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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070803 ID=TCONS_00070803|Name=TCONS_00070803|organism=Clytia hemisphaerica|type=transcript|length=2190bpRun BLAST on NCBI protein sequence of TCONS_00070803-protein >TCONS_00070803-protein ID=TCONS_00070803-protein|Name=TCONS_00070803-protein|organism=Clytia hemisphaerica|type=polypeptide|length=623bp MLKFAVLAGLMTLTLAFDCGNEISIQKVGCFKRSQSVFPDMIANNRDSSHRun BLAST on NCBI transcript from alignment at scaffold_58:468936..475617+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00070803 ID=TCONS_00070803|Name=TCONS_00070803|organism=Clytia hemisphaerica|type=transcript|length=6682bp|location=Sequence derived from alignment at scaffold_58:468936..475617+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_58:468936..475617+ >TCONS_00070803 ID=TCONS_00070803|Name=TCONS_00070803|organism=Clytia hemisphaerica|type=CDS|length=18720bp|location=Sequence derived from alignment at scaffold_58:468936..475617+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00070803 vs. Swiss-Prot (Human)
Match: HMCN1 (Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2) HSP 1 Score: 241.891 bits (616), Expect = 3.592e-66 Identity = 127/287 (44.25%), Postives = 178/287 (62.02%), Query Frame = 2
Query: 599 KVDGGLSKWSEFTECSASCGEGAKFRERSCTNPLPQNGGASCEALGELSESQACKIKECPVNGQYGAWSAYSQCSKSCGGGNQKKTRKCDSPAPAHGGAECEGPAEDERPCNTQACPVNGQYGAWSAYSQCSKSCGGGNQKKTRKCDSPAPAHGGAECKGPAEDERPCNTQACPVNGKYGAWSAYSQCSKSCGGGNQKKTRKCDSPAPAHGGAACEGPAEDERACNTNGCPVNGKWXXXXXXXXXXXXXXXXXXXXXXXCNNPAPKNGGSQCSGSATQSATCNTQAC 1459
+V GG S+WS + CS +CG+G + R R C PLP NGG C+ G E + C+ K CPV+G + WS + +C++SCG GNQ +TR C++P+ HGG CEG A + CN + CPV+G + AW + CS+SCG G Q + R C++P PA GG+ C G + CN + CP++GK+ W+++S CS SCGGG +++TR C P P +GG CEG CN++ CP +G W + +G+CS+TC GG R R+C+NP P NGG C G +Q CNT C
Sbjct: 4527 QVHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQ--GSDLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMC 4811 HSP 2 Score: 241.121 bits (614), Expect = 5.820e-66 Identity = 128/286 (44.76%), Postives = 179/286 (62.59%), Query Frame = 2
Query: 602 VDGGLSKWSEFTECSASCGEGAKFRERSCTNPLPQNGGASCEALGELSESQACKIKECPVNGQYGAWSAYSQCSKSCGGGNQKKTRKCDSPAPAHGGAECEGPAEDERPCNTQACPVNGQYGAWSAYSQCSKSCGGGNQKKTRKCDSPAPAHGGAECKGPAEDERPCNTQACPVNGKYGAWSAYSQCSKSCGGGNQKKTRKCDSPAPAHGGAACEGPAEDERACNTNGCPVNGKWXXXXXXXXXXXXXXXXXXXXXXXCNNPAPKNGGSQCSGSATQSATCNTQAC 1459
VDG S+WS + EC+ SCG G + R R+C NP Q+GG CE G E C I+ CPV+G + AW + CS+SCG G Q + R C++P PA GG+ C+G + CN + CP++G++ W+++S CS SCGGG +++TR C P P +GG +C+G CN+ CP +G + WS + CS++C GG ++ R CD+P P++GG AC GP + CNT+ CPV+G WGS+ S+ CS +CGGG K+R R C++P P GG C G TQ CN QAC
Sbjct: 4585 VDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCE--GNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQAC 4868 HSP 3 Score: 211.075 bits (536), Expect = 2.899e-56 Identity = 97/230 (42.17%), Postives = 136/230 (59.13%), Query Frame = 2
Query: 602 VDGGLSKWSEFTECSASCGEGAKFRERSCTNPLPQNGGASCEALGELSESQACKIKECPVNGQYGAWSAYSQCSKSCGGGNQKKTRKCDSPAPAHGGAECEGPAEDERPCNTQACPVNGQYGAWSAYSQCSKSCGGGNQKKTRKCDSPAPAHGGAECKGPAEDERPCNTQACPVNGKYGAWSAYSQCSKSCGGGNQKKTRKCDSPAPAHGGAACEGPAEDERACNTNGCP 1291
V G S W + CS SCG+G + R R C NP P GG+ C+ G ++ Q C + CP++G++ W+++S CS SCGGG +++TR C P P +GG +CEG CN+ CP +G + WS + CS++C GG ++ R CD+P P++GG C GP + CNT CPV+G +G+W ++SQCS SCGGG + + R CD P P GG C G CN CP
Sbjct: 4642 VHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCD--GAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQACP 4869 The following BLAST results are available for this feature:
BLAST of TCONS_00070803 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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