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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072102 ID=TCONS_00072102|Name=TCONS_00072102|organism=Clytia hemisphaerica|type=transcript|length=1760bp
TACAACTATTCTTCCTAAGACAAGTGACTTTCTTTATTCTTACTTTATTT
TAGACATATGGTCGTAGAAAAATGGCGACTCCATTTGAACGTTATTGCTG
CTTGTATCGTGAATACAGCGTGTACTCACAACTCACAATCCCCATCGTAA
TGGACGTTTTACGTGAAAAATGTTACACACCACTCAACCAAATGAATCTT
AATTTAACAGAAGGAAATGCAGAAATGAATCGACGTAAAAATGAATTCTT
ATTATGGTTTTGGAGAAATACAACAATGTATCAATTTAAAGATTGTTCTT
CGTCATCGAGTGCAAATAGTGATGCTACCAtcgttgaaaatttttgttca
aaagatACGGAACCGACGTATAAAATCTACGTTGCATTCTGGGCACTCCT
TCTTATCATGATTGTATTAAACAATCTCCTCATCATTGTTTCCGTACTTA
AAGTTCCACATTTACGGAACAACGTGGCTAACCTGTTCATCATCTCTTTG
TCATGCAGTGATCTGTTCGTTGGTCTTTTTGTCATCCCCATCAAAATTGG
TATGTTTAGCAATAACATGGTGTTTTGTTATGGTATCAACATTTGTCGAG
CAAACATGATGACCGATTCTTGGGCCTTTGTGACCACCATTGCTAATTTA
GTTGCCATAGCAGTTGATCGCCACCTGGCTTTGAATCATCCTTACAAATA
TCCAAACTGGGTGACGCGTCGACGTGCAAAGCTAGTGATTCTTGGTACAT
GGGTTTATGGATTTTGTATAAGTTGCCTGATCAATGTTAAATTGGACAGT
CCTTCCCAAGATGCAGTAGTTATAGAAGGATTAATGTGTCAAATGAATAG
GAACTATATCTACTATGGTTTGCTGTATGGTCTTAATTTCTGTATTCCTG
TCATTTGCATGGGAATCATATACTTCAGAATCCTCAGAATCACCAAGAAC
CATGCTAGGAGTATCTCTGAATCAGTCATCCTTGATAACAATAGAGTCAT
TTTGCAACAGATGAGCGAagatcaaaacaataataacaaTACAATGAATA
ACGAGCCTGTTGTTTTGGAAATGACTGTTAAAAAGAACGGTGGAACGAAT
TCGAACGAATCTCGAAGAGGGTCGTATACCGAACATTATACTATTGAAAA
TAAACATTCAAACAATGATACCAAAACAACAACAGATTTTAAACAGACTT
CACGTACACTACGTCGAAGCTCATCTAAAAGCATGGATCAATATCGCCGT
ATTGTACGTAAAGCCGCTCAAACAGTCGCAGCCGTTTACGGTACTTATGT
GATATGTTGGATTCCGATAGCCGTGTTTACCGTTGTTGTAATGTTTTGTA
AGGATTCTAAAGATACCAGTTCTTGCACACACGTCCAGGACTGGCCTCAC
CTCTATCTTGTTTTGATCCATTTCTTACCGTTGGTAAACTCTATGATGAA
TGCATTTCTGTACGCAACTATGAACACTCAATTCCGTCGAGGTTTTAGAA
AAGTTTTGGGTATCGATCAAATCAAATCTTGGCTGaaattaaaaatctta
aaacaataatgatttttggatattttttcatTATAGGATAGAATAGGCTT
TTTGTATATAGCTTgatgttttctattttttgcttgtgtatataactctt
ttttttaatttgaaattttgtttgctttAAGTTTTGAAAGGTAGGAAAAA
TGCTCTCAATAGCTTAGAATTAGAGGAAATCTTAAGGGATTTTTAAGTAT
TCAGTTTTCT Run BLAST on NCBI protein sequence of TCONS_00072102-protein >TCONS_00072102-protein ID=TCONS_00072102-protein|Name=TCONS_00072102-protein|organism=Clytia hemisphaerica|type=polypeptide|length=495bp
MATPFERYCCLYREYSVYSQLTIPIVMDVLREKCYTPLNQMNLNLTEGNA
EMNRRKNEFLLWFWRNTTMYQFKDCSSSSSANSDATIVENFCSKDTEPTY
KIYVAFWALLLIMIVLNNLLIIVSVLKVPHLRNNVANLFIISLSCSDLFV
GLFVIPIKIGMFSNNMVFCYGINICRANMMTDSWAFVTTIANLVAIAVDR
HLALNHPYKYPNWVTRRRAKLVILGTWVYGFCISCLINVKLDSPSQDAVV
IEGLMCQMNRNYIYYGLLYGLNFCIPVICMGIIYFRILRITKNHARSISE
SVILDNNRVILQQMSEDQNNNNNTMNNEPVVLEMTVKKNGGTNSNESRRG
SYTEHYTIENKHSNNDTKTTTDFKQTSRTLRRSSSKSMDQYRRIVRKAAQ
TVAAVYGTYVICWIPIAVFTVVVMFCKDSKDTSSCTHVQDWPHLYLVLIH
FLPLVNSMMNAFLYATMNTQFRRGFRKVLGIDQIKSWLKLKILKQ Run BLAST on NCBI transcript from alignment at scaffold_71:128876..130698+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072102 ID=TCONS_00072102|Name=TCONS_00072102|organism=Clytia hemisphaerica|type=transcript|length=1823bp|location=Sequence derived from alignment at scaffold_71:128876..130698+ (Clytia hemisphaerica)
TACAACTATTCTTCCTAAGACAAGTGACTTTCTTTATTCTTACTTTATTT
TAGACATATGGTCGTAGAAAAATGGCGACTCCATTTGAACGTTATTGCTG
CTTGTATCGTGAATACAGCGTGTACTCACAACTCACAATCCCCATCGTAA
TGGACGTTTTACGTGAAAAATGTTACACACCACTCAACCAAATGAATCTT
AATTTAACAGAAGGAAATGCAGAAATGAATCGACGTAAAAATGAATTCTT
ATTATGGTTTTGGAGAAATACAACAATGTATCAATTTAAAGATTGTTCTT
CGTCATCGAGTGCAAATAGTGATGCTACCAtcgttgaaaatttttgttca
aaagatACGGAACCGACGTATAAAATCTACGTTGCATTCTGGGCACTCCT
TCTTATCATGATTGTATTAAACAATCTCCTCATCATTGTTTCCGTACTTA
AAGTTCCACATTTACGGAACAACGTGGCTAACCTGTTCATCATCTCTTTG
TCATGCAGTGATCTGTTCGTTGGTCTTTTTGTCATCCCCATCAAAATTGG
TATGTTTAGCAATAACATGGTGTTTTGTTATGGTATCAACATTTGTCGAG
CAAACATGATGACCGATTCTTGGGCCTTTGTGACCACCATTGCTAATTTA
GTTGCCATAGCAGTTGATCGCCACCTGGCTTTGAATCATCCTTACAAATA
TCCAAACTGGGTGACGCGTCGACGTGCAAAGCTAGTGATTCTTGGTACAT
GGGTTTATGGATTTTGTATAAGTTGCCTGATCAATGTTAAATTGGACAGT
CCTTCCCAAGATGCAGTAGTTATAGAAGGATTAATGTGTCAAATGAATAG
GAACTATATCTACTATGGTTTGCTGTATGGTCTTAATTTCTGTATTCCTG
TCATTTGCATGGGAATCATATACTTCAGAATCCTCAGAATCACCAAGAAC
CATGCTAGGAGTATCTCTGAATCAGTCATCCTTGATAACAATAGAGTCAT
TTTGCAACAGATGAGCGAagatcaaaacaataataacaaTACAATGAATA
ACGAGCCTGTTGTTTTGGAAATGACTGTTAAAAAGAACGGTGGAACGAAT
TCGAACGAATCTCGAAGAGGCTCGTATACTNAAATGACTGTTAAAAAGAA
CGGTGGAACGAATTCGAACGAATCTCGAAGAGGGTCGTATACCGAACATT
ATACTATTGAAAATAAACATTCAAACAATGATACCAAAACAACAACAGAT
TTTAAACAGACTTCACGTACACTACGTCGAAGCTCATCTAAAAGCATGGA
TCAATATCGCCGTATTGTACGTAAAGCCGCTCAAACAGTCGCAGCCGTTT
ACGGTACTTATGTGATATGTTGGATTCCGATAGCCGTGTTTACCGTTGTT
GTAATGTTTTGTAAGGATTCTAAAGATACCAGTTCTTGCACACACGTCCA
GGACTGGCCTCACCTCTATCTTGTTTTGATCCATTTCTTACCGTTGGTAA
ACTCTATGATGAATGCATTTCTGTACGCAACTATGAACACTCAATTCCGT
CGAGGTTTTAGAAAAGTTTTGGGTATCGATCAAATCAAATCTTGGCTGaa
attaaaaatcttaaaacaataatgatttttggatattttttcatTATAGG
ATAGAATAGGCTTTTTGTATATAGCTTgatgttttctattttttgcttgt
gtatataactcttttttttaatttgaaattttgtttgctttAAGTTTTGA
AAGGTAGGAAAAATGCTCTCAATAGCTTAGAATTAGAGGAAATCTTAAGG
GATTTTTAAGTATTCAGTTTTCT Coding sequence (CDS) from alignment at scaffold_71:128876..130698+ >TCONS_00072102 ID=TCONS_00072102|Name=TCONS_00072102|organism=Clytia hemisphaerica|type=CDS|length=2976bp|location=Sequence derived from alignment at scaffold_71:128876..130698+ (Clytia hemisphaerica)
ATGGCGACTCCATTTGAACGTTATTGCTGCTTGTATCGTGAATACAGCGT
GTACTCACAACTCACAATCCCCATCGTAATGGACGTTTTACGTGAAAAAT
GTTACACACCACTCAACCAAATGAATCTTAATTTAACAGAAGGAAATGCA
GAAATGAATCGACGTAAAAATGAATTCTTATTATGGTTTTGGAGAAATAC
AACAATGTATCAATTTAAAGATTGTTCTTCGTCATCGAGTGCAAATAGTG
ATGCTACCAtcgttgaaaatttttgttcaaaagatACGGAACCGACGTAT
AAAATCTACGTTGCATTCTGGGCACTCCTTCTTATCATGATTGTATTAAA
CAATCTCCTCATCATTGTTTCCGTACTTAAAGTTCCACATTTACGGAACA
ACGTGGCTAACCTGTTCATCATCTCTTTGTCATGCAGTGATCTGTTCGTT
GGTCTTTTTGTCATCCCCATCAAAATTGGTATGTTTAGCAATAACATGGT
GTTTTGTTATGGTATCAACATTTGTCGAGCAAACATGATGACCGATTCTT
GGGCCTTTGTGACCACCATTGCTAATTTAGTTGCCATAGCAGTTGATCGC
CACCTGGCTTTGAATCATCCTTACAAATATCCAAACTGGGTGACGCGTCG
ACGTGCAAAGCTAGTGATTCTTGGTACATGGGTTTATGGATTTTGTATAA
GTTGCCTGATCAATGTTAAATTGGACAGTCCTTCCCAAGATGCAGTAGTT
ATAGAAGGATTAATGTGTCAAATGAATAGGAACTATATCTACTATGGTTT
GCTGTATGGTCTTAATTTCTGTATTCCTGTCATTTGCATGGGAATCATAT
ACTTCAGAATCCTCAGAATCACCAAGAACCATGCTAGGAGTATCTCTGAA
TCAGTCATCCTTGATAACAATAGAGTCATTTTGCAACAGATGAGCGAaga
tcaaaacaataataacaaTACAATGAATAACGAGCCTGTTGTTTTGGAAA
TGACTGTTAAAAAGAACGGTGGAACGAATTCGAACGAATCTCGAAGAGGG
TCGTATACCGAACATTATACTATTGAAAATAAACATTCAAACAATGATAC
CAAAACAACAACAGATTTTAAACAGACTTCACGTACACTACGTCGAAGCT
CATCTAAAAGCATGGATCAATATCGCCGTATTGTACGTAAAGCCGCTCAA
ACAGTCGCAGCCGTTTACGGTACTTATGTGATATGTTGGATTCCGATAGC
CGTGTTTACCGTTGTTGTAATGTTTTGTAAGGATTCTAAAGATACCAGTT
CTTGCACACACGTCCAGGACTGGCCTCACCTCTATCTTGTTTTGATCCAT
TTCTTACCGTTGGTAAACTCTATGATGAATGCATTTCTGTACGCAACTAT
GAACACTCAATTCCGTCGAGGTTTTAGAAAAGTTTTGGGTATCGATCAAA
TCAAATCTTGGCTGaaattaaaaatcttaaaacaataaATGGCGACTCCA
TTTGAACGTTATTGCTGCTTGTATCGTGAATACAGCGTGTACTCACAACT
CACAATCCCCATCGTAATGGACGTTTTACGTGAAAAATGTTACACACCAC
TCAACCAAATGAATCTTAATTTAACAGAAGGAAATGCAGAAATGAATCGA
CGTAAAAATGAATTCTTATTATGGTTTTGGAGAAATACAACAATGTATCA
ATTTAAAGATTGTTCTTCGTCATCGAGTGCAAATAGTGATGCTACCAtcg
ttgaaaatttttgttcaaaagatACGGAACCGACGTATAAAATCTACGTT
GCATTCTGGGCACTCCTTCTTATCATGATTGTATTAAACAATCTCCTCAT
CATTGTTTCCGTACTTAAAGTTCCACATTTACGGAACAACGTGGCTAACC
TGTTCATCATCTCTTTGTCATGCAGTGATCTGTTCGTTGGTCTTTTTGTC
ATCCCCATCAAAATTGGTATGTTTAGCAATAACATGGTGTTTTGTTATGG
TATCAACATTTGTCGAGCAAACATGATGACCGATTCTTGGGCCTTTGTGA
CCACCATTGCTAATTTAGTTGCCATAGCAGTTGATCGCCACCTGGCTTTG
AATCATCCTTACAAATATCCAAACTGGGTGACGCGTCGACGTGCAAAGCT
AGTGATTCTTGGTACATGGGTTTATGGATTTTGTATAAGTTGCCTGATCA
ATGTTAAATTGGACAGTCCTTCCCAAGATGCAGTAGTTATAGAAGGATTA
ATGTGTCAAATGAATAGGAACTATATCTACTATGGTTTGCTGTATGGTCT
TAATTTCTGTATTCCTGTCATTTGCATGGGAATCATATACTTCAGAATCC
TCAGAATCACCAAGAACCATGCTAGGAGTATCTCTGAATCAGTCATCCTT
GATAACAATAGAGTCATTTTGCAACAGATGAGCGAagatcaaaacaataa
taacaaTACAATGAATAACGAGCCTGTTGTTTTGGAAATGACTGTTAAAA
AGAACGGTGGAACGAATTCGAACGAATCTCGAAGAGGGTCGTATACCGAA
CATTATACTATTGAAAATAAACATTCAAACAATGATACCAAAACAACAAC
AGATTTTAAACAGACTTCACGTACACTACGTCGAAGCTCATCTAAAAGCA
TGGATCAATATCGCCGTATTGTACGTAAAGCCGCTCAAACAGTCGCAGCC
GTTTACGGTACTTATGTGATATGTTGGATTCCGATAGCCGTGTTTACCGT
TGTTGTAATGTTTTGTAAGGATTCTAAAGATACCAGTTCTTGCACACACG
TCCAGGACTGGCCTCACCTCTATCTTGTTTTGATCCATTTCTTACCGTTG
GTAAACTCTATGATGAATGCATTTCTGTACGCAACTATGAACACTCAATT
CCGTCGAGGTTTTAGAAAAGTTTTGGGTATCGATCAAATCAAATCTTGGC
TGaaattaaaaatcttaaaacaataa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072102-exon-scaffold_71-1491911889:128876..129994 | TCONS_00072102-exon-scaffold_71-1491911889:128876..129994 | Clytia hemisphaerica | exon |
| TCONS_00072102-exon-scaffold_71-1510915933:128876..129994 | TCONS_00072102-exon-scaffold_71-1510915933:128876..129994 | Clytia hemisphaerica | exon |
| TCONS_00072102-exon-scaffold_71-1575043694:128876..129994 | TCONS_00072102-exon-scaffold_71-1575043694:128876..129994 | Clytia hemisphaerica | exon |
| TCONS_00072102-exon-scaffold_71-1491911889:130058..130698 | TCONS_00072102-exon-scaffold_71-1491911889:130058..130698 | Clytia hemisphaerica | exon |
| TCONS_00072102-exon-scaffold_71-1510915933:130058..130698 | TCONS_00072102-exon-scaffold_71-1510915933:130058..130698 | Clytia hemisphaerica | exon |
| TCONS_00072102-exon-scaffold_71-1575043694:130058..130698 | TCONS_00072102-exon-scaffold_71-1575043694:130058..130698 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_71 | supercontig | scaffold_71:128876..130698 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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