TCONS_00072790-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00072790-protein
Unique NameTCONS_00072790-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length253

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00072790-protein ID=TCONS_00072790-protein|Name=TCONS_00072790-protein|organism=Clytia hemisphaerica|type=polypeptide|length=253bp
MENSTATPQQAVQVNASQAHIIQQGGTTTAPIQIFAQDGGGAGKAFYIID
PSQVTNGLQMISNADQRFELNSGSTTTASPQTLTAAANAGAQQQANQATV
VLNGQQVLAQRVPVAMEALDEPLYVNAKQYHRIIKRRQARAKLEAEGKIP
KTRKKYLHESRHLHAVRRNRSMGGRFVGKPNMDLGADEPVTPREQSTLSN
VTQHSVSALPTATMLPSHTMIQIQNNIPVMSSTVHNTGPVPIVVSTASGL
ASS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_045183XLOC_045183Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00072790TCONS_00072790Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001289NFYA
IPR018362CCAAT-binding_factor_CS
Vocabulary: Molecular Function
TermDefinition
GO:0003700transcription factor activity, sequence-specific DNA binding
GO:0003677DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Cellular Component
TermDefinition
GO:0016602CCAAT-binding factor complex
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0016602 CCAAT-binding factor complex
molecular_function GO:0003677 DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001289Nuclear transcription factor Y subunit APRINTSPR00616CCAATSUBUNTBcoord: 153..176
score: 72.45
coord: 122..144
score: 83.33
IPR001289Nuclear transcription factor Y subunit ASMARTSM00521cbf3coord: 118..179
e-value: 5.5E-34
score: 128.9
IPR001289Nuclear transcription factor Y subunit APFAMPF02045CBFB_NFYAcoord: 121..176
e-value: 9.2E-27
score: 93.3
IPR001289Nuclear transcription factor Y subunit APROSITEPS51152NFYA_HAP2_2coord: 119..179
score: 34.937
IPR018362CCAAT-binding factor, conserved sitePROSITEPS00686NFYA_HAP2_1coord: 124..144

Blast
BLAST of TCONS_00072790-protein vs. Swiss-Prot (Human)
Match: NFYA (Nuclear transcription factor Y subunit alpha OS=Homo sapiens GN=NFYA PE=1 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 1.651e-29
Identity = 53/76 (69.74%), Postives = 59/76 (77.63%), Query Frame = 0
Query:  110 QRVPV-AMEALDE-PLYVNAKQYHRIIKRRQARAKLEAEGKIPKTRKKYLHESRHLHAVRRNRSMGGRFVGKPNMD 183
            QR+P+   E L+E PLYVNAKQYHRI+KRRQARAKLEAEGKIPK R+KYLHESRH HA+ R R  GGRF      D
Sbjct:  250 QRIPLPGAEMLEEEPLYVNAKQYHRILKRRQARAKLEAEGKIPKERRKYLHESRHRHAMARKRGEGGRFFSPKEKD 325          
The following BLAST results are available for this feature:
BLAST of TCONS_00072790-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NFYA1.651e-2969.74Nuclear transcription factor Y subunit alpha OS=Ho... [more]
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