TCONS_00072710-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00072710-protein
Unique NameTCONS_00072710-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length480

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00072710-protein ID=TCONS_00072710-protein|Name=TCONS_00072710-protein|organism=Clytia hemisphaerica|type=polypeptide|length=480bp
KLKKIYFAVLTAIFLLLLCRRNNVENKILEVEKMRECISIHVGQAGCQIG
NSCWELYCLEHGISPDGTATNEITGDESFSTFFSETGAGRHVPRAVFVDL
EPSVIDEIRCSTYKSLFHPDQMIAGKEDAANNYARGHYTVGKEYIDRTLD
HIRKLADQCTGLQGFLLFHSFGGGTGSGFSSLLLERLSIDFGKKAKLEFA
VYPAPQVSTAVVEPYNSVLTTHTTLEHSDCTFMVDNEAIYDICRKNLDVE
RPSYHNLNRMISQVVSSVTASLRFDGSLNVDLNEFQTNLVPYPRIHFPMA
TYAPLVSAEKAYHENHSVQEITNACFEPQNQLVKCDPRHGKYMSCCLLYR
GDVVPKDVNASISALKTKRTIQFVDWCPTGFKIGINYQPPTIVPGADMAK
VSRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE
AREDLAALEKDYEEVGMDSADCEDEEDEDY
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_045131XLOC_045131Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00072710TCONS_00072710Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002452Alpha_tubulin
IPR000217Tubulin
IPR018316Tubulin/FtsZ_2-layer-sand-dom
IPR003008Tubulin_FtsZ_GTPase
IPR017975Tubulin_CS
IPR008280Tub_FtsZ_C
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0005200structural constituent of cytoskeleton
GO:0003924GTPase activity
Vocabulary: Cellular Component
TermDefinition
GO:0005874microtubule
Vocabulary: Biological Process
TermDefinition
GO:0007017microtubule-based process
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007017 microtubule-based process
cellular_component GO:0005874 microtubule
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
molecular_function GO:0005200 structural constituent of cytoskeleton
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 448..468
NoneNo IPR availableGENE3D1.10.287.600coord: 414..465
e-value: 1.6E-31
score: 107.5
NoneNo IPR availableCDDcd02186alpha_tubulincoord: 35..465
e-value: 0.0
score: 866.467
IPR002452Alpha tubulinPRINTSPR01162ALPHATUBULINcoord: 415..431
score: 83.89
coord: 351..372
score: 75.4
coord: 304..319
score: 65.49
coord: 244..256
score: 64.96
coord: 150..158
score: 73.67
coord: 390..409
score: 73.36
coord: 178..190
score: 74.92
coord: 118..131
score: 78.03
coord: 51..66
score: 85.45
coord: 75..88
score: 74.37
coord: 191..202
score: 67.65
coord: 452..468
score: 88.33
coord: 377..390
score: 90.52
IPR000217TubulinPRINTSPR01161TUBULINcoord: 83..102
score: 66.46
coord: 138..162
score: 53.98
coord: 222..242
score: 59.54
coord: 43..63
score: 66.83
coord: 125..136
score: 65.77
coord: 164..182
score: 69.42
coord: 410..438
score: 57.47
coord: 208..221
score: 68.58
coord: 183..204
score: 41.23
IPR018316Tubulin/FtsZ, 2-layer sandwich domainSMARTSM00865Tubulin_C_4coord: 278..423
e-value: 1.1E-52
score: 191.0
IPR018316Tubulin/FtsZ, 2-layer sandwich domainGENE3D3.30.1330.20coord: 296..413
e-value: 2.6E-57
score: 191.6
IPR018316Tubulin/FtsZ, 2-layer sandwich domainPFAMPF03953Tubulin_Ccoord: 293..421
e-value: 1.6E-50
score: 170.4
IPR003008Tubulin/FtsZ, GTPase domainSMARTSM00864Tubulin_4coord: 79..276
e-value: 6.2E-75
score: 264.9
IPR003008Tubulin/FtsZ, GTPase domainPFAMPF00091Tubulincoord: 36..243
e-value: 5.8E-67
score: 225.6
IPR003008Tubulin/FtsZ, GTPase domainGENE3D3.40.50.1440coord: 32..295
e-value: 2.6E-124
score: 413.4
IPR003008Tubulin/FtsZ, GTPase domainSUPERFAMILY52490Tubulin nucleotide-binding domain-likecoord: 34..274
IPR017975Tubulin, conserved sitePROSITEPS00227TUBULINcoord: 172..178
IPR008280Tubulin/FtsZ, C-terminalSUPERFAMILY55307Tubulin C-terminal domain-likecoord: 276..467

Blast
BLAST of TCONS_00072710-protein vs. Swiss-Prot (Human)
Match: TBA1C (Tubulin alpha-1C chain OS=Homo sapiens GN=TUBA1C PE=1 SV=1)

HSP 1 Score: 796.964 bits (2057), Expect = 0.000e+0
Identity = 375/448 (83.71%), Postives = 418/448 (93.30%), Query Frame = 0
Query:   34 MRECISIHVGQAGCQIGNSCWELYCLEHGISPDGTATNEIT---GDESFSTFFSETGAGRHVPRAVFVDLEPSVIDEIRCSTYKSLFHPDQMIAGKEDAANNYARGHYTVGKEYIDRTLDHIRKLADQCTGLQGFLLFHSFGGGTGSGFSSLLLERLSIDFGKKAKLEFAVYPAPQVSTAVVEPYNSVLTTHTTLEHSDCTFMVDNEAIYDICRKNLDVERPSYHNLNRMISQVVSSVTASLRFDGSLNVDLNEFQTNLVPYPRIHFPMATYAPLVSAEKAYHENHSVQEITNACFEPQNQLVKCDPRHGKYMSCCLLYRGDVVPKDVNASISALKTKRTIQFVDWCPTGFKIGINYQPPTIVPGADMAKVSRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGMDSADCEDEEDE 478
            MRECISIHVGQAG QIGN+CWELYCLEHGI PDG   ++ T   GD+SF+TFFSETGAG+HVPRAVFVDLEP+VIDE+R  TY+ LFHP+Q+I GKEDAANNYARGHYT+GKE ID  LD IRKLADQCTGLQGFL+FHSFGGGTGSGF+SLL+ERLS+D+GKK+KLEF++YPAPQVSTAVVEPYNS+LTTHTTLEHSDC FMVDNEAIYDICR+NLD+ERP+Y NLNR+ISQ+VSS+TASLRFDG+LNVDL EFQTNLVPYPRIHFP+ATYAP++SAEKAYHE  +V EITNACFEP NQ+VKCDPRHGKYM+CCLLYRGDVVPKDVNA+I+ +KTKRTIQFVDWCPTGFK+GINYQPPT+VPG D+AKV RAVCMLSNTTA+AEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEARED+AALEKDYEEVG DSAD EDE +E
Sbjct:    1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAVAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGADSADGEDEGEE 448          
The following BLAST results are available for this feature:
BLAST of TCONS_00072710-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TBA1C0.000e+083.71Tubulin alpha-1C chain OS=Homo sapiens GN=TUBA1C P... [more]
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