TCONS_00072710 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072710
Unique NameTCONS_00072710
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1913

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072710 ID=TCONS_00072710|Name=TCONS_00072710|organism=Clytia hemisphaerica|type=transcript|length=1913bp
cgaaattaaaaaaaatttattttgctgTCCTTACTGCGATTTTTTTGCTC
TTGCTTTGCAGAAGAAACAACGTTGAAAATAAGATCTTGGAGGTTGAAAA
GATGAGAGAGTGTATTTCAATCCACGTTGGACAAGCTGGTTGTCAAATCG
GTAACTCATGCTGGGAATTGTATTGTTTGGAACATGGAATCTCCCCCGAT
GGAACAGCTACCAATGAAATCACTGGAGATGAATCGTTCAGTACTTTCTT
TAGCGAAACGGGTGCTGGAAGACATGTTCCAAGAGCTGTTTTCGTTGATT
TGGAACCATCGGTTATTGATGAAATTCGATGCAGTACCTACAAATCCCTC
TTCCATCCTGACCAAATGATCGCTGGTAAAGAAGACGCCGCTAACAATTA
CGCCAGAGGTCATTACACCGTCGGTAAAGAGTACATCGACCGAACTTTGG
ATCATATCCGTAAATTGGCGGATCAGTGCACTGGTCTTCAAGGATTCTTG
TTGTTCCATTCCTTTGGTGGAGGTACCGGATCTGGTTTCTCGTCTCTCCT
CTTGGAAAGATTATCCATTGATTTTGGTAAAAAAGCCAAATTGGAATTTG
CTGTTTATCCAGCACCACAAGTCTCCACAGCTGTTGTTGAACCATACAAC
TCTGTCTTGACCACACATACCACTTTGGAGCACTCCGATTGCACTTTCAT
GGTGGATAATGAAGCTATCTATGATATCTGTCGCAAGAATCTGGACGTCG
AGCGTCCATCATATCACAATCTGAACCGAATGATCAGTCAAGTTGTTTCC
TCAGTCACTGCATCTCTTAGATTTGACGGCTCCTTGAATGTCGATTTGAA
TGAATTCCAAACCAACTTGGTTCCATACCCTAGAATCCATTTCCCGATGG
CCACTTATGCTCCTTTAGTTTCTGCTGAGAAAGCATACCACGAAAATCAT
TCAGTTCAAGAAATCACAAATGCTTGTTTTGAGCCTCAAAATCAACTAGT
CAAATGTGATCCAAGACACGGCAAATACATGTCTTGTTGTCTTCTCTACC
GTGGAGATGTGGTCCCAAAAGATGTCAATGCTTCCATCTCTGCCTTGAAA
ACTAAACGCACTATTCAATTCGTCGATTGGTGTCCAACCGGATTCAAAAT
CGGAATCAATTACCAGCCACCAACTATTGTTCCTGGAGCAGACATGGCTA
AAGTTTCCAGAGCTGTTTGCATGTTGTCTAACACAACTGCCATTGCTGAA
GCATGGGCTCGTCTTGATCATAAATTCGATTTAATGTACGCAAAACGTGC
TTTTGTGCACTGGTATGTCGGAGAAGGTATGGAAGAAGGTGAGTTCTCGG
AGGCTCGTGAAGATTTAGCTGCTCTTGAGAAAGATTACGAAGAGGTCGGA
ATGGATTCAGCAGATTGCGAAGACGAAGAAGATGAAGATTATTGAGGCTA
GAAATTTGTAGAAAAGAACTAttagaaattaataaaatgGAAGAGCTTTC
GACAATATTTGTTTATCAAGATTGACCAAATTTTAATTACAGAGTAATCT
AATTGGATGAGTTGTTTTTATTCCAGGTATTTTGGAATCATTGATTAAAT
TATTGGTTGCGTTTAAAATTATCTTTTAGTAAATTTTTCTCTCGTGTGCA
TTGTTAactatttttgaatatttaaacatattaactttctttatttttga
aatctaatgACATTTTAGCAAGTTATActttttatctaaaaagctaTTTT
TTCTTTGTCTAGTGTCTTCGTTAAAATCTTTCGCTCCGAAGAAATAAATT
AGACAAGAAACTAATCTCAGCAAGTCCAAAATTCACTCAAAACAGGTGTA
ATAGAAGTTACGACAAGTGGAAAATTCTATTTCTCCTAGTTGAAAAACCT
CCCGAGGGGAAAC
Run BLAST on NCBI

protein sequence of TCONS_00072710-protein

>TCONS_00072710-protein ID=TCONS_00072710-protein|Name=TCONS_00072710-protein|organism=Clytia hemisphaerica|type=polypeptide|length=480bp
KLKKIYFAVLTAIFLLLLCRRNNVENKILEVEKMRECISIHVGQAGCQIG
NSCWELYCLEHGISPDGTATNEITGDESFSTFFSETGAGRHVPRAVFVDL
EPSVIDEIRCSTYKSLFHPDQMIAGKEDAANNYARGHYTVGKEYIDRTLD
HIRKLADQCTGLQGFLLFHSFGGGTGSGFSSLLLERLSIDFGKKAKLEFA
VYPAPQVSTAVVEPYNSVLTTHTTLEHSDCTFMVDNEAIYDICRKNLDVE
RPSYHNLNRMISQVVSSVTASLRFDGSLNVDLNEFQTNLVPYPRIHFPMA
TYAPLVSAEKAYHENHSVQEITNACFEPQNQLVKCDPRHGKYMSCCLLYR
GDVVPKDVNASISALKTKRTIQFVDWCPTGFKIGINYQPPTIVPGADMAK
VSRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE
AREDLAALEKDYEEVGMDSADCEDEEDEDY
Run BLAST on NCBI

transcript from alignment at scaffold_82:502246..506111+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072710 ID=TCONS_00072710|Name=TCONS_00072710|organism=Clytia hemisphaerica|type=transcript|length=3866bp|location=Sequence derived from alignment at scaffold_82:502246..506111+ (Clytia hemisphaerica)
cgaaattaaaaaaaatttattttgctgTCCTTACTGCGATTTTTTTGCTC TTGCTTTGCAGAAGAAACAACGTTGAAAATAAGATCTTGGAGGTTGAAAA GATGGtaaacttatttctttaaaattgtttGATCCAACTTCCAAAAGAAA ACCCAGAAAGAACGGGTACGGGGAATATATATAATCTCCAATATGGCAAT TTACGAGATATACTGTAGACCTTAAAATTCTGACGAAGTATTACTTTGAC AAGACTTATCGTGAGGCATTGAGAGATTTTAgaagtatatttaaaaaaaa aaaaaaagactttagcTAGACATTACATTACGTGTCAATATGGCAAACGC AAATTAATTTGCGGATATTTTAGTGAATAGCATTTCATAATTACAAAAAC AATTTCGTTTCTCTCTCAATCGGATGCAATTCAGTTGTAAAGAGTAATTT ACGTCTGTACAACCCATTTCTTTCAAAGACATTTGAATTGTGTAAGACGA AAAACAAAACCCAGAATAAACGCAATAGCTTGTAGAACCAATGCAAAAAG ACCTAGAGGTCATCAAAAATGGGGATCATTCCTTTCCCTCAGTATCTTAA TCAACGTGGTTTTGCGACTGGAGCTATTCATCCCTTATGCTAAAATCATT ATAAAGTGATTGAAGCCCGATTGAAGGGGCTACAGAGGAATCTTCAATCT TTCTCAACTCAAGCTAGCAAAAGTTCAGCattaagattttaaattttgtg tgAAAATGCTACATAAAGTTTTAAAGTTAATGAATAGTTCAATTGGATTT AATCGTTTGATTCCGTTCCCAATTTTTAGAGAGAGTGTATTTCAATCCAC GTTGGACAAGCTGGTTGTCAAATCGGTAACTCATGCTGGGAATTGTATTG TTTGGAACATGGAATCTCCCCCGATGGAACAGCTACCAATGAAATCACTG GAGATGAATCGTTCAGTACTTTCTTTAGCGAAACGGGTGCTGGAAGACAT GTTCCAAGAGCTGTTTTCGTTGATTTGGAACCATCGGTTATTGGTAAGAT TCTTTGCAGCAAACATCAAAACCTCGTCTATCTAAATTAGCCTATCTCAA ATGATTCACTCATCTGTTACATGCTTTTTTATTCGAATTCAATTGATTTG AGGAAATTCATGAACTTTCTTCTATTGCTGTTGATTTTGTAAAACTCAAT TCGTAAAAGAGTGTTCAAACATTAAAAGTTGAGTACTATGGTGACGTAGA AAAATatcatgtactgaaaacacGAATCCTATAAAATGTCAAGGTGAACT TTGAGCTGACATAGTTTGGTGTCTGAAATTGACTGGAATTGACTTTTAGA GATACATCCTTTCAATTCAACTAACACTTTATTCAAAGTTGTTTGATACT TTAGATGCGGATCAGAATGCAACATGCAAAATAGTTCTTCTGTTCAAACA CAAGCAGAAAGACTTTTTATTGAAGGACCTCAGATTTTCAGAAATCTAGA GGAAGAACATAGGTGGTTTTAGACCCTGTAGAACTTATCAgatatttgta attgtaattcattgtttttttaacGAGCGTTACGCTCCTTCGCATGTTCC CGACGTACTCGCTCTTGAATATTGTATCATTGTTTGATTATATATTGTAG TTGAACACCATTTAAGAGTGCTCGATAACTGTGTAGAGCCAttcataaat ttatttcaagATTTCACTGTTAAAAAAGTACATTACTTCGAGTTTCATGC TTACGGCAAATCATCAGACGTACAAATAAAAACACTTTCCTATATTTATT TACAGATGAAATTCGATGCAGTACCTACAAATCCCTCTTCCATCCTGACC AAATGATCGCTGGTAAAGAAGACGCCGCTAACAATTACGCCAGAGGTCAT TACACCGTCGGTAAAGAGTACATCGACCGAACTTTGGATCATATCCGTAA ATTGGCGGATCAGTGCACTGGTCTTCAAGGATTCTTGTTGTTCCATTCCT TTGGTGGAGGTACCGGATCTGGTTTCTCGTCTCTCCTCTTGGAAAGATTA TCCATTGATTTTGGTAAAAAAGCCAAATTGGAATTTGCTGTTTATCCAGC ACCACAAGTCTCCACAGCTGTTGTTGAACCATACAACTCTGTCTTGACCA CACATACCACTTTGGAGCACTCCGATTGCACTTTCATGGTGGATAATGAA GCTATCTATGATATCTGTCGCAAGAATCTGGACGTCGAGCGTCCATCATA TCACAATCTGAACCGAATGATCAGTCAAGTTGTTTCCTCAGTCACTGCAT CTCTTAGATTTGACGGCTCCTTGAATGTCGATTTGAATGAATTCCAAACC AACTTGGTTCCATACCCTAGAATCCATTTCCCGATGGCCACTTATGCTCC TTTAGTTTCTGCTGAGAAAGCATACCACGAAAATCATTCAGTTCAAGAAA TCACAAATGCTTGTTTTGAGCCTCAAAATCAACTAGTCAAATGTGATCCA AGACACGGCAAATACATGTCTTGTTGTCTTCTCTACCGTGGAGATGTGGT CCCAAAAGATGTCAATGCTTCCATCTCTGCCTTGAAAACTAAACGCACTA TTCAATTCGTCGATTGGTGTCCAACCGGATTCAAAATCGGAATCAATTAC CAGCCACCAACTATTGTTCCTGGAGCAGACATGGCTAAAGTTTCCAGAGC TGTTTGCATGTTGTCTAACACAACTGCCATTGCTGAAGCATGGGCTCGTC TTGATCATAAATTCGATTTAATGTACGCAAAACGTGCTTTTGTGCACTGG TATGTCGGAGAAGGTAAGTTgcagtattttcaaaaataactgaTGAGGTT TATCAGTAGGCGAAGGAATCTTACTAAAACCTACCAACCTAATAGTGATT TCAGCAAACCCAAGGTCCTCTTTGTATATGGATAGCTAGCTGTCTACTCA AAATTACGACCGTAGCAGAATGCTATACCTTTATACTAAGGTCACGTGGT CTTACttctgttgttgttgctgttgttggtCTCATTAGGATTTAGCTTGA CTCATTTTCCATAAAcataccgagtttatcgttctacatctgaaatttta gttttgctaagctcatttgacgtcaatcgatacCTCGATTGTTAAGTGtg tgtgaaggtttcgatcacagacttgcaccgcaatggactgtgttcgaatt cCAAGCACTGCCAgacagggtgttagggaaatatggtgataccTTCACTC ATACGTCAATTTCTATATTTCATTTCTAGGTATGGAAGAAGGTGAGTTCT CGGAGGCTCGTGAAGATTTAGCTGCTCTTGAGAAAGATTACGAAGAGGTC GGAATGGATTCAGCAGATTGCGAAGACGAAGAAGATGAAGATTATTGAGG CTAGAAATTTGTAGAAAAGAACTAttagaaattaataaaatgGAAGAGCT TTCGACAATATTTGTTTATCAAGATTGACCAAATTTTAATTACAGAGTAA TCTAATTGGATGAGTTGTTTTTATTCCAGGTATTTTGGAATCATTGATTA AATTATTGGTTGCGTTTAAAATTATCTTTTAGTAAATTTTTCTCTCGTGT GCATTGTTAactatttttgaatatttaaacatattaactttctttatttt tgaaatctaatgACATTTTAGCAAGTTATActttttatctaaaaagctaT TTTTTCTTTGTCTAGTGTCTTCGTTAAAATCTTTCGCTCCGAAGAAATAA ATTAGACAAGAAACTAATCTCAGCAAGTCCAAAATTCACTCAAAACAGGT GTAATAGAAGTTACGACAAGTGGAAAATTCTATTTCTCCTAGTTGAAAAA CCTCCCGAGGGGAAAC

Coding sequence (CDS) from alignment at scaffold_82:502246..506111+

>TCONS_00072710 ID=TCONS_00072710|Name=TCONS_00072710|organism=Clytia hemisphaerica|type=CDS|length=5772bp|location=Sequence derived from alignment at scaffold_82:502246..506111+ (Clytia hemisphaerica)
aaattaaaaaaaatttattttgctgTCCTTACTGCGATTTTTTTGCTCTT
GCTTTGCAGAAGAAACAACGTTGAAAATAAGATCTTGGAGGTTGAAAAGA
TGAGAGAGTGTATTTCAATCCACGTTGGACAAGCTGGTTGTCAAATCGGT
AACTCATGCTGGGAATTGTATTGTTTGGAACATGGAATCTCCCCCGATGG
AACAGCTACCAATGAAATCACTGGAGATGAATCGTTCAGTACTTTCTTTA
GCGAAACGGGTGCTGGAAGACATGTTCCAAGAGCTGTTTTCGTTGATTTG
GAACCATCGGTTATTGATGAAATTCGATGCAGTACCTACAAATCCCTCTT
CCATCCTGACCAAATGATCGCTGGTAAAGAAGACGCCGCTAACAATTACG
CCAGAGGTCATTACACCGTCGGTAAAGAGTACATCGACCGAACTTTGGAT
CATATCCGTAAATTGGCGGATCAGTGCACTGGTCTTCAAGGATTCTTGTT
GTTCCATTCCTTTGGTGGAGGTACCGGATCTGGTTTCTCGTCTCTCCTCT
TGGAAAGATTATCCATTGATTTTGGTAAAAAAGCCAAATTGGAATTTGCT
GTTTATCCAGCACCACAAGTCTCCACAGCTGTTGTTGAACCATACAACTC
TGTCTTGACCACACATACCACTTTGGAGCACTCCGATTGCACTTTCATGG
TGGATAATGAAGCTATCTATGATATCTGTCGCAAGAATCTGGACGTCGAG
CGTCCATCATATCACAATCTGAACCGAATGATCAGTCAAGTTGTTTCCTC
AGTCACTGCATCTCTTAGATTTGACGGCTCCTTGAATGTCGATTTGAATG
AATTCCAAACCAACTTGGTTCCATACCCTAGAATCCATTTCCCGATGGCC
ACTTATGCTCCTTTAGTTTCTGCTGAGAAAGCATACCACGAAAATCATTC
AGTTCAAGAAATCACAAATGCTTGTTTTGAGCCTCAAAATCAACTAGTCA
AATGTGATCCAAGACACGGCAAATACATGTCTTGTTGTCTTCTCTACCGT
GGAGATGTGGTCCCAAAAGATGTCAATGCTTCCATCTCTGCCTTGAAAAC
TAAACGCACTATTCAATTCGTCGATTGGTGTCCAACCGGATTCAAAATCG
GAATCAATTACCAGCCACCAACTATTGTTCCTGGAGCAGACATGGCTAAA
GTTTCCAGAGCTGTTTGCATGTTGTCTAACACAACTGCCATTGCTGAAGC
ATGGGCTCGTCTTGATCATAAATTCGATTTAATGTACGCAAAACGTGCTT
TTGTGCACTGGTATGTCGGAGAAGGTATGGAAGAAGGTGAGTTCTCGGAG
GCTCGTGAAGATTTAGCTGCTCTTGAGAAAGATTACGAAGAGGTCGGAAT
GGATTCAGCAGATTGCGAAGACGAAGAAGATGAAGATTATTGAaaattaa
aaaaaatttattttgctgTCCTTACTGCGATTTTTTTGCTCTTGCTTTGC
AGAAGAAACAACGTTGAAAATAAGATCTTGGAGGTTGAAAAGATGAGAGA
GTGTATTTCAATCCACGTTGGACAAGCTGGTTGTCAAATCGGTAACTCAT
GCTGGGAATTGTATTGTTTGGAACATGGAATCTCCCCCGATGGAACAGCT
ACCAATGAAATCACTGGAGATGAATCGTTCAGTACTTTCTTTAGCGAAAC
GGGTGCTGGAAGACATGTTCCAAGAGCTGTTTTCGTTGATTTGGAACCAT
CGGTTATTGATGAAATTCGATGCAGTACCTACAAATCCCTCTTCCATCCT
GACCAAATGATCGCTGGTAAAGAAGACGCCGCTAACAATTACGCCAGAGG
TCATTACACCGTCGGTAAAGAGTACATCGACCGAACTTTGGATCATATCC
GTAAATTGGCGGATCAGTGCACTGGTCTTCAAGGATTCTTGTTGTTCCAT
TCCTTTGGTGGAGGTACCGGATCTGGTTTCTCGTCTCTCCTCTTGGAAAG
ATTATCCATTGATTTTGGTAAAAAAGCCAAATTGGAATTTGCTGTTTATC
CAGCACCACAAGTCTCCACAGCTGTTGTTGAACCATACAACTCTGTCTTG
ACCACACATACCACTTTGGAGCACTCCGATTGCACTTTCATGGTGGATAA
TGAAGCTATCTATGATATCTGTCGCAAGAATCTGGACGTCGAGCGTCCAT
CATATCACAATCTGAACCGAATGATCAGTCAAGTTGTTTCCTCAGTCACT
GCATCTCTTAGATTTGACGGCTCCTTGAATGTCGATTTGAATGAATTCCA
AACCAACTTGGTTCCATACCCTAGAATCCATTTCCCGATGGCCACTTATG
CTCCTTTAGTTTCTGCTGAGAAAGCATACCACGAAAATCATTCAGTTCAA
GAAATCACAAATGCTTGTTTTGAGCCTCAAAATCAACTAGTCAAATGTGA
TCCAAGACACGGCAAATACATGTCTTGTTGTCTTCTCTACCGTGGAGATG
TGGTCCCAAAAGATGTCAATGCTTCCATCTCTGCCTTGAAAACTAAACGC
ACTATTCAATTCGTCGATTGGTGTCCAACCGGATTCAAAATCGGAATCAA
TTACCAGCCACCAACTATTGTTCCTGGAGCAGACATGGCTAAAGTTTCCA
GAGCTGTTTGCATGTTGTCTAACACAACTGCCATTGCTGAAGCATGGGCT
CGTCTTGATCATAAATTCGATTTAATGTACGCAAAACGTGCTTTTGTGCA
CTGGTATGTCGGAGAAGGTATGGAAGAAGGTGAGTTCTCGGAGGCTCGTG
AAGATTTAGCTGCTCTTGAGAAAGATTACGAAGAGGTCGGAATGGATTCA
GCAGATTGCGAAGACGAAGAAGATGAAGATTATTGAaaattaaaaaaaat
ttattttgctgTCCTTACTGCGATTTTTTTGCTCTTGCTTTGCAGAAGAA
ACAACGTTGAAAATAAGATCTTGGAGGTTGAAAAGATGAGAGAGTGTATT
TCAATCCACGTTGGACAAGCTGGTTGTCAAATCGGTAACTCATGCTGGGA
ATTGTATTGTTTGGAACATGGAATCTCCCCCGATGGAACAGCTACCAATG
AAATCACTGGAGATGAATCGTTCAGTACTTTCTTTAGCGAAACGGGTGCT
GGAAGACATGTTCCAAGAGCTGTTTTCGTTGATTTGGAACCATCGGTTAT
TGATGAAATTCGATGCAGTACCTACAAATCCCTCTTCCATCCTGACCAAA
TGATCGCTGGTAAAGAAGACGCCGCTAACAATTACGCCAGAGGTCATTAC
ACCGTCGGTAAAGAGTACATCGACCGAACTTTGGATCATATCCGTAAATT
GGCGGATCAGTGCACTGGTCTTCAAGGATTCTTGTTGTTCCATTCCTTTG
GTGGAGGTACCGGATCTGGTTTCTCGTCTCTCCTCTTGGAAAGATTATCC
ATTGATTTTGGTAAAAAAGCCAAATTGGAATTTGCTGTTTATCCAGCACC
ACAAGTCTCCACAGCTGTTGTTGAACCATACAACTCTGTCTTGACCACAC
ATACCACTTTGGAGCACTCCGATTGCACTTTCATGGTGGATAATGAAGCT
ATCTATGATATCTGTCGCAAGAATCTGGACGTCGAGCGTCCATCATATCA
CAATCTGAACCGAATGATCAGTCAAGTTGTTTCCTCAGTCACTGCATCTC
TTAGATTTGACGGCTCCTTGAATGTCGATTTGAATGAATTCCAAACCAAC
TTGGTTCCATACCCTAGAATCCATTTCCCGATGGCCACTTATGCTCCTTT
AGTTTCTGCTGAGAAAGCATACCACGAAAATCATTCAGTTCAAGAAATCA
CAAATGCTTGTTTTGAGCCTCAAAATCAACTAGTCAAATGTGATCCAAGA
CACGGCAAATACATGTCTTGTTGTCTTCTCTACCGTGGAGATGTGGTCCC
AAAAGATGTCAATGCTTCCATCTCTGCCTTGAAAACTAAACGCACTATTC
AATTCGTCGATTGGTGTCCAACCGGATTCAAAATCGGAATCAATTACCAG
CCACCAACTATTGTTCCTGGAGCAGACATGGCTAAAGTTTCCAGAGCTGT
TTGCATGTTGTCTAACACAACTGCCATTGCTGAAGCATGGGCTCGTCTTG
ATCATAAATTCGATTTAATGTACGCAAAACGTGCTTTTGTGCACTGGTAT
GTCGGAGAAGGTATGGAAGAAGGTGAGTTCTCGGAGGCTCGTGAAGATTT
AGCTGCTCTTGAGAAAGATTACGAAGAGGTCGGAATGGATTCAGCAGATT
GCGAAGACGAAGAAGATGAAGATTATTGAaaattaaaaaaaatttatttt
gctgTCCTTACTGCGATTTTTTTGCTCTTGCTTTGCAGAAGAAACAACGT
TGAAAATAAGATCTTGGAGGTTGAAAAGATGAGAGAGTGTATTTCAATCC
ACGTTGGACAAGCTGGTTGTCAAATCGGTAACTCATGCTGGGAATTGTAT
TGTTTGGAACATGGAATCTCCCCCGATGGAACAGCTACCAATGAAATCAC
TGGAGATGAATCGTTCAGTACTTTCTTTAGCGAAACGGGTGCTGGAAGAC
ATGTTCCAAGAGCTGTTTTCGTTGATTTGGAACCATCGGTTATTGATGAA
ATTCGATGCAGTACCTACAAATCCCTCTTCCATCCTGACCAAATGATCGC
TGGTAAAGAAGACGCCGCTAACAATTACGCCAGAGGTCATTACACCGTCG
GTAAAGAGTACATCGACCGAACTTTGGATCATATCCGTAAATTGGCGGAT
CAGTGCACTGGTCTTCAAGGATTCTTGTTGTTCCATTCCTTTGGTGGAGG
TACCGGATCTGGTTTCTCGTCTCTCCTCTTGGAAAGATTATCCATTGATT
TTGGTAAAAAAGCCAAATTGGAATTTGCTGTTTATCCAGCACCACAAGTC
TCCACAGCTGTTGTTGAACCATACAACTCTGTCTTGACCACACATACCAC
TTTGGAGCACTCCGATTGCACTTTCATGGTGGATAATGAAGCTATCTATG
ATATCTGTCGCAAGAATCTGGACGTCGAGCGTCCATCATATCACAATCTG
AACCGAATGATCAGTCAAGTTGTTTCCTCAGTCACTGCATCTCTTAGATT
TGACGGCTCCTTGAATGTCGATTTGAATGAATTCCAAACCAACTTGGTTC
CATACCCTAGAATCCATTTCCCGATGGCCACTTATGCTCCTTTAGTTTCT
GCTGAGAAAGCATACCACGAAAATCATTCAGTTCAAGAAATCACAAATGC
TTGTTTTGAGCCTCAAAATCAACTAGTCAAATGTGATCCAAGACACGGCA
AATACATGTCTTGTTGTCTTCTCTACCGTGGAGATGTGGTCCCAAAAGAT
GTCAATGCTTCCATCTCTGCCTTGAAAACTAAACGCACTATTCAATTCGT
CGATTGGTGTCCAACCGGATTCAAAATCGGAATCAATTACCAGCCACCAA
CTATTGTTCCTGGAGCAGACATGGCTAAAGTTTCCAGAGCTGTTTGCATG
TTGTCTAACACAACTGCCATTGCTGAAGCATGGGCTCGTCTTGATCATAA
ATTCGATTTAATGTACGCAAAACGTGCTTTTGTGCACTGGTATGTCGGAG
AAGGTATGGAAGAAGGTGAGTTCTCGGAGGCTCGTGAAGATTTAGCTGCT
CTTGAGAAAGATTACGAAGAGGTCGGAATGGATTCAGCAGATTGCGAAGA
CGAAGAAGATGAAGATTATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045131XLOC_045131Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072710-exon-scaffold_82-1491911889:502246..502349TCONS_00072710-exon-scaffold_82-1491911889:502246..502349Clytia hemisphaericaexon
TCONS_00072710-exon-scaffold_82-1510915933:502246..502349TCONS_00072710-exon-scaffold_82-1510915933:502246..502349Clytia hemisphaericaexon
TCONS_00072710-exon-scaffold_82-1575043694:502246..502349TCONS_00072710-exon-scaffold_82-1575043694:502246..502349Clytia hemisphaericaexon
TCONS_00072710-exon-scaffold_82-1491911889:503075..503288TCONS_00072710-exon-scaffold_82-1491911889:503075..503288Clytia hemisphaericaexon
TCONS_00072710-exon-scaffold_82-1510915933:503075..503288TCONS_00072710-exon-scaffold_82-1510915933:503075..503288Clytia hemisphaericaexon
TCONS_00072710-exon-scaffold_82-1575043694:503075..503288TCONS_00072710-exon-scaffold_82-1575043694:503075..503288Clytia hemisphaericaexon
TCONS_00072710-exon-scaffold_82-1491911889:504051..505058TCONS_00072710-exon-scaffold_82-1491911889:504051..505058Clytia hemisphaericaexon
TCONS_00072710-exon-scaffold_82-1510915933:504051..505058TCONS_00072710-exon-scaffold_82-1510915933:504051..505058Clytia hemisphaericaexon
TCONS_00072710-exon-scaffold_82-1575043694:504051..505058TCONS_00072710-exon-scaffold_82-1575043694:504051..505058Clytia hemisphaericaexon
TCONS_00072710-exon-scaffold_82-1491911889:505525..506111TCONS_00072710-exon-scaffold_82-1491911889:505525..506111Clytia hemisphaericaexon
TCONS_00072710-exon-scaffold_82-1510915933:505525..506111TCONS_00072710-exon-scaffold_82-1510915933:505525..506111Clytia hemisphaericaexon
TCONS_00072710-exon-scaffold_82-1575043694:505525..506111TCONS_00072710-exon-scaffold_82-1575043694:505525..506111Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072710-proteinTCONS_00072710-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_82supercontigscaffold_82:502246..506111 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0.282393 0.00676982 6.40628e-09 1.26584 0.976239 1.0672 1.95428e-08 14.3311 8.08497 20.8606 19.2356 9.66758 11.1015 11.139 14.5508 36.3047 49.6734 26.8469 14.9813 126.129 124.523 12.3299 19.4551 0.0749438 4.02133 15.4584 6.15558 66.8154 77.0676
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002452Alpha_tubulin
IPR000217Tubulin
IPR018316Tubulin/FtsZ_2-layer-sand-dom
IPR003008Tubulin_FtsZ_GTPase
IPR017975Tubulin_CS
IPR008280Tub_FtsZ_C
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0005200structural constituent of cytoskeleton
GO:0003924GTPase activity
Vocabulary: Cellular Component
TermDefinition
GO:0005874microtubule
Vocabulary: Biological Process
TermDefinition
GO:0007017microtubule-based process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007017 microtubule-based process
cellular_component GO:0005874 microtubule
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
molecular_function GO:0005200 structural constituent of cytoskeleton
Blast
BLAST of TCONS_00072710 vs. Swiss-Prot (Human)
Match: TBA1C (Tubulin alpha-1C chain OS=Homo sapiens GN=TUBA1C PE=1 SV=1)

HSP 1 Score: 761.14 bits (1964), Expect = 0.000e+0
Identity = 370/440 (84.09%), Postives = 412/440 (93.64%), Query Frame = 3
Query:  102 MRECISIHVGQAGCQIGNSCWELYCLEHGISPDGTATNEIT---GDESFSTFFSETGAGRHVPRAVFVDLEPSVIDEIRCSTYKSLFHPDQMIAGKEDAANNYARGHYTVGKEYIDRTLDHIRKLADQCTXXXXXXXXXXXXXXXXXXXXXXXXERLSIDFGKKAKLEFAVYPAPQVSTAVVEPYNSVLTTHTTLEHSDCTFMVDNEAIYDICRKNLDVERPSYHNLNRMISQVVSSVTASLRFDGSLNVDLNEFQTNLVPYPRIHFPMATYAPLVSAEKAYHENHSVQEITNACFEPQNQLVKCDPRHGKYMSCCLLYRGDVVPKDVNASISALKTKRTIQFVDWCPTGFKIGINYQPPTIVPGADMAKVSRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGMDSA 1412
            MRECISIHVGQAG QIGN+CWELYCLEHGI PDG   ++ T   GD+SF+TFFSETGAG+HVPRAVFVDLEP+VIDE+R  TY+ LFHP+Q+I GKEDAANNYARGHYT+GKE ID  LD IRKLADQCTGLQGFL+FHSFGGGTGSGF+SLL+ERLS+D+GKK+KLEF++YPAPQVSTAVVEPYNS+LTTHTTLEHSDC FMVDNEAIYDICR+NLD+ERP+Y NLNR+ISQ+VSS+TASLRFDG+LNVDL EFQTNLVPYPRIHFP+ATYAP++SAEKAYHE  +V EITNACFEP NQ+VKCDPRHGKYM+CCLLYRGDVVPKDVNA+I+ +KTKRTIQFVDWCPTGFK+GINYQPPT+VPG D+AKV RAVCMLSNTTA+AEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEARED+AALEKDYEEVG DSA
Sbjct:    1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAVAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGADSA 440          
The following BLAST results are available for this feature:
BLAST of TCONS_00072710 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TBA1C0.000e+084.09Tubulin alpha-1C chain OS=Homo sapiens GN=TUBA1C P... [more]
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