XLOC_044052 (gene) - C. hemisphaerica

Overview
NameXLOC_044052
Unique NameXLOC_044052
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_58:468936..475617+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_044052 ID=XLOC_044052|Name=XLOC_044052|organism=Clytia hemisphaerica|type=gene|length=6682bp|location=Sequence derived from alignment at scaffold_58:468936..475617+ (Clytia hemisphaerica)
CAAGGATGAAATTTTCGACACACATAGAACATACTAAACAAAACAGGTGC
ATTGTGGATTCGGTATAAAACTCAACGTTCTTCCTTACGAATTCATTTTT
TAAGGAACAAGTCTTTTGGTTTGCaaggtaagctttctagaatcAGATTT
ATTTTCCCCAGTTACTTTTATACTTCCTTTTATATGTGAGGTAGCCCGAC
GTAGACCGTGTTAGGGTAGCAAGTGCTTAGGATTTTTTCCTTAATTTTTC
ATATCttagtttctttgtttttccatgaaggtaataaagaattaaaagat
gaagagaaaaagtctcggtaatgacctataTGGTCgttaaaatcttttat
aaatctattcgaagcggcttttctttgatgtaccatcattggaagcaaaa
aatccgaaatgtaaatttataagaacagaagagagaatgttatcctgatt
gaaataaacataTCAAACACAGGGCCGGCGAAACGGGGGGGGCGgccaat
tttgaaagtggaggggccaaatagtaagtgtctaaggaggcgccNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNgggggggggggggggccatgccccccccggccc
cccagtttcgccggccctgttttgatcaacaaagctattaaaaatccaac
atctttttattcagttttttatgaacttaaatattcccatgagTGCACAC
AAAATTTATCACTTTTTCCCATTGCAACCAAGGAGCCGTTTGCATCCGAT
GATTAGGTACAATGAAACAAAatgagttttcaaaatattaggACGTTCAC
TCTCTAAGTGGATTCAATGTTCTTTTATAGATTGTGGACTGAAGACTTCC
AAAAATGTTGAAGTTTGCTGTTCTTGCTGGTCTTATGACCCTCACTCTCG
CTTTTGGTAAGTGTTATTTTTCAATCTCGCACTTAGGCCCCTTTTACCAT
TTAATTGTGATACATTCTCCTTTTACGAGTGCTAAGAGCTTGGTTCTTAT
TGATATCTTAGTTAAGATTACCTACGAGCTCACAGAATTGGGAGCTCCCT
GTTAATTAAAGAGCTATAAAAACAAATGGTGGTGCAAAATAGTCTTTTTG
ATAGCTAAGAATGATTCTTTCTTCTCCTGATTTGGTTCTATTCCGATCTT
tgcctaccctgagtatcagaggttaagttttcaaagaaNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNgtcgtcatggttacttttgtcttcgctgattgcgcgatgaatag
aatctcgattcgtcggcacagcgtaaatatatgattttgagctgtgcttt
tcacggtaatctTTGCCATCAGTAAATTATGTCCCTGTGTTAGATTATCA
TCATATAGAGCGACTGTAAAAATCACAAATACCTCCTCTAAAAAATCACA
GGTAGTATGAAGAGAACAGAGGCTTCCAAAAGCCTAAGCGATTGTGTTCT
AAAATGCACATATCAACCCTTACACCAAAATGGGAATGGGATTGGCTTTC
CAAGGGCGGAATGGCGTTAATTGTTTGTATCCTTGAGATGTCAATGCTCG
GAACTATCGTTAGATTCGAACCCAATTCTCGGATTAACGCTCTACAATAT
TTATCTTGCAGATTGTGGTAACGAAAttagcattcaaaaagttgGATGTT
TCAAAAGAAGCCAATCAGTTTTCCCTGATATGATCGCCAACAACCGTGAC
TCATCACACGCTTCTTACATTGGTCAAGAAATCGATTGGAGCAACTTTgg
aaattctatgaaaaggttagAGTGTTTTTCAAAAAGGAAAACATAGTATA
AGTTTCTAAGGCTTGACATGATTTCACAATGCTTGGATCTCTCGAATATT
AACTTATTCTCTGAGACTGACATGGAAATACTACTGAAATataacatttt
cccaaaaaaaacatttttgcaataTATGATTAAATCCGTTATCCGTTTTA
ATTcttatgaaaatattaaaaatcatttgatttttagcatgatgaAATAC
GCAAGTGATTCGAGAAAAaactttactttattttttttccagccTTGCAT
GTCAATGCTCGCAAGCCGCTAAAGAAGGTGGTTATGTCGCCTTTGCTCTT
GGTTTCTATGGAGAATGTTTCGCTGGCAAAGACCAAAAAGCTTTGGATGA
CTTATTGATCGACCCAGCACAAAGCAGCAGTGCCTGTATTAACAAGAATT
ACGGTAAATGCCAAGTAGGAGAGAATTGCATCGGAGAAGCCAACGCTGAA
TACATTTATACCTTTGCTTCGCAAGCACCACCAAGTAAGTAgtaaaatca
aagaaatcttAAAATCTTGATGCAGATTTTTGATTTAGCATTCAACTGAT
GTAAAAATGTTATTGTACCTATGGTTGAATGGAATTGAGCAACTAACTTT
GCGATATTAGGCAAAATTATCTTATGGAATGTGTATTTTTGTCCCctgtt
ttaaaggttttgtttttacataagtgtccccgtttcatatcagacacata
tttcatatcaggacagtgtctccctattgttaaattgtgctgatataaac
aaaaaatgtttttcttttcctcctttctgaccaaattgctccacatccgt
gtcaattcaatgtaaaaaaagcttgtgacctaaaattgatgagtaagcaa
acaatatcactcttatttaaaaacaaaacctttaaagtggGTACATATCA
AAGGATGGGATTCATTCCTTTGCTTCTTTTGACAGAGGTTNGGGTACATA
TCAAAGGATGGGATTCATTTCTTTGCTTCTTTTGACAGAGGTTGATGGAG
GACTTTCTAAATGGTCAGAATTCACCGAATGCTCAGCTTCCTGTGGAGAA
GGAGCAAAATTCCGTGAACGTTCGTGTACCAACCCACTCCCTCAAAATGG
TGGTGCTAGCTGTGAAGCTCTCGGTGAATTGAGTGAATCACAAGCATGCA
AAATCAAGGAATGTCCAGGTAATTGCATCATTTGTCCAAAAAAATATTCC
CAAGATTTCCCAAGATTCAGCAATTTTAAGagttttgaattgaaataata
agattttttattttttgacgtgCTCTAAAATTAGTACTTTTAAGGGGATA
ATCagatgaaaaattaataatCAATTGTTTCAGCCGAGAAACCGAGAACC
TatcgaaatttgaatttcataATTGTCCAATGTCATACAGAAACCCGTCA
CTCACTTAGAAACGAAATTTTGACACAGTTATGTTAGATAAATTGCAACT
CTTCAAATAAGTTAcacagaaaaagtaacaaaaggAATGTTTGATACTTT
TCCTAGTCAATGGTCAATACGGAGCCTGGTCAGCATACAGTCAATGTAGC
AAGTCTTGTGGAGGtggaaatcaaaagaaaacaagaaaatgtGACAGCCC
AGCACCAGCCCATGGAGGAGCTGAATGCGAAGGACCAGCTGAAGATGAAA
GACCTTGCAACACTCAAGCTTGCCCAGGTTAGTTAGTTGCTCAGCTAGTA
AGCAGTCATTCACAGAATTTAGAGAGATACAGAATACTTACTGCAACTTT
TATAACTTTTATCTTCGTTAGATTCGATTCTCTTATCAAACTTAGTCTCA
TTCAAAAGCTAGCCCTTTACATAGAAAGACAATTCTACAGTTGATTCTCA
CTAATTCTGACTAGAAAGGGAAGTCTAACAAGTACGAAATACGGTGAGAT
TTGACACAATTACAGAAAGTATCTGAAAGTTTTACTATCGAAAAGATTGA
TGTGAAGAAGGCTATACCAGAAAGAATGCAGAATAGAAAAAATATAAGAT
TGGCTTTATTTGTTTTAGTCAATGGTCAATACGGAGCCTGGTCAGCATAC
AGTCAATGTAGCAAGTCTTGTGGAGGTggtaatcaaaagaaaacaagaaa
atgtGACAGCCCAGCACCAGCCCATGGAGGAGCTGAATGCAAAGGACCAG
CTGAAGACGAAAGACCTTGCAATACTCAAGCTTGCCCAGGTTAGTCAGCT
GCTCAGTTAAATGACAAGAACATTCTAAAGCCGTATAGCAAAGTAGCTGG
TGTCAATTCTTATCTCAATAATAATTATAATCTTCTAGAATACGTCCAAC
CCTGGTTGCAGGCTTGATTATAACCACATCATATAAAATGCAAGTAAAGC
ACATCAGTATTGCAGTTTACAAGTTAGAAATATCATGGGAGTCTTGCAAA
GCAAAGTCTCTTAATTCATGATAGTTTATAAGTGGCATTCTTTCAACGTT
CACCTAATATTAAAAAGGATGTAATGTTATTATATGGACGTCAGATAGAC
TTGAAACAAGTTCGTGTGTCTGACAGGCTTGGTGTGAAATATTTGATGAG
CAATAAAAGATTATAAcagaaaacataaaatatcgTTTGTCCATTTTAGT
CAATGGCAAATACGGAGCCTGGTCAGCATACAGTCAATGTAGCAAGTCTT
GTGGAGGTggtaatcaaaagaaaacaagaaaatgtGACAGCCCAGCACCA
GCCCATGGAGGAGCTGCCTGTGAAGGACCAGCTGAAGACGAAAGAGCTTG
CAACACTAATGGATGTCCAGGTAAAAAGAGTGATTAAGAAGTCTTTTTTA
TTCGAAAACATTTTAAACATGATAAAAGAGTATCTTTTTAAATAGACTTG
TTTCTCGACTCCAAAACTTCTTGATTACGCCTAATGCTCGACCACAAGAG
CCAGGGGGAGGTTTGCGTTATCTAACGTCAAAATGGTTTACCACCTTTCG
TACGACGTTATAGTTTATTTTAGACTATTCACTATGAAAGTCAAGTACAA
TAAACCTTTTTCCGTAGTTAACGGTAAATGGGGAAGTTATGGAAGCTACG
GTAGTTGCAGCAAAACATGTGGAGGAGGAAGCAAATCTCGATCACGATCA
TGCAACAACCCTGCACCAAAGAATGGAGGTAGTCAATGCAGTGGCTCTGC
TACACAATCTGCAACATGCAACACACAAGCTTGCTTGAGTAAGTGAAATT
AAATAAGTTCATTATCTCGTTGGTTTAGAAATTCTAAGATCTTACTTTAT
TTTTCCATTGGATACTGTTTGAACAGCTCTGAATCGAATCATACAGCCCT
GAACTTAGCGAGGGATTTAGGTATCTCAGACTCAACGTTTTAGAGCTTTA
ATTGACTAAAGTTAGCGTGTTTTGAACTCTTCCATGCTAATCTTAATCAA
GAAATCATTTTGTGTTACAGAGAGCAACTTATGTTCCTGGTATTACACTC
CATTCAACACTGAGAAGAAAGGAAGACCAGTCTACTTGGACAGACACTCA
CTCCACTGCCCATCCGGATACGTTATGAACTATATTAAATTACAACGAAA
CTCCGGACACACCCAAATACGTTACAAATACAAATGTTGCCGATCTCAAC
TCACTTGCTCAGACAGCCGACGAACAAACGGACAATCATACAATGGAGGT
GGTGAAGGAAATACTGTCTACTTGGACCGTCAAACTAACAACTGTTACAA
CAAaggtaaaattttctcaaaGCTCAAAATAAACATAACCCCTCAAAGTC
GATTCTTTGCCAATTTTTATATCGCAATAGCAACATCACCATGTTTCTAG
GACAGCTGGCCTCATTTTCAAACAACTACATCTATGCACGAGATAAAAAG
TAGATATTGCACTTGCTAACGatttccaaaagttttttttcataaatacC
CGTCCCAATCATGTTAACTTTTTAGAGGATTAAAAACTTTTAGCATCTTT
CAAATCTATTTCTTTTCTCACACGTCACTTTTACTTTCAGGTTTCAGTTA
CTTGAAATTAGACCGTAGCGGAACCAACTGGAACTACAAATATGATTGTT
GCAGCGTACCAAGTGGATCAGTCTCATGTTACGACACCAACACTGGATAC
AATGACGACGGTGACGGCAAAGTTGTCTATCTTGACAGACATACTATGTC
CTGTAACACTAACTATTACATCACATACTTCAAATTGGTTCGAAACTCTT
CACACAACAAATACAAATATGATTACCGATGCTGTAAACTTAACGCACCC
GCTGCCACTAACTAAACAGCAAGAACTTAAATGTAAATCTTATagtgtgt
caaaaatattttgaacgatattttttgatgtcaaaaatattttgaacgaT
ATTTTTTGAGTGAAAGAACAAATccatgaaaaagtaaaattttgtttctt
tttgtgAACGTCCCTTCGAGGTTGGATAAACG
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00070803TCONS_00070803Clytia hemisphaericatranscript
TCONS_00070804TCONS_00070804Clytia hemisphaericatranscript
TCONS_00070805TCONS_00070805Clytia hemisphaericatranscript
TCONS_00070806TCONS_00070806Clytia hemisphaericatranscript
TCONS_00070807TCONS_00070807Clytia hemisphaericatranscript
TCONS_00070808TCONS_00070808Clytia hemisphaericatranscript
TCONS_00070809TCONS_00070809Clytia hemisphaericatranscript
TCONS_00070810TCONS_00070810Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00070803-proteinTCONS_00070803-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_58supercontigscaffold_58:468936..475617 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
181.75	178.12	104.44	79.01	16.23	11.26	4.16	4.96	0.53	1.96	0.8	0.59	643.99	687.66	0.6	0.86	132.93	167.27	3215.79	3791.88	458.28	613.92	197.76	219.14	244.17	286.79	1.99	2.75	18.09	25.73