTCCGGTACCTATAGTTGTT
TCGACTGCATCTGGACTGGCCAGTTCTTGAGATTTGAAATTAATGTAATG
TATTTTTTCGCAGTTGTAGTTATCTAGTCAGTTTTCTTGTAAACTGATAG
AGTTTAAAACTATCAACCCATGCGTCATCTGAGCTTGGGGTTTGAGTTTT
AGTCAACGGAATAATATCATGTCAAATCGGGTCAAATCTTTATCTTTCAG
TATTTGTCAAAGTAATGAATTCAGACAAATTTGATGTCATTTGACCATGG
TTTCTCGTGACCTATCTTCTCTTTCTGTACATGGATTAGAACTATTAATA
ACAGTAAAGAAANGTATCTTCTCTTTCTGTGCATGGATTAGAACTATTAA
TAACAGTAAAGAAAATTGCAGATTGCTCCACGATTTTCTAAACGAGACCT
AGAGTAATAACGTGTGGCTGAGACATATTTTTTCTCGACTTTTACAAGAT
GAGGATCTACTTCTTTCTTTGTTTCCAAGTGGAATTATCAGGTAGTTAGG
TATCAATCGTACCTAAAAAGTCATTCGTTTAATattataatttatgaaaa
aattaagaGAATTATTTAGTTTTTGAATCTTAGTAACAAATGAACACATT
GAGACATTGTTTGTTTCAGGTGAACTttttgtgaattattttttgtaaat
attgtaaatattataaatttttaaagtgcgcctctttttcattttttttt
ggttaAGAATTGTTTTAAGATTCAAGTAACTCTCCGTTACAGTTATAATA
CAGACAAACTGAAAGAAATTTCTACAATCCTCTAATTTTTCG
Run BLAST on NCBI

protein sequence of TCONS_00072790-protein

>TCONS_00072790-protein ID=TCONS_00072790-protein|Name=TCONS_00072790-protein|organism=Clytia hemisphaerica|type=polypeptide|length=253bp
MENSTATPQQAVQVNASQAHIIQQGGTTTAPIQIFAQDGGGAGKAFYIID
PSQVTNGLQMISNADQRFELNSGSTTTASPQTLTAAANAGAQQQANQATV
VLNGQQVLAQRVPVAMEALDEPLYVNAKQYHRIIKRRQARAKLEAEGKIP
KTRKKYLHESRHLHAVRRNRSMGGRFVGKPNMDLGADEPVTPREQSTLSN
VTQHSVSALPTATMLPSHTMIQIQNNIPVMSSTVHNTGPVPIVVSTASGL
ASS
Run BLAST on NCBI

transcript from alignment at scaffold_84:140352..154322-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072790 ID=TCONS_00072790|Name=TCONS_00072790|organism=Clytia hemisphaerica|type=transcript|length=13971bp|location=Sequence derived from alignment at scaffold_84:140352..154322- (Clytia hemisphaerica)
ATCTTTTCGGTTTTCGATAATCTTAAATGCGCATGCGTGGGCGCACAAAA
ACATCAACAAAAGATTTCAGCGTGTCGACATTTTCTCGGAACGTAAAATC
ATAACATTTCTCAAAGTTTTGAGTTTTACGTCGAGTTTTCTTTCATATTT
CTGAATTTTGCCTTTAAAATGGAGAATTCTACAGCTACCCCTCAACAAGC
TGTCCAAGTCAATGCTTCACAGGCACATATAATCCAACAAGGAGGAACAA
CAACAGCCCCTATCCAAATCTTTGCCCAAGATGGAGGTGGAGCGGGCAAA
GCATTTTACATTATCGATCCTTCTCAAGTGACAAACGGTTTACAAATGAT
ATCAAATGCTGATCAAAGATTTGAACTTAACAGTGGAAGCACAACTACAG
CTTCTCCACAAACTTTGACTGCTGCTGCTAATGCTGGAGCTCAACAACAG
GCAAATCAAGCTACTGTAGTGGTGAGTTTTCGCCATAAATTTGGTACTAA
AATCGTGAAAAATGGCGCCGAAAAAACGAAAAACAAAACCTTTATTTTCA
GTCTTATTCTGTTTAAAATCTAGTCTGAACTATAAATGTTTTATTCCTAA
TTGGTTTTGAATTTTGATTGCTAAAATTCAAATTTTTTTGCTGTTTTTAT
GCTTTCCTTGTGTGCACCAATACTTTTTGAGTGTTTTGTAAATTGGTGTA
TGGTGATTGGCTGTTGTTTTCCTGAAGGCTCATTGGGTGTTGAAATCAAC
TAATAGGAAAGCAGCTTTGAGTAGCTAGTTACCAATCAGATTTTCTGTAA
ACCAAAATGTATGTTTTTGATTTAGTTTGTTGATTCTGTTGGCCTGAATC
ACTTTAGAGGGTTACTTCTTTCTAGTGAAATCCTTCATTTTTATTAAGAA
GTTATTATTTTTTGAAGGTTTTGATTCAAAATGAGCAAAATGGCCACTTT
AAGGAATTCTTCAGGTAATGATGTTGTTTCTTACAGACTTGTATGAGCTC
TTCCAGAGATAAAGTAGAAAAAATGGATGTGGATGGCCAATATTTTCAGT
CATAAGAAGCCCAGCCATAGTAAAATTTGTTTTAAAATGTCTCTAAAATT
CTAGATGTTTTTCATTTGAACCATACCTCCTCTGTTAAAGTAAAAGGCTC
TTTAGAGTTGAGTGCGGTACCATAAGTTAGTCTAATATTGACATCCCTCG
TCTTTCGTCCCTTCTTTAGAGACAGGACTAATATGAAAGCTTGAACCACT
GATTGAAAAAAGGATTATTCCTCTCTGATCACTTAGCAAAGAAAAACAGT
TTCAACCTTTCTATCAATTTTAGCTAATAAAAAGGTAGCCTGGGAATCCA
AGCGTTAAACTTTGTTCACAGTCTAGTTTATGATATATTTTTTTCTATGC
TTGTTTAACGCTTGGCGCAGGTAACTCGCCTGCAGGGAGATTTTTCCCTG
CAATGCAGGTTCGGCCTGATTGGCCAGCTTTGGGCGTATTAAGGTGGTCG
TTAACACTTCTGAGATAGGATCATCTTTTTCGGGTCGATTTTTCAATTTT
TGGTTTAAATTAAAGTTTGAACCTTGCTAAACAATATCCTGAAGTTTTAT
TTCATATAAAGAAGAGGAAAGTCGAAAACTTTAGGTCTTTAGACACGTAC
CTGAGCAGATTTTGTGGTCCGCCCCAAACGCCCGTCCCGCCGCCCGTCAC
GAAAATCGCAATATTAGCCCTTCTGGTTCTTGGAGCGACTCCAAATTTTT
ACTGTCGCTACTTAGAGCCACAAAGAACATTCCCGGAAAATTTTACACCG
GTACTGTTAATAGTTCCGGATTTATGACAATCGAAACAAACCCGCCATCT
TGAATCTTGTCAAATTTCAAGTGTGGATTATTGTTAAAGGGAATGGCTGT
TTCATGGCTTATTTTCTTGTAGTAAGTGATGGTTTGATGCTTCCTTTTTA
TATAAAGAGCTTCTCAAAACTCCAAGGAACATTTTTACTTGATAAACTTT
CTAATTTCCTTCCCATTGGGATCAAATTTCAGCGCCACACAAAATGTGTG
ACAGGTACGTGTAATTTCTTTTGTTTTCTCTCTCTCTTTTTAATTGTTTA
ATTCATAATTTATTGTTTAAAACGTCCATAACTTCTTCTTCAAGCTATCT
ATACACATTTAGTTGGATTTTGATAGTGATATAGTTGATTTTGGTGTATT
TCGGGGTTTTCGCAAAAGTGAAAGTGAAAGTGCTCTTTATTAGACTTGAG
CGCANNNTCCATAACCTCTTCTTGAAGCTATCCATACACATTTAGTTGGA
TTTTGATAGTGATATAGTTGATTTTGGTGTGTTTCGGGGTTTTCGCAAAA
GTGAAAGTGAAAAAAGTGCTCTTTCTTAGAATTGAGCGCAGCTTGTATTT
CAAGTAATAGGGATAAAGATTTGCTTTGTTACAGTGAGATGTGTTACTTT
AACCAATGAAAGGGTTAGGGAATACTTTTCAATCACTTTTCACCAAATTT
AAGCTTTTTCGCAAGCAAAAGTAAGGTTCACGCAACTTTTTTGTATGTTT
GCGGTAATCTCAGGGTTCTGCGCGACACCATAAATTTGCTGAAATATGCA
GAAGAAAATGGCTTTACTTTCTATCTTAAGGTCAAAATTGAATCAGTGCA
TCAAGTTTAACTGAAATCTGTCAAAATTCCCATATTGAAAGCTTTTTTTT
CCTCTCTCTACAGCAAAAAATAGTTTCAGGCCAGTTTACGCAAAACAGCA
AAACCGGGGGTTTTCAATCTTGTGGCGGAAGAATCTCAAGATTGGCTGGT
CCGATTTACTTGGAATTTTGTACACAGCTTTCTCTTAGTGCAAGGGGTGT
TTTGAGTGAAACAGATTTTTAAAAAAATGTTTTGTTGATTTCAAAATTAA
AAAAAACAGTTTTTTGCATTTTTACCCCCGGTTTTTGATTTTTTTTTAAA
AAATTTTCACTCAAAACACAGTAGGTCAATATTGTAACATAACTGCCAAA
TATCAAAATCTAACTCCATCTGGTTGTTGAGATTCTTCTGCCACAAGNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNGTATCATCATACAAAATTTCAACAATATATCATTTATAC
ATTTTGAGATATTTCAATTTGAATATTTTTTGACATTTTCAAAAAGTTTG
TTAACGACCACCTTAATTTATGGAAAAAGCCGTCTCTGCAGAAAAAAGGA
AAACAAATGAAAATGAAAACATAGATTCATTTAGAAACAAAATGGCTGTT
GGCTGGATGTCTAAATACATGTGGCTGATGTTTTGATGTGGTTTTTAGTA
GTTTTGAAAGTCTTTAGAGCTTGTTAAAGAGTTTTTATGGTAAGTTAATT
ATGTGTGTTTGCCTGGGTTTCCAAAGTTCAGAAAGTCTGTCGACAAGGGT
TCACACACAGACTGTTTATAACGTTCTGTGCCAGACTAATCTACCTGCAC
CAAGCTCTTCAATCTTAGAACTTTGTGAGGTGAGGTATTTTTGTTTTTTT
CTAAGATTTTGAGCTTGGATTCCCAGGCTAATAAAAGGGTGTCGGAATTA
GAAGAGGGATGTTGACATTAAACCAAGTTACGGTACCCAGCTGATGTGGA
TGATTATGTCCAGACGTTACTAATTGATAAAATTGATTGTCAATTAAAAT
TGATTGTCGATTAAAATTGATACCATGAGTGGTCCTAAATCCGACAGCCC
TGCCTAAATCCCATCCCCCAAATACCATGAGAGGTCCTAAATCCGACACC
ACTGCCTAATTCCGACCCCGCAAATAACTGTTATGAAAAAAAATTCTATG
TTTACAAACATTCCCTCTCTAAGTTGAACGATAAACTATTGCTAGAACTC
TCAAAACAAAACATCTAAAAAGATTACTATAATGTTAAGATGTCAATAAT
TAATGTGATCAAAAACGTGTGAGTTGTAAAAATAATTACCACCTTTATTC
TGTATTCTGAATCTATTACTCTTGTTTAACGTTAAACAATTCGGACAATT
TTGTAATAAAAAATTATTTTTGAATAAAAGCAATTATTGTTATTTGGTTC
AATTGGTTCAGTGTATCAAATTTCTCAGTTTAGTTGACACTTTGGTATCT
TCGTTGCGTTACAGCGAAAGGTTTGTTTTTATTTTAGTTTGCAGGCATCG
AAATAAGGGATAGAAGAAAGTGTATCGCAATTTTTTGATAAGCATGATTT
TGCATCCTAAAATGGATCAATTTTCAATTTTTAGCGTGTAAGTAATCCAA
AAACGCAATTTAATTATTAACAACTCATAGAAGTTTGAAAATCCATTTTT
CTGTTGTTTTTTTTGACGGACCAACCAAGTCATTCCTTTTTGGATAAAGA
TCATTCAATAATTGATGAGACAATTGTAATTACTTTTTAATTTTATGCTA
TTGAATGTTTTGATCTGAAAATAAAAGATGACAAAACATTAAAGAAAAGA
ATAAACTATCAATATCCTCCATCCCCCTCCAGTTTTCAGTTCCTTTGAAA
ATTTTATTGGGACTCATGCCCACTGTCCTGTTTCTGGCACATATCTACGT
GGTGCCTTACTAACACGTCGAGGTCTGGGAGGGGTNTATGCCCACTGTCC
TGTTTCTGCCACATATCTACGTGGTGCCTTACTAACACATCGAGGTCTGG
GAGGGGTGGATGAAGGCTCTTCAGATGATTTCTTCGGGGTGCCCATCGAT
GACGGCACTGCGTCTTTGGGTGTTCCAGGTTGCGTCGCTGGTACACTAAC
GGGAGGCAGGGGCGAGATGGGCTGTGGAGCAGCTGTAAGAGGTGGAATGA
CTGGTTCTCTTACAGGTGTAGCAGGCGGTAGAACAATCAGACTTGATGGC
AGTGGAGTCGACTGTTGTTGGGGTGGTCTAAATTGTTGCACGGTTCGTCT
CTGCAGGTTGGGATCGTCAGGTCTTGGCAGTTTGAGAGTTCTTCTTTGGG
AGTGGCGGCAATGGAGGTCCAACAAATGCGTCTCGGTTGGTGATGTCAAC
AGAGGCTGGTTCGAAACGTCGAAGGTAGCGTCGGTTGCAACGGGTTAGAC
GATCAGTGTCATCAGCTCTTTGATTGTGCCAGATCGGTCCCATCGTTTGG
GGTTGTTACCAGTCTGGTTCTGGATATAGCATCTGTCACCGAGGCGGAGG
TCAAGGAGCATGCGAGAGTGGTGGTTCCGCTCTTCAGCAGCATGATGGAA
TCTGTGACGTAGGGCTTCCTCTTTCTGTTGCCAAGCTGCGCGCCAGATAG
GACGGACATGTTCGTTGCTGAATTTATCAAGGCGATTGATGAATGCAAAT
GCGTCACGGATGGGACGACCAAATACTATCTCCGCAGGTGAAAGTTGACA
ATCAGGGTCAGGTGTGTTACGCAGTTGCATCATTGCCCTCAAAAAGCGGT
CAGTATCAAGCATTCCAGAAGGACCAGTGTTCGAACAAAGCAACCTCTTG
GCAGACTTGACCGGAACCTCAGCGTGACCGTTTGATTGGGGATTGTAGAC
TGATGAGAGTCTGTGTCTGACACCCCAGCGCTCCAAGAAATCTTGAGTCA
ATCCAGACATGAATTCAGGGCCACCATCACTTGACATTTCCTCTGGTACA
CCGAATCAGGCAAAGTAGTTTCGTAGACACGTGATGAGTCCTTCAGATCC
AGCTTGTGGTGATCCTTTTGGGGCTTGGAAGACATCGCCAACTACGAGGT
AGTGCTGTCCAACGCAGTCAAAGAAGTCAGCATAGCTTTGTTCGAATGGA
GTTGTTGATGGTGAGGCTGGCGAGGTAGGTAGGGAGTGGGATGGTGCATT
ACGGATACACTCTTGGCAGGCTTGTCTGCGATGCTCAATGTCATAAGTCA
TCCCTGGCCAGAAGACGATGGAACGTGTACGCAGACCCATGGTTGATACG
GTGGGCGGCATGAAGGGCATCAAGGACTGCAGGTTGTAACGATTGTGGAA
TAACAACACGATCATTGTAGATGATGACACCATCTGTGATGTGAAGACTG
TCACGGTACTGCCAGTAAGATGAAGTAGCGTGGTGGTCACGATAGTTTTC
GGGGAAGCTGGCAAGAACAGCTTGGTATACGAGGGCAAGATTCTGATCGT
TTTGGGTTTCGGATGACAAGCATTCCAGGTGATCGAGGTGACCTTTTCAG
CATCGTTGCGGATGGCAGCAGCCACCATGAACTCGGGCAGCATGTGATCA
GGTAACTCCTCCTCATTGGATGGTGATGGGTGGCGAGATGTAGCATCAGG
GGCAAGATTGGTCTTCCCTGGGACATGAATGACACCAAAGTACCAGGGCA
GGCTCCTTTCTTTCAGGCGAAAAAGTCGTGTGTTGTGAATTTCATCTAAA
GTTCTGTCACCATATATTTTAATAAGAGGCTTGTGATCGGTAGCTACAGT
CAATACACCGTTTAACAGTCTCGCCATCTCCACCGAGAAGCGGTAGGTAA
AAATGCTCACTTTAGTACTGTGGAAGGTTAGAGAAATGTAAACATTGCCT
TTTTTTTCTTTCCTTTAAAGAGAATGTTTTAGATGTTTGAACATGACAAT
TTTATGTATCTCTCCTGAAAATTTCACAAAAATTCATCTAGAGGAAAAGA
AGTCATGATTGAAAGGAGTTCTTTACCTACCATTTCTCTGCTGGGTTTTC
TTATGAGAACTGGATGTTTACCTACCATTTTTTACGGGGGAGAGTGAAGT
TTCCCATGATTGCCAAAATCAAAACAATGGAAAATTGTTCTTACACATGC
GCAGTCGACACTGTTAAACGGTGTATTGANGTTGCCAATATCAAAACAAT
GGAAAATTGTTCATACGTGTGCGCAGTCGACACTGTTAAACGGTGTATTG
ATCACAACCTAAGGTGAAGTATTTCGTTTGTTTCAGCCCCCAGGTGATCG
CGAGGGCCTCACTTTCAATCTTTCAATTGGTGCGTAGTGTTCCTCAGTTG
GCTTGAGGAAACGGGATCCAGCCAAAGTAATACGCCAGCCATCCTGACAG
CAGTTTGGCTTGTCGTCTGCACAGTCACAATATTTTTGTTGTAAAAAATA
GCCAACGCCACGCTTCGACCAGTCCATGCGGAGACACATAGGTAGGTGGA
GGTCGAATATTTCAACACCTGATCGAATAGCTTCAACAATGGCTTTCTTT
GACGCTGTGAAGGCACGATCAAGCTCAGGGGTCCATTTGAATGGATGTTT
TGGAGAGAGAAATGGACAGAACGGTTCTATGTGTTCACGGAGCTGTGCGT
AATTCCCCACCTGGTTGTAGTGCTGATGGGCGTTGGGAAATTCTCTATGG
CATTGTAGAATTTTGGGAGTGGTTCTATTCTCTCATCTGAGATGCGGAAT
CCGGCAAAGTCAACGGCTCTGCCAGCGAATTGAAACTTTTGCGGGTTGAG
CACGATTCCTGAACGACCAACTGTTTTGAGGAAGTCGATTGTTTGCCACC
AGTGTTCTTCCAGACAGATAAAAAGATTCACTAAAGTCTGTCTCAAAATA
ATTTGCAGCTGGAGACAAAAATGGCTGTAACTTTTGATAGAATTCGAATC
AAGTTGCGATTGTGTGCTCGTTAAAAAGATTTTCGTGAGTGGAATATTAT
CAAGTAAAAAATTTGAAAAAAAATGAAAAATGAAAATGAAAAATGAAGAA
GAAAAAAATCAATTTCTTGTAGAAATGTGGTATAATTACCATTTTCATAG
GAGTGATTCTTCAATCTTAGATCATCATCACTGTCAAAAAAAAATTCAAA
AATATTCATTCAATCAAAAGATACCTTAAGGGAAGAAATTTTTGCGAGAA
GAAATTTTCGCGGAATTTAATTTCGCGAATCAGAGTTTCAAAATGGCAAA
TTTCGCGGAATTTAATTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTTGATGCACAAAGGTT
TCTAGACGACTAAAATTGTTCCATTCATTACTTTTTGCTTTATTTCTACT
ATGTATAAATTAGTCGTCTAGCTTGCTAGACTAACTTAAATTAACTTTTA
ACCATCACTGAGTTATTTATATTTGTTTATATTTGATAAGAAATACACGT
TATAATGCTTAAAAATCAATTGTGTCCATATTTTTTGGTAATACCTGGTC
AAAAACAACAAAATAAAAGAAGAAGAAAAAAAATCGAATTTCGCGGAATT
TAGTTTCGCGATTTAACAATTTTGGTGTGTTTCGCGGAATTTAATTTCGC
GAATTACACCCAAATTCGCGAAATTAAATTCCGCGAAAATTTCTTCCGCG
AAAATTTCTTCTCGCGAAAATTTCTTCCCTTAAGGTATCAAACAAAGTTT
ATTGCTGGTTGAGTCTATAAACTAGTAAAAAACGAAAAAAAACAGCCTTT
TGTCGATTGTAATTACTTTTTAATTTTATGCTATTGAATGTTTTGATCTG
AAAATAAAAGATGACAAAACATTAAAGAAAAGAATAAACTATCAATATCC
TCCACTTTGGCCTAAAGACAATGCAATTTTAAAAAACGGGGGCACCTAAT
TGCTGGGGGTTTTGAAATTGTACTTCTGAAAACCCAAAAATAAGATAAAT
ATAGGCTAAAATCAGGCTATTTAGAGCAAAATAAGGGGCCTTCTCATTGA
CAGCTGAAAATATTCTTAAAATTAATACTTATTTTGTTTCCGGTCCGTTG
GCCGGGTGAAAATCTCTACCAAATTATAAAAAAAATTTCTGAGTTTTATA
CAATTTCCCATTTAAACATTTTCTACACTCAAGTGATCCAGAAACTTTCC
CCCATCTTATCGATTTCACTTTTCAAATTTTAAATCAGAATTCCTAATAT
GAATTATGCTAGGCTTGAAGTGAAGTAGCATCGTCATGTATTCTGTCAAG
TGACTGGCTGCCCGCAGGACTTTTTTCATCACTCTGAGGTCCAGAAAGAT
AAAATCTCTTACAGTCGGTATAAAAACTTTTTTTTTTCTGTTAGCCTAAG
GGAAAGTAGGTTTCTGATTCTAACTTTTGATATTGATCTTTGTTTGGCAA
AATATTTCCAGGGTGTTGCGTTAACATTAAAAGTAACAAACTTAAATACA
GTAGACTCTTAAATTCTGACGTCAGCAGACGTCAGTAAAATTTCCGAAAA
AACGTTTGCCTGAAATATGCTGATGACAGCAAAAGAAATTAAATTGGTGT
GTTTCAGGCATCAATGCAGGCTCCTTTTTTATGTTATATTGAAAATTTCC
ATTTTTTTAGTTTTGAAAATTTTATTCATCCACGAAAGAATTTTATTTTT
TGCTTTTTTCACATTTATATTTTCCTTGAAAAAAGTAAGGTGTTCGAAAA
GTAAGGCTTGTGCAAAAAAAACTATTTCAAGAACTGCGCAAAATTATAAA
AGTTAATTGGATTATGGTAGCTCTCTTATTTCAGCATTAAAATTTTAATA
TCTTTTGCTACTAGATCAGGCACTTGAGATACTACAAGTATTCAATTGTC
ATGCTAACAAAAACATTATTGAATTTTGCTTAGGTGTTTCATTCAAGTGT
GTGGAGTGAGAAAAGGAATTTAAACTAAACAAAGTAGAATCTTTTATGCC
ATTAAATTTGGTAAGGAGATACCATCGTTTTTTCATAAGATTCTACTTCC
TGCCCTGAGATTCGACTAACTTGTCTAGCTGAAAAATGAACTTCGGAAAA
TTAGACAGTTTCGTCAGTCAGCACAAGATTTTCCTTACCTTGAGAAAAAA
ATCTTTTCCAATCTTATACCGGTTATCCTGGGGAAAAATCCCTGAAAAGT
CTGTATAATCTGAGTAGGGGAAGTTAAATCTTATGCAAAACGAGGGTAGA
ATCAAAATATGAATAGTGCAATATTTTAACAATTCATCTTGAAACGGTTG
GAGTGAAGGAAACATAAATTTACTCATCTCTATTACAGTTAAACGGACAA
CAAGTGTTGGCGCAAAGAGTTCCAGTTGCTATGGAAGCTTTAGATGAGCC
ACTATATGTTAACGCCAAACAATACCATCGAATCATTAAACGTCGCCAAG
CAAGAGCTAAACTTGAAGCTGAAGGAAAAATACCAAAAACTCGAAAGGTA
TCAATTATATCTCCTTAAGGATATTCTTTATTTTTTTGATATTATTAGTC
TTACATTCTTGTAAATCTTGTTTTGTTTTGAGTGAATAATGATTTATTTC
CAAAGGTTATTCCACATACAATATATTTTATTTATGTATATGCAATGGTT
TACAACAAATGATTTTATAGAATGTTTTTCATCCTCATAAGGCGATTACT
GAGCCCTGTAAGGAGAAATTATCTTGTGAAAGCTTTAGTTTGACATAAAA
CGTCCTTTCCCTAAGTCTTTTGTCTGTAGATTGTAAAGATGGTCTTCAAC
TCTACTTGCTATTGAGAGATTTGAAAGATTTTTATTTGATTCATTCTTTT
TGTTCGTAGAAATACCTTCACGAATCAAGGCACTTGCACGCCGTCCGTCG
TAATCGAAGTATGGGTGGCCGATTTGTCGGTAAACCGAACATGGACCTCG
GCGCTGATGAGCCGGTAACACCGCGTGAACAATCGACCCTTTCGAACGTT
ACTCAACATTCGGTATCAGCTTTGCCCACAGCGACTATGCTACCCAGTCA
CACAATGATTCAGATTCAAAATAACATTCCTGTCATGTCTAGTACTGTAC
ATAACACTGGTCCGGTACCTATAGTTGTTTCGACTGCATCTGGACTGGCC
AGTTCTTGAGATTTGAAATTAATGTAATGTATTTTTTCGCAGTTGTAGTT
ATCTAGTCAGTTTTCTTGTAAACTGATAGAGTTTAAAACTATCAACCCAT
GCGTCATCTGAGCTTGGGGTTTGAGTTTTAGTCAACGGAATAATATCATG
TCAAATCGGGTCAAATCTTTATCTTTCAGTATTTGTCAAAGTAATGAATT
CAGACAAATTTGATGTCATTTGACCATGGTTTCTCGTGACCTATCTTCTC
TTTCTGTACATGGATTAGAACTATTAATAACAGTAAAGAAANGTATCTTC
TCTTTCTGTGCATGGATTAGAACTATTAATAACAGTAAAGAAAATTGCAG
ATTGCTCCACGATTTTCTAAACGAGACCTAGAGTAATAACGTGTGGCTGA
GACATATTTTTTCTCGACTTTTACAAGATGAGGATCTACTTCTTTCTTTG
TTTCCAAGTGGAATTATCAGGTAGTTAGGTATCAATCGTACCTAAAAAGT
CATTCGTTTAATATTATAATTTATGAAAAAATTAAGAGAATTATTTAGTT
TTTGAATCTTAGTAACAAATGAACACATTGAGACATTGTTTGTTTCAGGT
GAACTTTTTGTGAATTATTTTTTGTAAATATTGTAAATATTATAAATTTT
TAAAGTGCGCCTCTTTTTCATTTTTTTTTGGTTAAGAATTGTTTTAAGAT
TCAAGTAACTCTCCGTTACAGTTATAATACAGACAAACTGAAAGAAATTT
CTACAATCCTCTAATTTTTCG

Coding sequence (CDS) from alignment at scaffold_84:140352..154322-

>TCONS_00072790 ID=TCONS_00072790|Name=TCONS_00072790|organism=Clytia hemisphaerica|type=CDS|length=2286bp|location=Sequence derived from alignment at scaffold_84:140352..154322- (Clytia hemisphaerica)
AAATACCTTCACGAATCAAGGCACTTGCACGCCGTCCGTCGTAATCGAAG
TATGGGTGGCCGATTTGTCGGTAAACCGAACATGGACCTCGGCGCTGATG
AGCCGGTAACACCGCGTGAACAATCGACCCTTTCGAACGTTACTCAACAT
TCGGTATCAGCTTTGCCCACAGCGACTATGCTACCCAGTCACACAATGAT
TCAGATTCAAAATAACATTCCTGTCATGTCTAGTACTGTACATAACACTG
GTCCGGTACCTATAGTTGTTTCGACTGCATCTGGACTGGCCAGTTCTTGA
TTAAACGGACAACAAGTGTTGGCGCAAAGAGTTCCAGTTGCTATGGAAGC
TTTAGATGAGCCACTATATGTTAACGCCAAACAATACCATCGAATCATTA
AACGTCGCCAAGCAAGAGCTAAACTTGAAGCTGAAGGAAAAATACCAAAA
ACTCGAAAGATGGAGAATTCTACAGCTACCCCTCAACAAGCTGTCCAAGT
CAATGCTTCACAGGCACATATAATCCAACAAGGAGGAACAACAACAGCCC
CTATCCAAATCTTTGCCCAAGATGGAGGTGGAGCGGGCAAAGCATTTTAC
ATTATCGATCCTTCTCAAGTGACAAACGGTTTACAAATGATATCAAATGC
TGATCAAAGATTTGAACTTAACAGTGGAAGCACAACTACAGCTTCTCCAC
AAACTTTGACTGCTGCTGCTAATGCTGGAGCTCAACAACAGGCAAATCAA
GCTACTGTAGTGAAATACCTTCACGAATCAAGGCACTTGCACGCCGTCCG
TCGTAATCGAAGTATGGGTGGCCGATTTGTCGGTAAACCGAACATGGACC
TCGGCGCTGATGAGCCGGTAACACCGCGTGAACAATCGACCCTTTCGAAC
GTTACTCAACATTCGGTATCAGCTTTGCCCACAGCGACTATGCTACCCAG
TCACACAATGATTCAGATTCAAAATAACATTCCTGTCATGTCTAGTACTG
TACATAACACTGGTCCGGTACCTATAGTTGTTTCGACTGCATCTGGACTG
GCCAGTTCTTGATTAAACGGACAACAAGTGTTGGCGCAAAGAGTTCCAGT
TGCTATGGAAGCTTTAGATGAGCCACTATATGTTAACGCCAAACAATACC
ATCGAATCATTAAACGTCGCCAAGCAAGAGCTAAACTTGAAGCTGAAGGA
AAAATACCAAAAACTCGAAAGATGGAGAATTCTACAGCTACCCCTCAACA
AGCTGTCCAAGTCAATGCTTCACAGGCACATATAATCCAACAAGGAGGAA
CAACAACAGCCCCTATCCAAATCTTTGCCCAAGATGGAGGTGGAGCGGGC
AAAGCATTTTACATTATCGATCCTTCTCAAGTGACAAACGGTTTACAAAT
GATATCAAATGCTGATCAAAGATTTGAACTTAACAGTGGAAGCACAACTA
CAGCTTCTCCACAAACTTTGACTGCTGCTGCTAATGCTGGAGCTCAACAA
CAGGCAAATCAAGCTACTGTAGTGAAATACCTTCACGAATCAAGGCACTT
GCACGCCGTCCGTCGTAATCGAAGTATGGGTGGCCGATTTGTCGGTAAAC
CGAACATGGACCTCGGCGCTGATGAGCCGGTAACACCGCGTGAACAATCG
ACCCTTTCGAACGTTACTCAACATTCGGTATCAGCTTTGCCCACAGCGAC
TATGCTACCCAGTCACACAATGATTCAGATTCAAAATAACATTCCTGTCA
TGTCTAGTACTGTACATAACACTGGTCCGGTACCTATAGTTGTTTCGACT
GCATCTGGACTGGCCAGTTCTTGATTAAACGGACAACAAGTGTTGGCGCA
AAGAGTTCCAGTTGCTATGGAAGCTTTAGATGAGCCACTATATGTTAACG
CCAAACAATACCATCGAATCATTAAACGTCGCCAAGCAAGAGCTAAACTT
GAAGCTGAAGGAAAAATACCAAAAACTCGAAAGATGGAGAATTCTACAGC
TACCCCTCAACAAGCTGTCCAAGTCAATGCTTCACAGGCACATATAATCC
AACAAGGAGGAACAACAACAGCCCCTATCCAAATCTTTGCCCAAGATGGA
GGTGGAGCGGGCAAAGCATTTTACATTATCGATCCTTCTCAAGTGACAAA
CGGTTTACAAATGATATCAAATGCTGATCAAAGATTTGAACTTAACAGTG
GAAGCACAACTACAGCTTCTCCACAAACTTTGACTGCTGCTGCTAATGCT
GGAGCTCAACAACAGGCAAATCAAGCTACTGTAGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045183XLOC_045183Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072790-proteinTCONS_00072790-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072790-exon-scaffold_84-1575043694:153852..154322TCONS_00072790-exon-scaffold_84-1575043694:153852..154322Clytia hemisphaericaexon
TCONS_00072790-exon-scaffold_84-1575043694:141776..141934TCONS_00072790-exon-scaffold_84-1575043694:141776..141934Clytia hemisphaericaexon
TCONS_00072790-exon-scaffold_84-1575043694:140352..141413TCONS_00072790-exon-scaffold_84-1575043694:140352..141413Clytia hemisphaericaexon
TCONS_00072790-exon-scaffold_84-1510915933:153852..154322TCONS_00072790-exon-scaffold_84-1510915933:153852..154322Clytia hemisphaericaexon
TCONS_00072790-exon-scaffold_84-1510915933:141776..141934TCONS_00072790-exon-scaffold_84-1510915933:141776..141934Clytia hemisphaericaexon
TCONS_00072790-exon-scaffold_84-1510915933:140352..141413TCONS_00072790-exon-scaffold_84-1510915933:140352..141413Clytia hemisphaericaexon
TCONS_00072790-exon-scaffold_84-1491911889:153852..154322TCONS_00072790-exon-scaffold_84-1491911889:153852..154322Clytia hemisphaericaexon
TCONS_00072790-exon-scaffold_84-1491911889:141776..141934TCONS_00072790-exon-scaffold_84-1491911889:141776..141934Clytia hemisphaericaexon
TCONS_00072790-exon-scaffold_84-1491911889:140352..141413TCONS_00072790-exon-scaffold_84-1491911889:140352..141413Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_84supercontigscaffold_84:140352..154322 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
18.5752	18.5369	12.2925	12.3403	33.7132	26.2582	26.2355	27.9303	16.8337	17.5353	16.6966	11.5355	10.5963	10.8033	11.2454	10.4524	17.7346	15.8583	5.38195	7.46298	10.7729	10.6871	22.0894	22.6093	20.8562	20.6309	7.91533	6.21743	15.7596	12.8944
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001289NFYA
IPR018362CCAAT-binding_factor_CS
Vocabulary: Molecular Function
TermDefinition
GO:0003700transcription factor activity, sequence-specific DNA binding
GO:0003677DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Cellular Component
TermDefinition
GO:0016602CCAAT-binding factor complex
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0016602 CCAAT-binding factor complex
molecular_function GO:0003677 DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
Blast
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BLAST of TCONS_00072790 vs. Swiss-Prot (Human)
Match: NFYA (Nuclear transcription factor Y subunit alpha OS=Homo sapiens GN=NFYA PE=1 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 1.018e-26
Identity = 53/76 (69.74%), Postives = 59/76 (77.63%), Query Frame = 1 
Query:  496 QRVPV-AMEALDE-PLYVNAKQYHRIIKRRQARAKLEAEGKIPKTRKKYLHESRHLHAVRRNRSMGGRFVGKPNMD 717
            QR+P+   E L+E PLYVNAKQYHRI+KRRQARAKLEAEGKIPK R+KYLHESRH HA+ R R  GGRF      D
Sbjct:  250 QRIPLPGAEMLEEEPLYVNAKQYHRILKRRQARAKLEAEGKIPKERRKYLHESRHRHAMARKRGEGGRFFSPKEKD 325
The following BLAST results are available for this feature:
BLAST of TCONS_00072790 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NFYA1.018e-2669.74Nuclear transcription factor Y subunit alpha OS=Ho... [more]
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