TCONS_00072751 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072751
Unique NameTCONS_00072751
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1566

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072751 ID=TCONS_00072751|Name=TCONS_00072751|organism=Clytia hemisphaerica|type=transcript|length=1566bp
CTTCACAATTAATTTTACATTCGACTAAATTAGTGttattaaccaaaatt
ctaTATACAAATTGATTAAGTCTACTGGAAATCCATCGTTTCTTCAAACA
AACAAAGTAAACGGGTAAACCAAGCATCATCAACACTAAAATTAATATGG
TAATGAACGACTTTTCCATAATAGCCAAGATTAAAAGTATTAAGGGGATA
ACGATCATTATTATAGGAGTAATCAGCCATGTTTTGTAAGCTCGTTTCAT
GTTTGGTTTACGCCACCGGTTGACCAATATGGTGGAGACAGCAAAAGCGT
ATTCAAACCAAATCACAATATTACAAATTTGTAACATGCTTTGTAATTCA
AGATTTAGGAGTGTGAGTACTGTAGAGACGATTGCTAGAAAGATTACGGA
CGGTATGGGTGTCCGTCGCTCTCTGTGAATAAGTGCAAAAAACCGCGGAA
ATTGTCCCTCCCGTGCTGCGGACATCATGAGGCGCGGAAGGTTATAAAAG
ACAGCGGAAAGAGCCGGTATGACACATATAGAAACAGCAAAAGGCACCAC
ATATGATAATGACTCTCCACCGATCTTGAAAGCAACATCTGAGAGAAAAA
CATTGGAAGTAGCAATCTCTTTATGTGTCAATACAGCAGCGCAAGCCAGA
TTGATCAAAATGTAAAGGAAGGTTACGAATGGTATTGAAGTGAAGGAGAG
TAAAGGAACAGCTTTCGAAGGGTTGATTACTTCTTCCACTATGAACGCTA
TAGTGACGTAACCATCAAAACAATACAATGCGTTGAATAAAGCAATCCCA
AAAGACGGAAACTCGTCACTTAATCCATTCAATGTGTTGTTGAAAACGAT
ATTCGTTTCAAAATGGTGGTAAGTGTTCCTGGCTGATAATGAATAGATAC
CTAAGCCAACAATCGTTGCAAAGACAAGCATTTGTATAGCCATAAAAACC
ATTTGGAAAATGCCAGATTTCTTTGCTCCCAGACAGTGAATGACTGATAT
ACAAAGCATAATAACAATCCCGACTAACTTCGACATCCATTGATATTCTG
GTGACGTGTGATCTTCATAGAAAGGTGCGCATGCGTACAGACCGATAGTC
AGGAGCAGGATACAAGCGTCGCATGGTGCGAATAGAAACACGTTAGCCCA
GTTGACTAAAAATCCAGCTGCTGGTCCGTAACAATCCAATATAAAGACAT
AAGAAGAGCCTGTCTTCTTAACTATAGAAGCCATTTCACAATAGCAAAGT
GCTCCAATCAACGCCACTAGACCAGCTACGATCCAAGCGAGTAGAGAAAC
AAACAGGTTTGGCGTTCTCTGGGCGATTAGTGAAGGCGTTACGAAGATAC
CCGCCCCAACCATACAACCAACAACGAATGAAAACGCATGGCGGAATTTC
ATCTCACGTCTCAAAGTGTTTTCTTCCGGAGGTTGATCCTTTTGAGATGA
AAGAGAGTTATTGGCAATTGCCAATGGTGGAGATTCTAGCGTCGTTTTCG
TGTTGATTCCATCAACAGGAGACAAAAACGTTGTCTCTGCTACTGAACCC
ATGTTATTTATTAACT
Run BLAST on NCBI

protein sequence of TCONS_00072751-protein

>TCONS_00072751-protein ID=TCONS_00072751-protein|Name=TCONS_00072751-protein|organism=Clytia hemisphaerica|type=polypeptide|length=521bp
LINNMGSVAETTFLSPVDGINTKTTLESPPLAIANNSLSSQKDQPPEENT
LRREMKFRHAFSFVVGCMVGAGIFVTPSLIAQRTPNLFVSLLAWIVAGLV
ALIGALCYCEMASIVKKTGSSYVFILDCYGPAAGFLVNWANVFLFAPCDA
CILLLTIGLYACAPFYEDHTSPEYQWMSKLVGIVIMLCISVIHCLGAKKS
GIFQMVFMAIQMLVFATIVGLGIYSLSARNTYHHFETNIVFNNTLNGLSD
EFPSFGIALFNALYCFDGYVTIAFIVEEVINPSKAVPLLSFTSIPFVTFL
YILINLACAAVLTHKEIATSNVFLSDVAFKIGGESLSYVVPFAVSICVIP
ALSAVFYNLPRLMMSAAREGQFPRFFALIHRERRTPIPSVIFLAIVSTVL
TLLNLELQSMLQICNIVIWFEYAFAVSTILVNRWRKPNMKRAYKTWLITP
IIMIVIPLILLILAIMEKSFITILILVLMMLGLPVYFVCLKKRWISSRLN
QFVYRILVNNTNLVECKINCE
Run BLAST on NCBI

transcript from alignment at scaffold_82:490441..492006

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072751 ID=TCONS_00072751|Name=TCONS_00072751|organism=Clytia hemisphaerica|type=transcript|length=1566bp|location=Sequence derived from alignment at scaffold_82:490441..492006 (Clytia hemisphaerica)
AGTTAATAAATAACATGGGTTCAGTAGCAGAGACAACGTTTTTGTCTCCT GTTGATGGAATCAACACGAAAACGACGCTAGAATCTCCACCATTGGCAAT TGCCAATAACTCTCTTTCATCTCAAAAGGATCAACCTCCGGAAGAAAACA CTTTGAGACGTGAGATGAAATTCCGCCATGCGTTTTCATTCGTTGTTGGT TGTATGGTTGGGGCGGGTATCTTCGTAACGCCTTCACTAATCGCCCAGAG AACGCCAAACCTGTTTGTTTCTCTACTCGCTTGGATCGTAGCTGGTCTAG TGGCGTTGATTGGAGCACTTTGCTATTGTGAAATGGCTTCTATAGTTAAG AAGACAGGCTCTTCTTATGTCTTTATATTGGATTGTTACGGACCAGCAGC TGGATTTTTAGTCAACTGGGCTAACGTGTTTCTATTCGCACCATGCGACG CTTGTATCCTGCTCCTGACTATCGGTCTGTACGCATGCGCACCTTTCTAT GAAGATCACACGTCACCAGAATATCAATGGATGTCGAAGTTAGTCGGGAT TGTTATTATGCTTTGTATATCAGTCATTCACTGTCTGGGAGCAAAGAAAT CTGGCATTTTCCAAATGGTTTTTATGGCTATACAAATGCTTGTCTTTGCA ACGATTGTTGGCTTAGGTATCTATTCATTATCAGCCAGGAACACTTACCA CCATTTTGAAACGAATATCGTTTTCAACAACACATTGAATGGATTAAGTG ACGAGTTTCCGTCTTTTGGGATTGCTTTATTCAACGCATTGTATTGTTTT GATGGTTACGTCACTATAGCGTTCATAGTGGAAGAAGTAATCAACCCTTC GAAAGCTGTTCCTTTACTCTCCTTCACTTCAATACCATTCGTAACCTTCC TTTACATTTTGATCAATCTGGCTTGCGCTGCTGTATTGACACATAAAGAG ATTGCTACTTCCAATGTTTTTCTCTCAGATGTTGCTTTCAAGATCGGTGG AGAGTCATTATCATATGTGGTGCCTTTTGCTGTTTCTATATGTGTCATAC CGGCTCTTTCCGCTGTCTTTTATAACCTTCCGCGCCTCATGATGTCCGCA GCACGGGAGGGACAATTTCCGCGGTTTTTTGCACTTATTCACAGAGAGCG ACGGACACCCATACCGTCCGTAATCTTTCTAGCAATCGTCTCTACAGTAC TCACACTCCTAAATCTTGAATTACAAAGCATGTTACAAATTTGTAATATT GTGATTTGGTTTGAATACGCTTTTGCTGTCTCCACCATATTGGTCAACCG GTGGCGTAAACCAAACATGAAACGAGCTTACAAAACATGGCTGATTACTC CTATAATAATGATCGTTATCCCCTTAATACTTTTAATCTTGGCTATTATG GAAAAGTCGTTCATTACCATATTAATTTTAGTGTTGATGATGCTTGGTTT ACCCGTTTACTTTGTTTGTTTGAAGAAACGATGGATTTCCAGTAGACTTA ATCAATTTGTATAtagaattttggttaataaCACTAATTTAGTCGAATGT AAAATTAATTGTGAAG

Coding sequence (CDS) from alignment at scaffold_82:490441..492006

>TCONS_00072751 ID=TCONS_00072751|Name=TCONS_00072751|organism=Clytia hemisphaerica|type=CDS|length=1563bp|location=Sequence derived from alignment at scaffold_82:490441..492006 (Clytia hemisphaerica)
TTAATAAATAACATGGGTTCAGTAGCAGAGACAACGTTTTTGTCTCCTGT
TGATGGAATCAACACGAAAACGACGCTAGAATCTCCACCATTGGCAATTG
CCAATAACTCTCTTTCATCTCAAAAGGATCAACCTCCGGAAGAAAACACT
TTGAGACGTGAGATGAAATTCCGCCATGCGTTTTCATTCGTTGTTGGTTG
TATGGTTGGGGCGGGTATCTTCGTAACGCCTTCACTAATCGCCCAGAGAA
CGCCAAACCTGTTTGTTTCTCTACTCGCTTGGATCGTAGCTGGTCTAGTG
GCGTTGATTGGAGCACTTTGCTATTGTGAAATGGCTTCTATAGTTAAGAA
GACAGGCTCTTCTTATGTCTTTATATTGGATTGTTACGGACCAGCAGCTG
GATTTTTAGTCAACTGGGCTAACGTGTTTCTATTCGCACCATGCGACGCT
TGTATCCTGCTCCTGACTATCGGTCTGTACGCATGCGCACCTTTCTATGA
AGATCACACGTCACCAGAATATCAATGGATGTCGAAGTTAGTCGGGATTG
TTATTATGCTTTGTATATCAGTCATTCACTGTCTGGGAGCAAAGAAATCT
GGCATTTTCCAAATGGTTTTTATGGCTATACAAATGCTTGTCTTTGCAAC
GATTGTTGGCTTAGGTATCTATTCATTATCAGCCAGGAACACTTACCACC
ATTTTGAAACGAATATCGTTTTCAACAACACATTGAATGGATTAAGTGAC
GAGTTTCCGTCTTTTGGGATTGCTTTATTCAACGCATTGTATTGTTTTGA
TGGTTACGTCACTATAGCGTTCATAGTGGAAGAAGTAATCAACCCTTCGA
AAGCTGTTCCTTTACTCTCCTTCACTTCAATACCATTCGTAACCTTCCTT
TACATTTTGATCAATCTGGCTTGCGCTGCTGTATTGACACATAAAGAGAT
TGCTACTTCCAATGTTTTTCTCTCAGATGTTGCTTTCAAGATCGGTGGAG
AGTCATTATCATATGTGGTGCCTTTTGCTGTTTCTATATGTGTCATACCG
GCTCTTTCCGCTGTCTTTTATAACCTTCCGCGCCTCATGATGTCCGCAGC
ACGGGAGGGACAATTTCCGCGGTTTTTTGCACTTATTCACAGAGAGCGAC
GGACACCCATACCGTCCGTAATCTTTCTAGCAATCGTCTCTACAGTACTC
ACACTCCTAAATCTTGAATTACAAAGCATGTTACAAATTTGTAATATTGT
GATTTGGTTTGAATACGCTTTTGCTGTCTCCACCATATTGGTCAACCGGT
GGCGTAAACCAAACATGAAACGAGCTTACAAAACATGGCTGATTACTCCT
ATAATAATGATCGTTATCCCCTTAATACTTTTAATCTTGGCTATTATGGA
AAAGTCGTTCATTACCATATTAATTTTAGTGTTGATGATGCTTGGTTTAC
CCGTTTACTTTGTTTGTTTGAAGAAACGATGGATTTCCAGTAGACTTAAT
CAATTTGTATAtagaattttggttaataaCACTAATTTAGTCGAATGTAA
AATTAATTGTGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045161XLOC_045161Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072751-proteinTCONS_00072751-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072751-exon-scaffold_82-1491911889:490441..492006TCONS_00072751-exon-scaffold_82-1491911889:490441..492006Clytia hemisphaericaexon
TCONS_00072751-exon-scaffold_82-1510915933:490441..492006TCONS_00072751-exon-scaffold_82-1510915933:490441..492006Clytia hemisphaericaexon
TCONS_00072751-exon-scaffold_82-1575043694:490441..492006TCONS_00072751-exon-scaffold_82-1575043694:490441..492006Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_82supercontigscaffold_82:490441..492006 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.13731 2.88091 2.57536 3.24361 1.05771 1.28158 1.0756 0.849627 0.52875 1.09157 0.503265 0.261179 1.77355 1.49876 1.08373 1.59316 1.60936 2.01164 4.66904 3.98427 1.28916 0.554832 3.89694 3.81542 1.26315 3.05631 2.61697 2.60161 1.82814 1.83302
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002293AA/rel_permease1
Vocabulary: Molecular Function
TermDefinition
GO:0015171amino acid transmembrane transporter activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0003333amino acid transmembrane transport
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0003333 amino acid transmembrane transport
cellular_component GO:0016020 membrane
molecular_function GO:0015171 amino acid transmembrane transporter activity
Blast
BLAST of TCONS_00072751 vs. Swiss-Prot (Human)
Match: BAT1 (b(0,+)-type amino acid transporter 1 OS=Homo sapiens GN=SLC7A9 PE=1 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 6.630e-58
Identity = 117/409 (28.61%), Postives = 210/409 (51.34%), Query Frame = -3
Query:  233 SSQKDQPPEENTLRREMKFRHAFSFVVGCMVGAGIFVTPSLIAQRTPNLFVSLLAWIVAGLVALIGALCYCEMASIVKKTGSSYVFILDCYGPAAGFLVNWANVFLFAPCDACILLLTIGLYACAPFYEDHTSPEYQWMSKLVGIVIMLCISVIHCLGAKKSGIFQMVFMAIQMLVFATIVGLGIYSLSARNTYHHFETNIVFNNTLNGLSDEFPSFGIALFNALYCFDGYVTIAFIVEEVINPSKAVPLLSFTSIPFVTFLYILINLACAAVLTHKEIATSNVFLSDVAFKIGGESL---SYVVPFAVSICVIPALSAVFYNLPRLMMSAAREGQFPRFFALIHRERRTPIPSVIFLAIVSTVLTLLNLELQSMLQICNIVIWFEYAFAVSTILVNRWRKPNMKRAYK 1450
             S + Q P+  +L++E+      S +VG ++G+GIFV+P  +   T  +   L+ W   G++A +GALC+ E+ +++ K+G  Y ++++ YGP   +L +WA++ +  P    I+ L+   Y CAPFY     P  Q + K +    +L IS ++ L  +     Q +F A ++++ A I+  G+  L+  NT +       F+N+  G      +  +A +N L+ +DG+  + +I EE+ NP + +PL     IP VT  YIL+N++   V+T  E+  S      VA   G   L   S++VP  V+   I A +   +   RL+  A REG   +  + I   R TP P++IF  I++T+  +   ++ S++   +   W  Y   +  ++V R+ +  ++R  K
Sbjct:   14 KSIQSQEPKTTSLQKELGLISGISIIVGTIIGSGIFVSPKSVLSNTEAVGPCLIIWAACGVLATLGALCFAELGTMITKSGGEYPYLMEAYGPIPAYLFSWASLIVIKPTSFAIICLSFSEYVCAPFYVGCKPP--QIVVKCLAAAAILFISTVNSLSVRLGSYVQNIFTAAKLVIVAIIIISGLVLLAQGNTKN-------FDNSFEGAQLSVGAISLAFYNGLWAYDGWNQLNYITEELRNPYRNLPLAIIIGIPLVTACYILMNVSYFTVMTATELLQSQA----VAVTFGDRVLYPASWIVPLFVAFSTIGAANGTCFTAGRLIYVAGREGHMLKVLSYISVRRLTPAPAIIFYGIIATIYIIPG-DINSLVNYFSFAAWLFYGLTILGLIVMRFTRKELERPIK 408          
The following BLAST results are available for this feature:
BLAST of TCONS_00072751 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
BAT16.630e-5828.61b(0,+)-type amino acid transporter 1 OS=Homo sapie... [more]
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