TCONS_00070810 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070810
Unique NameTCONS_00070810
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1948

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070810 ID=TCONS_00070810|Name=TCONS_00070810|organism=Clytia hemisphaerica|type=transcript|length=1948bp
agttttcaaaatattaggACGTTCACTCTCTAAGTGGATTCAATGTTCTT
TTATAGATTGTGGACTGAAGACTTCCAAAAATGTTGAAGTTTGCTGTTCT
TGCTGGTCTTATGACCCTCACTCTCGCTTTTGATTGTGGTAACGAAAtta
gcattcaaaaagttgGATGTTTCAAAAGAAGCCAATCAGTTTTCCCTGAT
ATGATCGCCAACAACCGTGACTCATCACACGCTTCTTACATTGGTCAAGA
AATCGATTGGAGCAACTTTggaaattctatgaaaagccTTGCATGTCAAT
GCTCGCAAGCCGCTAAAGAAGGTGGTTATGTCGCCTTTGCTCTTGGTTTC
TATGGAGAATGTTTCGCTGGCAAAGACCAAAAAGCTTTGGATGACTTATT
GATCGACCCAGCACAAAGCAGCAGTGCCTGTATTAACAAGAATTACGGTA
AATGCCAAGTAGGAGAGAATTGCATCGGAGAAGCCAACGCTGAATACATT
TATACCTTTGCTTCGCAAGCACCACCAAAGGTTGATGGAGGACTTTCTAA
ATGGTCAGAATTCACCGAATGCTCAGCTTCCTGTGGAGAAGGAGCAAAAT
TCCGTGAACGTTCGTGTACCAACCCACTCCCTCAAAATGGTGGTGCTAGC
TGTGAAGCTCTCGGTGAATTGAGTGAATCACAAGCATGCAAAATCAAGGA
ATGTCCAGTCAATGGTCAATACGGAGCCTGGTCAGCATACAGTCAATGTA
GCAAGTCTTGTGGAGGtggaaatcaaaagaaaacaagaaaatgtGACAGC
CCAGCACCAGCCCATGGAGGAGCTGAATGCGAAGGACCAGCTGAAGATGA
AAGACCTTGCAACACTCAAGCTTGCCCAGTCAATGGTCAATACGGAGCCT
GGTCAGCATACAGTCAATGTAGCAAGTCTTGTGGAGGTggtaatcaaaag
aaaacaagaaaatgtGACAGCCCAGCACCAGCCCATGGAGGAGCTGCCTG
TGAAGGACCAGCTGAAGACGAAAGAGCTTGCAACACTAATGGATGTCCAG
TTAACGGTAAATGGGGAAGTTATGGAAGCTACGGTAGTTGCAGCAAAACA
TGTGGAGGAGGAAGCAAATCTCGATCACGATCATGCAACAACCCTGCACC
AAAGAATGGAGGTAGTCAATGCAGTGGCTCTGCTACACAATCTGCAACAT
GCAACACACAAGCTTGCTTGAAGAGCAACTTATGTTCCTGGTATTACACT
CCATTCAACACTGAGAAGAAAGGAAGACCAGTCTACTTGGACAGACACTC
ACTCCACTGCCCATCCGGATACGTTATGAACTATATTAAATTACAACGAA
ACTCCGGACACACCCAAATACGTTACAAATACAAATGTTGCCGATCTCAA
CTCACTTGCTCAGACAGCCGACGAACAAACGGACAATCATACAATGGAGG
TGGTGAAGGAAATACTGTCTACTTGGACCGTCAAACTAACAACTGTTACA
ACAAagGTTTCAGTTACTTGAAATTAGACCGTAGCGGAACCAACTGGAAC
TACAAATATGATTGTTGCAGCGTACCAAGTGGATCAGTCTCATGTTACGA
CACCAACACTGGATACAATGACGACGGTGACGGCAAAGTTGTCTATCTTG
ACAGACATACTATGTCCTGTAACACTAACTATTACATCACATACTTCAAA
TTGGTTCGAAACTCTTCACACAACAAATACAAATATGATTACCGATGCTG
TAAACTTAACGCACCCGCTGCCACTAACTAAACAGCAAGAACTTAAATGT
AAATCTTATagtgtgtcaaaaatattttgaacgatattttttgatgtcaa
aaatattttgaacgaTATTTTTTGAGTGAAAGAACAAATccatgaaaaag
taaaattttgtttctttttgtgAACGTCCCTTCGAGGTTGGATAAACG
Run BLAST on NCBI

transcript from alignment at scaffold_58:469810..475617+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070810 ID=TCONS_00070810|Name=TCONS_00070810|organism=Clytia hemisphaerica|type=transcript|length=5808bp|location=Sequence derived from alignment at scaffold_58:469810..475617+ (Clytia hemisphaerica)
agttttcaaaatattaggACGTTCACTCTCTAAGTGGATTCAATGTTCTT TTATAGATTGTGGACTGAAGACTTCCAAAAATGTTGAAGTTTGCTGTTCT TGCTGGTCTTATGACCCTCACTCTCGCTTTTGGTAAGTGTTATTTTTCAA TCTCGCACTTAGGCCCCTTTTACCATTTAATTGTGATACATTCTCCTTTT ACGAGTGCTAAGAGCTTGGTTCTTATTGATATCTTAGTTAAGATTACCTA CGAGCTCACAGAATTGGGAGCTCCCTGTTAATTAAAGAGCTATAAAAACA AATGGTGGTGCAAAATAGTCTTTTTGATAGCTAAGAATGATTCTTTCTTC TCCTGATTTGGTTCTATTCCGATCTTtgcctaccctgagtatcagaggtt aagttttcaaagaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgtcgtcatggttactttt gtcttcgctgattgcgcgatgaatagaatctcgattcgtcggcacagcgt aaatatatgattttgagctgtgcttttcacggtaatctTTGCCATCAGTA AATTATGTCCCTGTGTTAGATTATCATCATATAGAGCGACTGTAAAAATC ACAAATACCTCCTCTAAAAAATCACAGGTAGTATGAAGAGAACAGAGGCT TCCAAAAGCCTAAGCGATTGTGTTCTAAAATGCACATATCAACCCTTACA CCAAAATGGGAATGGGATTGGCTTTCCAAGGGCGGAATGGCGTTAATTGT TTGTATCCTTGAGATGTCAATGCTCGGAACTATCGTTAGATTCGAACCCA ATTCTCGGATTAACGCTCTACAATATTTATCTTGCAGATTGTGGTAACGA AAttagcattcaaaaagttgGATGTTTCAAAAGAAGCCAATCAGTTTTCC CTGATATGATCGCCAACAACCGTGACTCATCACACGCTTCTTACATTGGT CAAGAAATCGATTGGAGCAACTTTggaaattctatgaaaaggttagAGTG TTTTTCAAAAAGGAAAACATAGTATAAGTTTCTAAGGCTTGACATGATTT CACAATGCTTGGATCTCTCGAATATTAACTTATTCTCTGAGACTGACATG GAAATACTACTGAAATataacattttcccaaaaaaaacatttttgcaata TATGATTAAATCCGTTATCCGTTTTAATTcttatgaaaatattaaaaatc atttgatttttagcatgatgaAATACGCAAGTGATTCGAGAAAAaacttt actttattttttttccagccTTGCATGTCAATGCTCGCAAGCCGCTAAAG AAGGTGGTTATGTCGCCTTTGCTCTTGGTTTCTATGGAGAATGTTTCGCT GGCAAAGACCAAAAAGCTTTGGATGACTTATTGATCGACCCAGCACAAAG CAGCAGTGCCTGTATTAACAAGAATTACGGTAAATGCCAAGTAGGAGAGA ATTGCATCGGAGAAGCCAACGCTGAATACATTTATACCTTTGCTTCGCAA GCACCACCAAGTAAGTAgtaaaatcaaagaaatcttAAAATCTTGATGCA GATTTTTGATTTAGCATTCAACTGATGTAAAAATGTTATTGTACCTATGG TTGAATGGAATTGAGCAACTAACTTTGCGATATTAGGCAAAATTATCTTA TGGAATGTGTATTTTTGTCCCctgttttaaaggttttgtttttacataag tgtccccgtttcatatcagacacatatttcatatcaggacagtgtctccc tattgttaaattgtgctgatataaacaaaaaatgtttttcttttcctcct ttctgaccaaattgctccacatccgtgtcaattcaatgtaaaaaaagctt gtgacctaaaattgatgagtaagcaaacaatatcactcttatttaaaaac aaaacctttaaagtggGTACATATCAAAGGATGGGATTCATTCCTTTGCT TCTTTTGACAGAGGTTNGGGTACATATCAAAGGATGGGATTCATTTCTTT GCTTCTTTTGACAGAGGTTGATGGAGGACTTTCTAAATGGTCAGAATTCA CCGAATGCTCAGCTTCCTGTGGAGAAGGAGCAAAATTCCGTGAACGTTCG TGTACCAACCCACTCCCTCAAAATGGTGGTGCTAGCTGTGAAGCTCTCGG TGAATTGAGTGAATCACAAGCATGCAAAATCAAGGAATGTCCAGGTAATT GCATCATTTGTCCAAAAAAATATTCCCAAGATTTCCCAAGATTCAGCAAT TTTAAGagttttgaattgaaataataagattttttattttttgacgtgCT CTAAAATTAGTACTTTTAAGGGGATAATCagatgaaaaattaataatCAA TTGTTTCAGCCGAGAAACCGAGAACCTatcgaaatttgaatttcataATT GTCCAATGTCATACAGAAACCCGTCACTCACTTAGAAACGAAATTTTGAC ACAGTTATGTTAGATAAATTGCAACTCTTCAAATAAGTTAcacagaaaaa gtaacaaaaggAATGTTTGATACTTTTCCTAGTCAATGGTCAATACGGAG CCTGGTCAGCATACAGTCAATGTAGCAAGTCTTGTGGAGGtggaaatcaa aagaaaacaagaaaatgtGACAGCCCAGCACCAGCCCATGGAGGAGCTGA ATGCGAAGGACCAGCTGAAGATGAAAGACCTTGCAACACTCAAGCTTGCC CAGGTTAGTTAGTTGCTCAGCTAGTAAGCAGTCATTCACAGAATTTAGAG AGATACAGAATACTTACTGCAACTTTTATAACTTTTATCTTCGTTAGATT CGATTCTCTTATCAAACTTAGTCTCATTCAAAAGCTAGCCCTTTACATAG AAAGACAATTCTACAGTTGATTCTCACTAATTCTGACTAGAAAGGGAAGT CTAACAAGTACGAAATACGGTGAGATTTGACACAATTACAGAAAGTATCT GAAAGTTTTACTATCGAAAAGATTGATGTGAAGAAGGCTATACCAGAAAG AATGCAGAATAGAAAAAATATAAGATTGGCTTTATTTGTTTTAGTCAATG GTCAATACGGAGCCTGGTCAGCATACAGTCAATGTAGCAAGTCTTGTGGA GGTggtaatcaaaagaaaacaagaaaatgtGACAGCCCAGCACCAGCCCA TGGAGGAGCTGAATGCAAAGGACCAGCTGAAGACGAAAGACCTTGCAATA CTCAAGCTTGCCCAGGTTAGTCAGCTGCTCAGTTAAATGACAAGAACATT CTAAAGCCGTATAGCAAAGTAGCTGGTGTCAATTCTTATCTCAATAATAA TTATAATCTTCTAGAATACGTCCAACCCTGGTTGCAGGCTTGATTATAAC CACATCATATAAAATGCAAGTAAAGCACATCAGTATTGCAGTTTACAAGT TAGAAATATCATGGGAGTCTTGCAAAGCAAAGTCTCTTAATTCATGATAG TTTATAAGTGGCATTCTTTCAACGTTCACCTAATATTAAAAAGGATGTAA TGTTATTATATGGACGTCAGATAGACTTGAAACAAGTTCGTGTGTCTGAC AGGCTTGGTGTGAAATATTTGATGAGCAATAAAAGATTATAAcagaaaac ataaaatatcgTTTGTCCATTTTAGTCAATGGCAAATACGGAGCCTGGTC AGCATACAGTCAATGTAGCAAGTCTTGTGGAGGTggtaatcaaaagaaaa caagaaaatgtGACAGCCCAGCACCAGCCCATGGAGGAGCTGCCTGTGAA GGACCAGCTGAAGACGAAAGAGCTTGCAACACTAATGGATGTCCAGGTAA AAAGAGTGATTAAGAAGTCTTTTTTATTCGAAAACATTTTAAACATGATA AAAGAGTATCTTTTTAAATAGACTTGTTTCTCGACTCCAAAACTTCTTGA TTACGCCTAATGCTCGACCACAAGAGCCAGGGGGAGGTTTGCGTTATCTA ACGTCAAAATGGTTTACCACCTTTCGTACGACGTTATAGTTTATTTTAGA CTATTCACTATGAAAGTCAAGTACAATAAACCTTTTTCCGTAGTTAACGG TAAATGGGGAAGTTATGGAAGCTACGGTAGTTGCAGCAAAACATGTGGAG GAGGAAGCAAATCTCGATCACGATCATGCAACAACCCTGCACCAAAGAAT GGAGGTAGTCAATGCAGTGGCTCTGCTACACAATCTGCAACATGCAACAC ACAAGCTTGCTTGAGTAAGTGAAATTAAATAAGTTCATTATCTCGTTGGT TTAGAAATTCTAAGATCTTACTTTATTTTTCCATTGGATACTGTTTGAAC AGCTCTGAATCGAATCATACAGCCCTGAACTTAGCGAGGGATTTAGGTAT CTCAGACTCAACGTTTTAGAGCTTTAATTGACTAAAGTTAGCGTGTTTTG AACTCTTCCATGCTAATCTTAATCAAGAAATCATTTTGTGTTACAGAGAG CAACTTATGTTCCTGGTATTACACTCCATTCAACACTGAGAAGAAAGGAA GACCAGTCTACTTGGACAGACACTCACTCCACTGCCCATCCGGATACGTT ATGAACTATATTAAATTACAACGAAACTCCGGACACACCCAAATACGTTA CAAATACAAATGTTGCCGATCTCAACTCACTTGCTCAGACAGCCGACGAA CAAACGGACAATCATACAATGGAGGTGGTGAAGGAAATACTGTCTACTTG GACCGTCAAACTAACAACTGTTACAACAAaggtaaaattttctcaaaGCT CAAAATAAACATAACCCCTCAAAGTCGATTCTTTGCCAATTTTTATATCG CAATAGCAACATCACCATGTTTCTAGGACAGCTGGCCTCATTTTCAAACA ACTACATCTATGCACGAGATAAAAAGTAGATATTGCACTTGCTAACGatt tccaaaagttttttttcataaatacCCGTCCCAATCATGTTAACTTTTTA GAGGATTAAAAACTTTTAGCATCTTTCAAATCTATTTCTTTTCTCACACG TCACTTTTACTTTCAGGTTTCAGTTACTTGAAATTAGACCGTAGCGGAAC CAACTGGAACTACAAATATGATTGTTGCAGCGTACCAAGTGGATCAGTCT CATGTTACGACACCAACACTGGATACAATGACGACGGTGACGGCAAAGTT GTCTATCTTGACAGACATACTATGTCCTGTAACACTAACTATTACATCAC ATACTTCAAATTGGTTCGAAACTCTTCACACAACAAATACAAATATGATT ACCGATGCTGTAAACTTAACGCACCCGCTGCCACTAACTAAACAGCAAGA ACTTAAATGTAAATCTTATagtgtgtcaaaaatattttgaacgatatttt ttgatgtcaaaaatattttgaacgaTATTTTTTGAGTGAAAGAACAAATc catgaaaaagtaaaattttgtttctttttgtgAACGTCCCTTCGAGGTTG GATAAACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044052XLOC_044052Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070810-exon-scaffold_58-1491911889:469810..469941TCONS_00070810-exon-scaffold_58-1491911889:469810..469941Clytia hemisphaericaexon
TCONS_00070810-exon-scaffold_58-1510915933:469810..469941TCONS_00070810-exon-scaffold_58-1510915933:469810..469941Clytia hemisphaericaexon
TCONS_00070810-exon-scaffold_58-1575043694:469810..469941TCONS_00070810-exon-scaffold_58-1575043694:469810..469941Clytia hemisphaericaexon
TCONS_00070810-exon-scaffold_58-1491911889:470997..471150TCONS_00070810-exon-scaffold_58-1491911889:470997..471150Clytia hemisphaericaexon
TCONS_00070810-exon-scaffold_58-1510915933:470997..471150TCONS_00070810-exon-scaffold_58-1510915933:470997..471150Clytia hemisphaericaexon
TCONS_00070810-exon-scaffold_58-1575043694:470997..471150TCONS_00070810-exon-scaffold_58-1575043694:470997..471150Clytia hemisphaericaexon
TCONS_00070810-exon-scaffold_58-1491911889:471428..471669TCONS_00070810-exon-scaffold_58-1491911889:471428..471669Clytia hemisphaericaexon
TCONS_00070810-exon-scaffold_58-1510915933:471428..471669TCONS_00070810-exon-scaffold_58-1510915933:471428..471669Clytia hemisphaericaexon
TCONS_00070810-exon-scaffold_58-1575043694:471428..471669TCONS_00070810-exon-scaffold_58-1575043694:471428..471669Clytia hemisphaericaexon
TCONS_00070810-exon-scaffold_58-1491911889:472174..472353TCONS_00070810-exon-scaffold_58-1491911889:472174..472353Clytia hemisphaericaexon
TCONS_00070810-exon-scaffold_58-1510915933:472174..472353TCONS_00070810-exon-scaffold_58-1510915933:472174..472353Clytia hemisphaericaexon
TCONS_00070810-exon-scaffold_58-1575043694:472174..472353TCONS_00070810-exon-scaffold_58-1575043694:472174..472353Clytia hemisphaericaexon
TCONS_00070810-exon-scaffold_58-1491911889:472692..472862TCONS_00070810-exon-scaffold_58-1491911889:472692..472862Clytia hemisphaericaexon
TCONS_00070810-exon-scaffold_58-1510915933:472692..472862TCONS_00070810-exon-scaffold_58-1510915933:472692..472862Clytia hemisphaericaexon
TCONS_00070810-exon-scaffold_58-1575043694:472692..472862TCONS_00070810-exon-scaffold_58-1575043694:472692..472862Clytia hemisphaericaexon
TCONS_00070810-exon-scaffold_58-1491911889:473204..473260TCONS_00070810-exon-scaffold_58-1491911889:473204..473260Clytia hemisphaericaexon
TCONS_00070810-exon-scaffold_58-1510915933:473204..473260TCONS_00070810-exon-scaffold_58-1510915933:473204..473260Clytia hemisphaericaexon
TCONS_00070810-exon-scaffold_58-1575043694:473204..473260TCONS_00070810-exon-scaffold_58-1575043694:473204..473260Clytia hemisphaericaexon
TCONS_00070810-exon-scaffold_58-1491911889:473842..473955TCONS_00070810-exon-scaffold_58-1491911889:473842..473955Clytia hemisphaericaexon
TCONS_00070810-exon-scaffold_58-1510915933:473842..473955TCONS_00070810-exon-scaffold_58-1510915933:473842..473955Clytia hemisphaericaexon
TCONS_00070810-exon-scaffold_58-1575043694:473842..473955TCONS_00070810-exon-scaffold_58-1575043694:473842..473955Clytia hemisphaericaexon
TCONS_00070810-exon-scaffold_58-1491911889:474203..474373TCONS_00070810-exon-scaffold_58-1491911889:474203..474373Clytia hemisphaericaexon
TCONS_00070810-exon-scaffold_58-1510915933:474203..474373TCONS_00070810-exon-scaffold_58-1510915933:474203..474373Clytia hemisphaericaexon
TCONS_00070810-exon-scaffold_58-1575043694:474203..474373TCONS_00070810-exon-scaffold_58-1575043694:474203..474373Clytia hemisphaericaexon
TCONS_00070810-exon-scaffold_58-1491911889:474606..474890TCONS_00070810-exon-scaffold_58-1491911889:474606..474890Clytia hemisphaericaexon
TCONS_00070810-exon-scaffold_58-1510915933:474606..474890TCONS_00070810-exon-scaffold_58-1510915933:474606..474890Clytia hemisphaericaexon
TCONS_00070810-exon-scaffold_58-1575043694:474606..474890TCONS_00070810-exon-scaffold_58-1575043694:474606..474890Clytia hemisphaericaexon
TCONS_00070810-exon-scaffold_58-1491911889:475176..475617TCONS_00070810-exon-scaffold_58-1491911889:475176..475617Clytia hemisphaericaexon
TCONS_00070810-exon-scaffold_58-1510915933:475176..475617TCONS_00070810-exon-scaffold_58-1510915933:475176..475617Clytia hemisphaericaexon
TCONS_00070810-exon-scaffold_58-1575043694:475176..475617TCONS_00070810-exon-scaffold_58-1575043694:475176..475617Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_58supercontigscaffold_58:469810..475617 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
81.3267 79.2654 40.7411 30.5908 4.46917 5.4265 1.22341 0.998829 1.41848e-05 1.73247 0.630591 0.414526 243.633 287.469 0.0279405 3.20138e-05 67.4559 60.0297 1543.06 1740.07 153.266 225.911 90.5402 105.734 75.6111 78.896 1.70691 1.32898 9.65072 6.90808
Blast
BLAST of TCONS_00070810 vs. Swiss-Prot (Human)
Match: HMCN1 (Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2)

HSP 1 Score: 192.971 bits (489), Expect = 9.072e-51
Identity = 102/230 (44.35%), Postives = 148/230 (64.35%), Query Frame = 3
Query:  528 KVDGGLSKWSEFTECSASCGEGAKFRERSCTNPLPQNGGASCEALGELSESQACKIKECPVNGQYGAWSAYSQCSKSCGGGNQKKTRKCDSPAPAHGGAECEGPAEDERPCNTQACPVNGQYGAWSAYSQCSKSCGGGNQKKTRKCDSPAPAHGGAACEGPAEDERACNTNGCPVNGKWXXXXXXXXXXXXXXXXXXXXXXXCNNPAPKNGGSQCSGSATQSATCNTQAC 1217
            +V GG S+WS +  CS +CG+G + R R C  PLP NGG  C+  G   E + C+ K CPV+G +  WS + +C++SCG GNQ +TR C++P+  HGG  CEG A +   CN + CPV+G + AW  +  CS+SCG G Q + R C++P PA GG+ C+G     + CN   CP++GKW ++ S+ +CS +CGGG++ R+R C++P P+ GG +C GS  QS  CN+  C
Sbjct: 4527 QVHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQ--GSDLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPC 4754          

HSP 2 Score: 185.652 bits (470), Expect = 1.830e-48
Identity = 101/229 (44.10%), Postives = 140/229 (61.14%), Query Frame = 3
Query:  531 VDGGLSKWSEFTECSASCGEGAKFRERSCTNPLPQNGGASCEALGELSESQACKIKECPVNGQYGAWSAYSQCSKSCGGGNQKKTRKCDSPAPAHGGAECEGPAEDERPCNTQACPVNGQYGAWSAYSQCSKSCGGGNQKKTRKCDSPAPAHGGAACEGPAEDERACNTNGCPVNGKWXXXXXXXXXXXXXXXXXXXXXXXCNNPAPKNGGSQCSGSATQSATCNTQAC 1217
            VDG  S+WS + EC+ SCG G + R R+C NP  Q+GG  CE  G   E   C I+ CPV+G + AW  +  CS+SCG G Q + R C++P PA GG+ C+G     + CN + CP++G++  W+++S CS SCGGG +++TR C  P P +GG  CEG       CN++ CP +G W  +  +G+CS+TC GG   R R+C+NP P NGG  C G  +Q   CNT  C
Sbjct: 4585 VDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCE--GNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMC 4811          

HSP 3 Score: 184.496 bits (467), Expect = 3.797e-48
Identity = 101/229 (44.10%), Postives = 141/229 (61.57%), Query Frame = 3
Query:  531 VDGGLSKWSEFTECSASCGEGAKFRERSCTNPLPQNGGASCEALGELSESQACKIKECPVNGQYGAWSAYSQCSKSCGGGNQKKTRKCDSPAPAHGGAECEGPAEDERPCNTQACPVNGQYGAWSAYSQCSKSCGGGNQKKTRKCDSPAPAHGGAACEGPAEDERACNTNGCPVNGKWXXXXXXXXXXXXXXXXXXXXXXXCNNPAPKNGGSQCSGSATQSATCNTQAC 1217
            V G  S W  +  CS SCG+G + R R C NP P  GG+ C+  G  ++ Q C  + CP++G++  W+++S CS SCGGG +++TR C  P P +GG +CEG       CN+  CP +G +  WS +  CS++C GG  ++ R CD+P P++GG AC GP    + CNT+ CPV+G WGS+ S+  CS +CGGG K+R R C++P P  GG  C G  TQ   CN QAC
Sbjct: 4642 VHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCD--GAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQAC 4868          

HSP 4 Score: 160.229 bits (404), Expect = 1.494e-40
Identity = 73/173 (42.20%), Postives = 101/173 (58.38%), Query Frame = 3
Query:  531 VDGGLSKWSEFTECSASCGEGAKFRERSCTNPLPQNGGASCEALGELSESQACKIKECPVNGQYGAWSAYSQCSKSCGGGNQKKTRKCDSPAPAHGGAECEGPAEDERPCNTQACPVNGQYGAWSAYSQCSKSCGGGNQKKTRKCDSPAPAHGGAACEGPAEDERACNTNGCP 1049
            + G  + W+ ++ CS SCG GA+ R R C++P+PQ GG  CE  G   +S  C    CP +G +  WS +  CS++C GG  ++ R CD+P P++GG  C GP    + CNT  CPV+G +G+W ++SQCS SCGGG + + R CD P P  GG  C G       CN   CP
Sbjct: 4699 IHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCE--GSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQACP 4869          

HSP 5 Score: 102.834 bits (255), Expect = 2.490e-22
Identity = 54/124 (43.55%), Postives = 67/124 (54.03%), Query Frame = 3
Query:  507 FASQAPPKVDGGLSKWSEFTECSASCGEGAKFRERSCTNPLPQNGGASCEALGELSESQACKIKECPVNGQYGAWSAYSQCSKSCGGGNQKKTRKCDSPAPAHGGAECEGPAEDERPCNTQACP 878
            F +  P    G  S WS +  CS +C  G   R R+C NP P NGG +C   G  S+ Q C    CPV+G +G+W ++SQCS SCGGG + + R CD P P  GG  C G       CN QACP
Sbjct: 4748 FCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACG--GPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQACP 4869          
The following BLAST results are available for this feature:
BLAST of TCONS_00070810 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HMCN19.072e-5144.35Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2[more]
back to top