TCONS_00070803-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00070803-protein
Unique Name	TCONS_00070803-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	623

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00070803-protein ID=TCONS_00070803-protein|Name=TCONS_00070803-protein|organism=Clytia hemisphaerica|type=polypeptide|length=623bp
MLKFAVLAGLMTLTLAFDCGNEISIQKVGCFKRSQSVFPDMIANNRDSSH
ASYIGQEIDWSNFGNSMKSLACQCSQAAKEGGYVAFALGFYGECFAGKDQ
KALDDLLIDPAQSSSACINKNYGKCQVGENCIGEANAEYIYTFASQAPPK
VDGGLSKWSEFTECSASCGEGAKFRERSCTNPLPQNGGASCEALGELSES
QACKIKECPVNGQYGAWSAYSQCSKSCGGGNQKKTRKCDSPAPAHGGAEC
EGPAEDERPCNTQACPVNGQYGAWSAYSQCSKSCGGGNQKKTRKCDSPAP
AHGGAECKGPAEDERPCNTQACPVNGKYGAWSAYSQCSKSCGGGNQKKTR
KCDSPAPAHGGAACEGPAEDERACNTNGCPVNGKWGSYGSYGSCSKTCGG
GSKSRSRSCNNPAPKNGGSQCSGSATQSATCNTQACLKSNLCSWYYTPFN
TEKKGRPVYLDRHSLHCPSGYVMNYIKLQRNSGHTQIRYKYKCCRSQLTC
SDSRRTNGQSYNGGGEGNTVYLDRQTNNCYNKGFSYLKLDRSGTNWNYKY
DCCSVPSGSVSCYDTNTGYNDDGDGKVVYLDRHTMSCNTNYYITYFKLVR
NSSHNKYKYDYRCCKLNAPAATN

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_044052	XLOC_044052	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00070803	TCONS_00070803	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000884	TSP1_rpt

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000884	Thrombospondin type-1 (TSP1) repeat	SMART	SM00209	TSP1_2	coord: 328..380 e-value: 4.8E-12 score: 56.0 coord: 271..323 e-value: 2.8E-13 score: 60.1 coord: 385..437 e-value: 1.5E-12 score: 57.7 coord: 214..266 e-value: 2.2E-13 score: 60.5 coord: 155..209 e-value: 1.6E-14 score: 64.2
IPR000884	Thrombospondin type-1 (TSP1) repeat	GENE3D	2.20.100.10		coord: 151..208 e-value: 6.0E-15 score: 54.8 coord: 210..265 e-value: 1.8E-16 score: 59.7 coord: 267..322 e-value: 3.0E-16 score: 58.9 coord: 381..436 e-value: 7.7E-15 score: 54.4 coord: 324..379 e-value: 1.4E-15 score: 56.8
IPR000884	Thrombospondin type-1 (TSP1) repeat	PFAM	PF00090	TSP_1	coord: 156..208 e-value: 3.1E-10 score: 40.0 coord: 330..379 e-value: 3.1E-10 score: 40.0 coord: 390..436 e-value: 1.9E-9 score: 37.5 coord: 216..265 e-value: 3.1E-10 score: 40.0 coord: 273..322 e-value: 2.4E-10 score: 40.3
IPR000884	Thrombospondin type-1 (TSP1) repeat	PROSITE	PS50092	TSP1	coord: 268..323 score: 13.326
IPR000884	Thrombospondin type-1 (TSP1) repeat	PROSITE	PS50092	TSP1	coord: 382..437 score: 13.231
IPR000884	Thrombospondin type-1 (TSP1) repeat	PROSITE	PS50092	TSP1	coord: 325..380 score: 12.797
IPR000884	Thrombospondin type-1 (TSP1) repeat	PROSITE	PS50092	TSP1	coord: 152..209 score: 12.107
IPR000884	Thrombospondin type-1 (TSP1) repeat	PROSITE	PS50092	TSP1	coord: 211..266 score: 13.439
IPR000884	Thrombospondin type-1 (TSP1) repeat	SUPERFAMILY	82895	TSP-1 type 1 repeat	coord: 208..265
IPR000884	Thrombospondin type-1 (TSP1) repeat	SUPERFAMILY	82895	TSP-1 type 1 repeat	coord: 379..436
IPR000884	Thrombospondin type-1 (TSP1) repeat	SUPERFAMILY	82895	TSP-1 type 1 repeat	coord: 265..322
IPR000884	Thrombospondin type-1 (TSP1) repeat	SUPERFAMILY	82895	TSP-1 type 1 repeat	coord: 150..208
IPR000884	Thrombospondin type-1 (TSP1) repeat	SUPERFAMILY	82895	TSP-1 type 1 repeat	coord: 322..379

Blast

[Close]

BLAST of TCONS_00070803-protein vs. Swiss-Prot (Human)
Match: HMCN1 (Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2)

HSP 1 Score: 280.026 bits (715), Expect = 4.265e-81
Identity = 128/286 (44.76%), Postives = 179/286 (62.59%), Query Frame = 0

Query:  151 VDGGLSKWSEFTECSASCGEGAKFRERSCTNPLPQNGGASCEALGELSESQACKIKECPVNGQYGAWSAYSQCSKSCGGGNQKKTRKCDSPAPAHGGAECEGPAEDERPCNTQACPVNGQYGAWSAYSQCSKSCGGGNQKKTRKCDSPAPAHGGAECKGPAEDERPCNTQACPVNGKYGAWSAYSQCSKSCGGGNQKKTRKCDSPAPAHGGAACEGPAEDERACNTNGCPVNGKWGSYGSYGSCSKTCGGGSKSRSRSCNNPAPKNGGSQCSGSATQSATCNTQAC 436
            VDG  S+WS + EC+ SCG G + R R+C NP  Q+GG  CE  G   E   C I+ CPV+G + AW  +  CS+SCG G Q + R C++P PA GG+ C+G     + CN + CP++G++  W+++S CS SCGGG +++TR C  P P +GG +C+G       CN+  CP +G +  WS +  CS++C GG  ++ R CD+P P++GG AC GP    + CNT+ CPV+G WGS+ S+  CS +CGGG K+R R C++P P  GG  C G  TQ   CN QAC
Sbjct: 4585 VDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCE--GNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQAC 4868

HSP 2 Score: 276.944 bits (707), Expect = 4.723e-80
Identity = 127/287 (44.25%), Postives = 178/287 (62.02%), Query Frame = 0

Query:  150 KVDGGLSKWSEFTECSASCGEGAKFRERSCTNPLPQNGGASCEALGELSESQACKIKECPVNGQYGAWSAYSQCSKSCGGGNQKKTRKCDSPAPAHGGAECEGPAEDERPCNTQACPVNGQYGAWSAYSQCSKSCGGGNQKKTRKCDSPAPAHGGAECKGPAEDERPCNTQACPVNGKYGAWSAYSQCSKSCGGGNQKKTRKCDSPAPAHGGAACEGPAEDERACNTNGCPVNGKWGSYGSYGSCSKTCGGGSKSRSRSCNNPAPKNGGSQCSGSATQSATCNTQAC 436
            +V GG S+WS +  CS +CG+G + R R C  PLP NGG  C+  G   E + C+ K CPV+G +  WS + +C++SCG GNQ +TR C++P+  HGG  CEG A +   CN + CPV+G + AW  +  CS+SCG G Q + R C++P PA GG+ C G     + CN + CP++GK+  W+++S CS SCGGG +++TR C  P P +GG  CEG       CN++ CP +G W  +  +G+CS+TC GG   R R+C+NP P NGG  C G  +Q   CNT  C
Sbjct: 4527 QVHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQ--GSDLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMC 4811

HSP 3 Score: 212.231 bits (539), Expect = 3.377e-58
Identity = 97/230 (42.17%), Postives = 136/230 (59.13%), Query Frame = 0

Query:  151 VDGGLSKWSEFTECSASCGEGAKFRERSCTNPLPQNGGASCEALGELSESQACKIKECPVNGQYGAWSAYSQCSKSCGGGNQKKTRKCDSPAPAHGGAECEGPAEDERPCNTQACPVNGQYGAWSAYSQCSKSCGGGNQKKTRKCDSPAPAHGGAECKGPAEDERPCNTQACPVNGKYGAWSAYSQCSKSCGGGNQKKTRKCDSPAPAHGGAACEGPAEDERACNTNGCP 380
            V G  S W  +  CS SCG+G + R R C NP P  GG+ C+  G  ++ Q C  + CP++G++  W+++S CS SCGGG +++TR C  P P +GG +CEG       CN+  CP +G +  WS +  CS++C GG  ++ R CD+P P++GG  C GP    + CNT  CPV+G +G+W ++SQCS SCGGG + + R CD P P  GG  C G       CN   CP
Sbjct: 4642 VHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCD--GAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQACP 4869

The following BLAST results are available for this feature:

BLAST of TCONS_00070803-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00070803-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
HMCN1	4.265e-81	44.76	Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2	[more]

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TCONS_00070803-protein (polypeptide) - C. hemisphaerica