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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072751 ID=TCONS_00072751|Name=TCONS_00072751|organism=Clytia hemisphaerica|type=transcript|length=1566bp
CTTCACAATTAATTTTACATTCGACTAAATTAGTGttattaaccaaaatt
ctaTATACAAATTGATTAAGTCTACTGGAAATCCATCGTTTCTTCAAACA
AACAAAGTAAACGGGTAAACCAAGCATCATCAACACTAAAATTAATATGG
TAATGAACGACTTTTCCATAATAGCCAAGATTAAAAGTATTAAGGGGATA
ACGATCATTATTATAGGAGTAATCAGCCATGTTTTGTAAGCTCGTTTCAT
GTTTGGTTTACGCCACCGGTTGACCAATATGGTGGAGACAGCAAAAGCGT
ATTCAAACCAAATCACAATATTACAAATTTGTAACATGCTTTGTAATTCA
AGATTTAGGAGTGTGAGTACTGTAGAGACGATTGCTAGAAAGATTACGGA
CGGTATGGGTGTCCGTCGCTCTCTGTGAATAAGTGCAAAAAACCGCGGAA
ATTGTCCCTCCCGTGCTGCGGACATCATGAGGCGCGGAAGGTTATAAAAG
ACAGCGGAAAGAGCCGGTATGACACATATAGAAACAGCAAAAGGCACCAC
ATATGATAATGACTCTCCACCGATCTTGAAAGCAACATCTGAGAGAAAAA
CATTGGAAGTAGCAATCTCTTTATGTGTCAATACAGCAGCGCAAGCCAGA
TTGATCAAAATGTAAAGGAAGGTTACGAATGGTATTGAAGTGAAGGAGAG
TAAAGGAACAGCTTTCGAAGGGTTGATTACTTCTTCCACTATGAACGCTA
TAGTGACGTAACCATCAAAACAATACAATGCGTTGAATAAAGCAATCCCA
AAAGACGGAAACTCGTCACTTAATCCATTCAATGTGTTGTTGAAAACGAT
ATTCGTTTCAAAATGGTGGTAAGTGTTCCTGGCTGATAATGAATAGATAC
CTAAGCCAACAATCGTTGCAAAGACAAGCATTTGTATAGCCATAAAAACC
ATTTGGAAAATGCCAGATTTCTTTGCTCCCAGACAGTGAATGACTGATAT
ACAAAGCATAATAACAATCCCGACTAACTTCGACATCCATTGATATTCTG
GTGACGTGTGATCTTCATAGAAAGGTGCGCATGCGTACAGACCGATAGTC
AGGAGCAGGATACAAGCGTCGCATGGTGCGAATAGAAACACGTTAGCCCA
GTTGACTAAAAATCCAGCTGCTGGTCCGTAACAATCCAATATAAAGACAT
AAGAAGAGCCTGTCTTCTTAACTATAGAAGCCATTTCACAATAGCAAAGT
GCTCCAATCAACGCCACTAGACCAGCTACGATCCAAGCGAGTAGAGAAAC
AAACAGGTTTGGCGTTCTCTGGGCGATTAGTGAAGGCGTTACGAAGATAC
CCGCCCCAACCATACAACCAACAACGAATGAAAACGCATGGCGGAATTTC
ATCTCACGTCTCAAAGTGTTTTCTTCCGGAGGTTGATCCTTTTGAGATGA
AAGAGAGTTATTGGCAATTGCCAATGGTGGAGATTCTAGCGTCGTTTTCG
TGTTGATTCCATCAACAGGAGACAAAAACGTTGTCTCTGCTACTGAACCC
ATGTTATTTATTAACT Run BLAST on NCBI protein sequence of TCONS_00072751-protein >TCONS_00072751-protein ID=TCONS_00072751-protein|Name=TCONS_00072751-protein|organism=Clytia hemisphaerica|type=polypeptide|length=521bp
LINNMGSVAETTFLSPVDGINTKTTLESPPLAIANNSLSSQKDQPPEENT
LRREMKFRHAFSFVVGCMVGAGIFVTPSLIAQRTPNLFVSLLAWIVAGLV
ALIGALCYCEMASIVKKTGSSYVFILDCYGPAAGFLVNWANVFLFAPCDA
CILLLTIGLYACAPFYEDHTSPEYQWMSKLVGIVIMLCISVIHCLGAKKS
GIFQMVFMAIQMLVFATIVGLGIYSLSARNTYHHFETNIVFNNTLNGLSD
EFPSFGIALFNALYCFDGYVTIAFIVEEVINPSKAVPLLSFTSIPFVTFL
YILINLACAAVLTHKEIATSNVFLSDVAFKIGGESLSYVVPFAVSICVIP
ALSAVFYNLPRLMMSAAREGQFPRFFALIHRERRTPIPSVIFLAIVSTVL
TLLNLELQSMLQICNIVIWFEYAFAVSTILVNRWRKPNMKRAYKTWLITP
IIMIVIPLILLILAIMEKSFITILILVLMMLGLPVYFVCLKKRWISSRLN
QFVYRILVNNTNLVECKINCE Run BLAST on NCBI transcript from alignment at scaffold_82:490441..492006 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072751 ID=TCONS_00072751|Name=TCONS_00072751|organism=Clytia hemisphaerica|type=transcript|length=1566bp|location=Sequence derived from alignment at scaffold_82:490441..492006 (Clytia hemisphaerica)
AGTTAATAAATAACATGGGTTCAGTAGCAGAGACAACGTTTTTGTCTCCT
GTTGATGGAATCAACACGAAAACGACGCTAGAATCTCCACCATTGGCAAT
TGCCAATAACTCTCTTTCATCTCAAAAGGATCAACCTCCGGAAGAAAACA
CTTTGAGACGTGAGATGAAATTCCGCCATGCGTTTTCATTCGTTGTTGGT
TGTATGGTTGGGGCGGGTATCTTCGTAACGCCTTCACTAATCGCCCAGAG
AACGCCAAACCTGTTTGTTTCTCTACTCGCTTGGATCGTAGCTGGTCTAG
TGGCGTTGATTGGAGCACTTTGCTATTGTGAAATGGCTTCTATAGTTAAG
AAGACAGGCTCTTCTTATGTCTTTATATTGGATTGTTACGGACCAGCAGC
TGGATTTTTAGTCAACTGGGCTAACGTGTTTCTATTCGCACCATGCGACG
CTTGTATCCTGCTCCTGACTATCGGTCTGTACGCATGCGCACCTTTCTAT
GAAGATCACACGTCACCAGAATATCAATGGATGTCGAAGTTAGTCGGGAT
TGTTATTATGCTTTGTATATCAGTCATTCACTGTCTGGGAGCAAAGAAAT
CTGGCATTTTCCAAATGGTTTTTATGGCTATACAAATGCTTGTCTTTGCA
ACGATTGTTGGCTTAGGTATCTATTCATTATCAGCCAGGAACACTTACCA
CCATTTTGAAACGAATATCGTTTTCAACAACACATTGAATGGATTAAGTG
ACGAGTTTCCGTCTTTTGGGATTGCTTTATTCAACGCATTGTATTGTTTT
GATGGTTACGTCACTATAGCGTTCATAGTGGAAGAAGTAATCAACCCTTC
GAAAGCTGTTCCTTTACTCTCCTTCACTTCAATACCATTCGTAACCTTCC
TTTACATTTTGATCAATCTGGCTTGCGCTGCTGTATTGACACATAAAGAG
ATTGCTACTTCCAATGTTTTTCTCTCAGATGTTGCTTTCAAGATCGGTGG
AGAGTCATTATCATATGTGGTGCCTTTTGCTGTTTCTATATGTGTCATAC
CGGCTCTTTCCGCTGTCTTTTATAACCTTCCGCGCCTCATGATGTCCGCA
GCACGGGAGGGACAATTTCCGCGGTTTTTTGCACTTATTCACAGAGAGCG
ACGGACACCCATACCGTCCGTAATCTTTCTAGCAATCGTCTCTACAGTAC
TCACACTCCTAAATCTTGAATTACAAAGCATGTTACAAATTTGTAATATT
GTGATTTGGTTTGAATACGCTTTTGCTGTCTCCACCATATTGGTCAACCG
GTGGCGTAAACCAAACATGAAACGAGCTTACAAAACATGGCTGATTACTC
CTATAATAATGATCGTTATCCCCTTAATACTTTTAATCTTGGCTATTATG
GAAAAGTCGTTCATTACCATATTAATTTTAGTGTTGATGATGCTTGGTTT
ACCCGTTTACTTTGTTTGTTTGAAGAAACGATGGATTTCCAGTAGACTTA
ATCAATTTGTATAtagaattttggttaataaCACTAATTTAGTCGAATGT
AAAATTAATTGTGAAG Coding sequence (CDS) from alignment at scaffold_82:490441..492006 >TCONS_00072751 ID=TCONS_00072751|Name=TCONS_00072751|organism=Clytia hemisphaerica|type=CDS|length=1563bp|location=Sequence derived from alignment at scaffold_82:490441..492006 (Clytia hemisphaerica)
TTAATAAATAACATGGGTTCAGTAGCAGAGACAACGTTTTTGTCTCCTGT
TGATGGAATCAACACGAAAACGACGCTAGAATCTCCACCATTGGCAATTG
CCAATAACTCTCTTTCATCTCAAAAGGATCAACCTCCGGAAGAAAACACT
TTGAGACGTGAGATGAAATTCCGCCATGCGTTTTCATTCGTTGTTGGTTG
TATGGTTGGGGCGGGTATCTTCGTAACGCCTTCACTAATCGCCCAGAGAA
CGCCAAACCTGTTTGTTTCTCTACTCGCTTGGATCGTAGCTGGTCTAGTG
GCGTTGATTGGAGCACTTTGCTATTGTGAAATGGCTTCTATAGTTAAGAA
GACAGGCTCTTCTTATGTCTTTATATTGGATTGTTACGGACCAGCAGCTG
GATTTTTAGTCAACTGGGCTAACGTGTTTCTATTCGCACCATGCGACGCT
TGTATCCTGCTCCTGACTATCGGTCTGTACGCATGCGCACCTTTCTATGA
AGATCACACGTCACCAGAATATCAATGGATGTCGAAGTTAGTCGGGATTG
TTATTATGCTTTGTATATCAGTCATTCACTGTCTGGGAGCAAAGAAATCT
GGCATTTTCCAAATGGTTTTTATGGCTATACAAATGCTTGTCTTTGCAAC
GATTGTTGGCTTAGGTATCTATTCATTATCAGCCAGGAACACTTACCACC
ATTTTGAAACGAATATCGTTTTCAACAACACATTGAATGGATTAAGTGAC
GAGTTTCCGTCTTTTGGGATTGCTTTATTCAACGCATTGTATTGTTTTGA
TGGTTACGTCACTATAGCGTTCATAGTGGAAGAAGTAATCAACCCTTCGA
AAGCTGTTCCTTTACTCTCCTTCACTTCAATACCATTCGTAACCTTCCTT
TACATTTTGATCAATCTGGCTTGCGCTGCTGTATTGACACATAAAGAGAT
TGCTACTTCCAATGTTTTTCTCTCAGATGTTGCTTTCAAGATCGGTGGAG
AGTCATTATCATATGTGGTGCCTTTTGCTGTTTCTATATGTGTCATACCG
GCTCTTTCCGCTGTCTTTTATAACCTTCCGCGCCTCATGATGTCCGCAGC
ACGGGAGGGACAATTTCCGCGGTTTTTTGCACTTATTCACAGAGAGCGAC
GGACACCCATACCGTCCGTAATCTTTCTAGCAATCGTCTCTACAGTACTC
ACACTCCTAAATCTTGAATTACAAAGCATGTTACAAATTTGTAATATTGT
GATTTGGTTTGAATACGCTTTTGCTGTCTCCACCATATTGGTCAACCGGT
GGCGTAAACCAAACATGAAACGAGCTTACAAAACATGGCTGATTACTCCT
ATAATAATGATCGTTATCCCCTTAATACTTTTAATCTTGGCTATTATGGA
AAAGTCGTTCATTACCATATTAATTTTAGTGTTGATGATGCTTGGTTTAC
CCGTTTACTTTGTTTGTTTGAAGAAACGATGGATTTCCAGTAGACTTAAT
CAATTTGTATAtagaattttggttaataaCACTAATTTAGTCGAATGTAA
AATTAATTGTGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072751-exon-scaffold_82-1491911889:490441..492006 | TCONS_00072751-exon-scaffold_82-1491911889:490441..492006 | Clytia hemisphaerica | exon |
| TCONS_00072751-exon-scaffold_82-1510915933:490441..492006 | TCONS_00072751-exon-scaffold_82-1510915933:490441..492006 | Clytia hemisphaerica | exon |
| TCONS_00072751-exon-scaffold_82-1575043694:490441..492006 | TCONS_00072751-exon-scaffold_82-1575043694:490441..492006 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_82 | supercontig | scaffold_82:490441..492006 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR002293 | AA/rel_permease1 |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0015171 | amino acid transmembrane transporter activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016020 | membrane |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0003333 | amino acid transmembrane transport |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0003333 |
amino acid transmembrane transport |
| cellular_component |
GO:0016020 |
membrane |
| molecular_function |
GO:0015171 |
amino acid transmembrane transporter activity |
Blast
BLAST of TCONS_00072751 vs. Swiss-Prot (Human)
Match: BAT1 (b(0,+)-type amino acid transporter 1 OS=Homo sapiens GN=SLC7A9 PE=1 SV=1) HSP 1 Score: 202.601 bits (514), Expect = 6.630e-58 Identity = 117/409 (28.61%), Postives = 210/409 (51.34%), Query Frame = -3
Query: 233 SSQKDQPPEENTLRREMKFRHAFSFVVGCMVGAGIFVTPSLIAQRTPNLFVSLLAWIVAGLVALIGALCYCEMASIVKKTGSSYVFILDCYGPAAGFLVNWANVFLFAPCDACILLLTIGLYACAPFYEDHTSPEYQWMSKLVGIVIMLCISVIHCLGAKKSGIFQMVFMAIQMLVFATIVGLGIYSLSARNTYHHFETNIVFNNTLNGLSDEFPSFGIALFNALYCFDGYVTIAFIVEEVINPSKAVPLLSFTSIPFVTFLYILINLACAAVLTHKEIATSNVFLSDVAFKIGGESL---SYVVPFAVSICVIPALSAVFYNLPRLMMSAAREGQFPRFFALIHRERRTPIPSVIFLAIVSTVLTLLNLELQSMLQICNIVIWFEYAFAVSTILVNRWRKPNMKRAYK 1450
S + Q P+ +L++E+ S +VG ++G+GIFV+P + T + L+ W G++A +GALC+ E+ +++ K+G Y ++++ YGP +L +WA++ + P I+ L+ Y CAPFY P Q + K + +L IS ++ L + Q +F A ++++ A I+ G+ L+ NT + F+N+ G + +A +N L+ +DG+ + +I EE+ NP + +PL IP VT YIL+N++ V+T E+ S VA G L S++VP V+ I A + + RL+ A REG + + I R TP P++IF I++T+ + ++ S++ + W Y + ++V R+ + ++R K
Sbjct: 14 KSIQSQEPKTTSLQKELGLISGISIIVGTIIGSGIFVSPKSVLSNTEAVGPCLIIWAACGVLATLGALCFAELGTMITKSGGEYPYLMEAYGPIPAYLFSWASLIVIKPTSFAIICLSFSEYVCAPFYVGCKPP--QIVVKCLAAAAILFISTVNSLSVRLGSYVQNIFTAAKLVIVAIIIISGLVLLAQGNTKN-------FDNSFEGAQLSVGAISLAFYNGLWAYDGWNQLNYITEELRNPYRNLPLAIIIGIPLVTACYILMNVSYFTVMTATELLQSQA----VAVTFGDRVLYPASWIVPLFVAFSTIGAANGTCFTAGRLIYVAGREGHMLKVLSYISVRRLTPAPAIIFYGIIATIYIIPG-DINSLVNYFSFAAWLFYGLTILGLIVMRFTRKELERPIK 408
The following BLAST results are available for this feature:
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