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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072102 ID=TCONS_00072102|Name=TCONS_00072102|organism=Clytia hemisphaerica|type=transcript|length=1760bp TACAACTATTCTTCCTAAGACAAGTGACTTTCTTTATTCTTACTTTATTT TAGACATATGGTCGTAGAAAAATGGCGACTCCATTTGAACGTTATTGCTG CTTGTATCGTGAATACAGCGTGTACTCACAACTCACAATCCCCATCGTAA TGGACGTTTTACGTGAAAAATGTTACACACCACTCAACCAAATGAATCTT AATTTAACAGAAGGAAATGCAGAAATGAATCGACGTAAAAATGAATTCTT ATTATGGTTTTGGAGAAATACAACAATGTATCAATTTAAAGATTGTTCTT CGTCATCGAGTGCAAATAGTGATGCTACCAtcgttgaaaatttttgttca aaagatACGGAACCGACGTATAAAATCTACGTTGCATTCTGGGCACTCCT TCTTATCATGATTGTATTAAACAATCTCCTCATCATTGTTTCCGTACTTA AAGTTCCACATTTACGGAACAACGTGGCTAACCTGTTCATCATCTCTTTG TCATGCAGTGATCTGTTCGTTGGTCTTTTTGTCATCCCCATCAAAATTGG TATGTTTAGCAATAACATGGTGTTTTGTTATGGTATCAACATTTGTCGAG CAAACATGATGACCGATTCTTGGGCCTTTGTGACCACCATTGCTAATTTA GTTGCCATAGCAGTTGATCGCCACCTGGCTTTGAATCATCCTTACAAATA TCCAAACTGGGTGACGCGTCGACGTGCAAAGCTAGTGATTCTTGGTACAT GGGTTTATGGATTTTGTATAAGTTGCCTGATCAATGTTAAATTGGACAGT CCTTCCCAAGATGCAGTAGTTATAGAAGGATTAATGTGTCAAATGAATAG GAACTATATCTACTATGGTTTGCTGTATGGTCTTAATTTCTGTATTCCTG TCATTTGCATGGGAATCATATACTTCAGAATCCTCAGAATCACCAAGAAC CATGCTAGGAGTATCTCTGAATCAGTCATCCTTGATAACAATAGAGTCAT TTTGCAACAGATGAGCGAagatcaaaacaataataacaaTACAATGAATA ACGAGCCTGTTGTTTTGGAAATGACTGTTAAAAAGAACGGTGGAACGAAT TCGAACGAATCTCGAAGAGGGTCGTATACCGAACATTATACTATTGAAAA TAAACATTCAAACAATGATACCAAAACAACAACAGATTTTAAACAGACTT CACGTACACTACGTCGAAGCTCATCTAAAAGCATGGATCAATATCGCCGT ATTGTACGTAAAGCCGCTCAAACAGTCGCAGCCGTTTACGGTACTTATGT GATATGTTGGATTCCGATAGCCGTGTTTACCGTTGTTGTAATGTTTTGTA AGGATTCTAAAGATACCAGTTCTTGCACACACGTCCAGGACTGGCCTCAC CTCTATCTTGTTTTGATCCATTTCTTACCGTTGGTAAACTCTATGATGAA TGCATTTCTGTACGCAACTATGAACACTCAATTCCGTCGAGGTTTTAGAA AAGTTTTGGGTATCGATCAAATCAAATCTTGGCTGaaattaaaaatctta aaacaataatgatttttggatattttttcatTATAGGATAGAATAGGCTT TTTGTATATAGCTTgatgttttctattttttgcttgtgtatataactctt ttttttaatttgaaattttgtttgctttAAGTTTTGAAAGGTAGGAAAAA TGCTCTCAATAGCTTAGAATTAGAGGAAATCTTAAGGGATTTTTAAGTAT TCAGTTTTCT Run BLAST on NCBI protein sequence of TCONS_00072102-protein >TCONS_00072102-protein ID=TCONS_00072102-protein|Name=TCONS_00072102-protein|organism=Clytia hemisphaerica|type=polypeptide|length=495bp
MATPFERYCCLYREYSVYSQLTIPIVMDVLREKCYTPLNQMNLNLTEGNA EMNRRKNEFLLWFWRNTTMYQFKDCSSSSSANSDATIVENFCSKDTEPTY KIYVAFWALLLIMIVLNNLLIIVSVLKVPHLRNNVANLFIISLSCSDLFV GLFVIPIKIGMFSNNMVFCYGINICRANMMTDSWAFVTTIANLVAIAVDR HLALNHPYKYPNWVTRRRAKLVILGTWVYGFCISCLINVKLDSPSQDAVV IEGLMCQMNRNYIYYGLLYGLNFCIPVICMGIIYFRILRITKNHARSISE SVILDNNRVILQQMSEDQNNNNNTMNNEPVVLEMTVKKNGGTNSNESRRG SYTEHYTIENKHSNNDTKTTTDFKQTSRTLRRSSSKSMDQYRRIVRKAAQ TVAAVYGTYVICWIPIAVFTVVVMFCKDSKDTSSCTHVQDWPHLYLVLIH FLPLVNSMMNAFLYATMNTQFRRGFRKVLGIDQIKSWLKLKILKQ Run BLAST on NCBI transcript from alignment at scaffold_71:128876..130698+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072102 ID=TCONS_00072102|Name=TCONS_00072102|organism=Clytia hemisphaerica|type=transcript|length=1823bp|location=Sequence derived from alignment at scaffold_71:128876..130698+ (Clytia hemisphaerica) TACAACTATTCTTCCTAAGACAAGTGACTTTCTTTATTCTTACTTTATTT
TAGACATATGGTCGTAGAAAAATGGCGACTCCATTTGAACGTTATTGCTG
CTTGTATCGTGAATACAGCGTGTACTCACAACTCACAATCCCCATCGTAA
TGGACGTTTTACGTGAAAAATGTTACACACCACTCAACCAAATGAATCTT
AATTTAACAGAAGGAAATGCAGAAATGAATCGACGTAAAAATGAATTCTT
ATTATGGTTTTGGAGAAATACAACAATGTATCAATTTAAAGATTGTTCTT
CGTCATCGAGTGCAAATAGTGATGCTACCAtcgttgaaaatttttgttca
aaagatACGGAACCGACGTATAAAATCTACGTTGCATTCTGGGCACTCCT
TCTTATCATGATTGTATTAAACAATCTCCTCATCATTGTTTCCGTACTTA
AAGTTCCACATTTACGGAACAACGTGGCTAACCTGTTCATCATCTCTTTG
TCATGCAGTGATCTGTTCGTTGGTCTTTTTGTCATCCCCATCAAAATTGG
TATGTTTAGCAATAACATGGTGTTTTGTTATGGTATCAACATTTGTCGAG
CAAACATGATGACCGATTCTTGGGCCTTTGTGACCACCATTGCTAATTTA
GTTGCCATAGCAGTTGATCGCCACCTGGCTTTGAATCATCCTTACAAATA
TCCAAACTGGGTGACGCGTCGACGTGCAAAGCTAGTGATTCTTGGTACAT
GGGTTTATGGATTTTGTATAAGTTGCCTGATCAATGTTAAATTGGACAGT
CCTTCCCAAGATGCAGTAGTTATAGAAGGATTAATGTGTCAAATGAATAG
GAACTATATCTACTATGGTTTGCTGTATGGTCTTAATTTCTGTATTCCTG
TCATTTGCATGGGAATCATATACTTCAGAATCCTCAGAATCACCAAGAAC
CATGCTAGGAGTATCTCTGAATCAGTCATCCTTGATAACAATAGAGTCAT
TTTGCAACAGATGAGCGAagatcaaaacaataataacaaTACAATGAATA
ACGAGCCTGTTGTTTTGGAAATGACTGTTAAAAAGAACGGTGGAACGAAT
TCGAACGAATCTCGAAGAGGCTCGTATACTNAAATGACTGTTAAAAAGAA
CGGTGGAACGAATTCGAACGAATCTCGAAGAGGGTCGTATACCGAACATT
ATACTATTGAAAATAAACATTCAAACAATGATACCAAAACAACAACAGAT
TTTAAACAGACTTCACGTACACTACGTCGAAGCTCATCTAAAAGCATGGA
TCAATATCGCCGTATTGTACGTAAAGCCGCTCAAACAGTCGCAGCCGTTT
ACGGTACTTATGTGATATGTTGGATTCCGATAGCCGTGTTTACCGTTGTT
GTAATGTTTTGTAAGGATTCTAAAGATACCAGTTCTTGCACACACGTCCA
GGACTGGCCTCACCTCTATCTTGTTTTGATCCATTTCTTACCGTTGGTAA
ACTCTATGATGAATGCATTTCTGTACGCAACTATGAACACTCAATTCCGT
CGAGGTTTTAGAAAAGTTTTGGGTATCGATCAAATCAAATCTTGGCTGaa
attaaaaatcttaaaacaataatgatttttggatattttttcatTATAGG
ATAGAATAGGCTTTTTGTATATAGCTTgatgttttctattttttgcttgt
gtatataactcttttttttaatttgaaattttgtttgctttAAGTTTTGA
AAGGTAGGAAAAATGCTCTCAATAGCTTAGAATTAGAGGAAATCTTAAGG
GATTTTTAAGTATTCAGTTTTCT Coding sequence (CDS) from alignment at scaffold_71:128876..130698+ >TCONS_00072102 ID=TCONS_00072102|Name=TCONS_00072102|organism=Clytia hemisphaerica|type=CDS|length=2976bp|location=Sequence derived from alignment at scaffold_71:128876..130698+ (Clytia hemisphaerica) ATGGCGACTCCATTTGAACGTTATTGCTGCTTGTATCGTGAATACAGCGT GTACTCACAACTCACAATCCCCATCGTAATGGACGTTTTACGTGAAAAAT GTTACACACCACTCAACCAAATGAATCTTAATTTAACAGAAGGAAATGCA GAAATGAATCGACGTAAAAATGAATTCTTATTATGGTTTTGGAGAAATAC AACAATGTATCAATTTAAAGATTGTTCTTCGTCATCGAGTGCAAATAGTG ATGCTACCAtcgttgaaaatttttgttcaaaagatACGGAACCGACGTAT AAAATCTACGTTGCATTCTGGGCACTCCTTCTTATCATGATTGTATTAAA CAATCTCCTCATCATTGTTTCCGTACTTAAAGTTCCACATTTACGGAACA ACGTGGCTAACCTGTTCATCATCTCTTTGTCATGCAGTGATCTGTTCGTT GGTCTTTTTGTCATCCCCATCAAAATTGGTATGTTTAGCAATAACATGGT GTTTTGTTATGGTATCAACATTTGTCGAGCAAACATGATGACCGATTCTT GGGCCTTTGTGACCACCATTGCTAATTTAGTTGCCATAGCAGTTGATCGC CACCTGGCTTTGAATCATCCTTACAAATATCCAAACTGGGTGACGCGTCG ACGTGCAAAGCTAGTGATTCTTGGTACATGGGTTTATGGATTTTGTATAA GTTGCCTGATCAATGTTAAATTGGACAGTCCTTCCCAAGATGCAGTAGTT ATAGAAGGATTAATGTGTCAAATGAATAGGAACTATATCTACTATGGTTT GCTGTATGGTCTTAATTTCTGTATTCCTGTCATTTGCATGGGAATCATAT ACTTCAGAATCCTCAGAATCACCAAGAACCATGCTAGGAGTATCTCTGAA TCAGTCATCCTTGATAACAATAGAGTCATTTTGCAACAGATGAGCGAaga tcaaaacaataataacaaTACAATGAATAACGAGCCTGTTGTTTTGGAAA TGACTGTTAAAAAGAACGGTGGAACGAATTCGAACGAATCTCGAAGAGGG TCGTATACCGAACATTATACTATTGAAAATAAACATTCAAACAATGATAC CAAAACAACAACAGATTTTAAACAGACTTCACGTACACTACGTCGAAGCT CATCTAAAAGCATGGATCAATATCGCCGTATTGTACGTAAAGCCGCTCAA ACAGTCGCAGCCGTTTACGGTACTTATGTGATATGTTGGATTCCGATAGC CGTGTTTACCGTTGTTGTAATGTTTTGTAAGGATTCTAAAGATACCAGTT CTTGCACACACGTCCAGGACTGGCCTCACCTCTATCTTGTTTTGATCCAT TTCTTACCGTTGGTAAACTCTATGATGAATGCATTTCTGTACGCAACTAT GAACACTCAATTCCGTCGAGGTTTTAGAAAAGTTTTGGGTATCGATCAAA TCAAATCTTGGCTGaaattaaaaatcttaaaacaataaATGGCGACTCCA TTTGAACGTTATTGCTGCTTGTATCGTGAATACAGCGTGTACTCACAACT CACAATCCCCATCGTAATGGACGTTTTACGTGAAAAATGTTACACACCAC TCAACCAAATGAATCTTAATTTAACAGAAGGAAATGCAGAAATGAATCGA CGTAAAAATGAATTCTTATTATGGTTTTGGAGAAATACAACAATGTATCA ATTTAAAGATTGTTCTTCGTCATCGAGTGCAAATAGTGATGCTACCAtcg ttgaaaatttttgttcaaaagatACGGAACCGACGTATAAAATCTACGTT GCATTCTGGGCACTCCTTCTTATCATGATTGTATTAAACAATCTCCTCAT CATTGTTTCCGTACTTAAAGTTCCACATTTACGGAACAACGTGGCTAACC TGTTCATCATCTCTTTGTCATGCAGTGATCTGTTCGTTGGTCTTTTTGTC ATCCCCATCAAAATTGGTATGTTTAGCAATAACATGGTGTTTTGTTATGG TATCAACATTTGTCGAGCAAACATGATGACCGATTCTTGGGCCTTTGTGA CCACCATTGCTAATTTAGTTGCCATAGCAGTTGATCGCCACCTGGCTTTG AATCATCCTTACAAATATCCAAACTGGGTGACGCGTCGACGTGCAAAGCT AGTGATTCTTGGTACATGGGTTTATGGATTTTGTATAAGTTGCCTGATCA ATGTTAAATTGGACAGTCCTTCCCAAGATGCAGTAGTTATAGAAGGATTA ATGTGTCAAATGAATAGGAACTATATCTACTATGGTTTGCTGTATGGTCT TAATTTCTGTATTCCTGTCATTTGCATGGGAATCATATACTTCAGAATCC TCAGAATCACCAAGAACCATGCTAGGAGTATCTCTGAATCAGTCATCCTT GATAACAATAGAGTCATTTTGCAACAGATGAGCGAagatcaaaacaataa taacaaTACAATGAATAACGAGCCTGTTGTTTTGGAAATGACTGTTAAAA AGAACGGTGGAACGAATTCGAACGAATCTCGAAGAGGGTCGTATACCGAA CATTATACTATTGAAAATAAACATTCAAACAATGATACCAAAACAACAAC AGATTTTAAACAGACTTCACGTACACTACGTCGAAGCTCATCTAAAAGCA TGGATCAATATCGCCGTATTGTACGTAAAGCCGCTCAAACAGTCGCAGCC GTTTACGGTACTTATGTGATATGTTGGATTCCGATAGCCGTGTTTACCGT TGTTGTAATGTTTTGTAAGGATTCTAAAGATACCAGTTCTTGCACACACG TCCAGGACTGGCCTCACCTCTATCTTGTTTTGATCCATTTCTTACCGTTG GTAAACTCTATGATGAATGCATTTCTGTACGCAACTATGAACACTCAATT CCGTCGAGGTTTTAGAAAAGTTTTGGGTATCGATCAAATCAAATCTTGGC TGaaattaaaaatcttaaaacaataa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00072102-exon-scaffold_71-1491911889:128876..129994 | TCONS_00072102-exon-scaffold_71-1491911889:128876..129994 | Clytia hemisphaerica | exon |
TCONS_00072102-exon-scaffold_71-1510915933:128876..129994 | TCONS_00072102-exon-scaffold_71-1510915933:128876..129994 | Clytia hemisphaerica | exon |
TCONS_00072102-exon-scaffold_71-1575043694:128876..129994 | TCONS_00072102-exon-scaffold_71-1575043694:128876..129994 | Clytia hemisphaerica | exon |
TCONS_00072102-exon-scaffold_71-1491911889:130058..130698 | TCONS_00072102-exon-scaffold_71-1491911889:130058..130698 | Clytia hemisphaerica | exon |
TCONS_00072102-exon-scaffold_71-1510915933:130058..130698 | TCONS_00072102-exon-scaffold_71-1510915933:130058..130698 | Clytia hemisphaerica | exon |
TCONS_00072102-exon-scaffold_71-1575043694:130058..130698 | TCONS_00072102-exon-scaffold_71-1575043694:130058..130698 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_71 | supercontig | scaffold_71:128876..130698 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
Term | Definition |
GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
Term | Definition |
GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
Term | Definition |
GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
cellular_component |
GO:0016021 |
integral component of membrane |
molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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