TCONS_00070200 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070200
Unique NameTCONS_00070200
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1793

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070200 ID=TCONS_00070200|Name=TCONS_00070200|organism=Clytia hemisphaerica|type=transcript|length=1793bp
AACGTGGAGTCGATATAAATGCTAAATCCtttgtaaaatgtgacaaaaat
attgacttaTAGCATCATTACAACTTGCtatataatttaaaaataatgat
gaagatcaattattttgaaatatcacGAATCCCTACAGTTGAcgcaaaaa
aagttttagcAACCATTGAAGATGATGAACGAAATCCTAACCGTAAAAGA
AGGAGACTTGACAACCTGAATGTAGAAGAAAGAATACTCAGGAGGAAATT
GAAAAACAGAGTTGCTGCCCAAAGTGCACGAGACCGAAAGAAAGCACACA
TGGACCAACTTGAAATTACACTTATGCGAGTTGAAAAAGagaacaaattt
ttgaagaaaagcaATGAGGAATTAAGATCACAAGTTCATCAATTAATGGA
AAATAATGCACAGCTCAGATCAAAGCTTGGCTTAACCCCACCTGCTTCAC
CATCTCAAGATTATACCTGTGTTATTGTCcccaaacaaaaagaaaatatc
attaCACCTTCAGTGTGTGACCATGACCACATTGtgatcaaaaaagaaga
aatgtcACCGGAGCATGCATTGCTTTTTGGGCTTTCCCTGCTGTGGAATA
TCCTGATGACGACTCTTGTTTTGATGATCACGGCGTGCAAgatgagtccc
agGCTGAATTATTTCTCGATATTGTTGGTGATAACGAACCAGTCAAGATG
GAAGAATCCAAAATCAGTGAGGCCCCAAATCCCACCAGATATACAATTAT
CGAAAACAAGCCAATTAGCCATTGTCCAACAATTAGAGGACAAAACGATA
ACAACAACGAAATCAAATGTGAAGAATTCGATGTTGATGAGTTTTTGTCA
AATGAGACTAATGACTTTGCTTGCCCGTCAAGCCCTGACTCTGAGCCAGT
ATCACCATCTGATTCAACAATCGTTGAGATCGATAGTAGTTTCCAGATGC
ACAACGCCACGGCTGAAAGTAGCGTGGTGGGCAAACCAGCCGATGATGGA
TACGGGATGATACAAGGTGGCTCTTTTATTGATGATGAGTTTTTGTTGTC
CTCGTGCGCCACCAATGATGAGTTAAATGATGAATGCAATATTACTGATG
TAGATGATCCTTTTTCTGAGTTATTTCCAACGTTGCTGAGTGTTTGAGTT
ATTGTCTGACCTCGATAGTGTTTAGTTCTTATTGCAGTTTTCTTGATCTT
CCTGGGACTAAATTCTATTGATTCATTTTGTATGTATCATAGTGAATTAA
TTTTATCTTAGCTTTACATATtaaatttatttgaatttgaaatccatcca
tttattttttatatccgAAAAGTCTGTTATTTATGAACAGcaagttttag
atttttatcTCTTTCCTCTTTTCTCTGACTggcgtttttatttttaattt
ataagttttttttactattttggaaatattttcctACCTTGTGTTGCTTA
AAAATCTCATGAAACAACGTCAGAATTATTATCATTTATTAGGAGTAATA
TTattattttgtatatatttaaCTTCATTGAAACAAAAGGGcataaatac
aacaaaaaaatgttcaaaactgaaaaaaacccACTCTCCATCTCTTTTGC
TGTTAGTCAACAATTCATCTTGATTAATTCCATGAGGGATGTAAAGTGAT
TCATTGAGTAAGACCCCCTACGTACATTAGATTTAAACTTGGGATGAATA
GAACTTTTAATACTCTGATGGAAAAGATTCTATAGGACAACTGGTTTAAA
TGATTATATgaaaaaagtaataagaaaTGCACATCTCCCTTTT
Run BLAST on NCBI

transcript from alignment at scaffold_516:108022..111162+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070200 ID=TCONS_00070200|Name=TCONS_00070200|organism=Clytia hemisphaerica|type=transcript|length=3141bp|location=Sequence derived from alignment at scaffold_516:108022..111162+ (Clytia hemisphaerica)
AACGTGGAGTCGATATAAATGCTAAATCCtttgtaaaatggtaaaatata CTTTAGTTCGGATTTTAAAATGTATTGATGATTATCTTCTCAAATTGATT TGGTTTATTAGTGTATTCATAGTAGTATAAAATAAGATAACTGTCTGTTG AGGTAAACTTATAtgtttgattttacttgctTTGTTGTTGTGCgtgaaaa gaaaaatggaatGTCATTATTTTCCCACGATGTATCTAATGTAATTTATA TTTCATTTtagtgacaaaaatattgacttaTAGCATCATTACAACTTGCt atataatttaaaaataatgatgaagatcaattattttgaaatatcacGAA TCCCTACAGTTGAcgcaaaaaaagttttagcAACCATTGAAGATGATGAA CGAAATCCTAACCGTAAAAGAAGGAGACTTGACAACCTGAATGTAGAAGA AAGAATACTCAGGAGGTAATTTCTTTACACTTCAGTTGGTTGTATCTTTC ATTGAGAACGGTCTGCTTAACCAATCTTCCAGGATGGTAAGGAAAACTAG TGAGATAAAAATTACAATATCTTTGTTTTTGGAGAAACANTGGATGGTAA GAAAAACTAGTGAgataaaaattacaatataaTATCTTTGTTTTTGGAGA AACAAGTTATTTGAAAATGGTTTATTTTTAGAGAATTTGTGTAATGCCGA CATACCTGGTCTGCAAAGTAGGTAGAGTGATTTATTTAACCTTACTTTTT ACCTTTACTTTATATTTCAATTTCAGGAAATTGAAAAACAGAGTTGCTGC CCAAAGTGCACGAGACCGAAAGAAAGCACACATGGACCAACTTGAAATTA CACTTATGCGAGTTGAAAAAGaggtttgattttgaagaccttaaaagtta tttttccaGAAAACTTATTTTATTCATATTATGCATTAATCTAGGTACtg acaatttcaaaaatttactttttaaatGGTTCTTTTTAACATTATTTTAC TTACTTGTGCAATTTCAGTCTAATCATATTTTTCCTTGTTTCTAATTATT AGaacaaatttttgaagaaaagcaATGAGGAATTAAGATCACAAGTTCAT CAATTAATGGAAAATAATGCACAGCTCAGATCAAAGCTTGGCTTAACCCC ACCTGCTTCACCATCTCAAGATTATACCTGTGTTATTGTCcccaaacaaa aagaaaatatcattaCACCTTCAGTGTGTGACCATGACCACATTGtgatc aaaaaagaagaaatgtcACCGGAGCATGCATTGCTTTTTGGGCTTTCCCT GCTGTGGAATATCCTGATGACGACTCTTGTTTTGATGATCACGGCGTGCA AgatgagtcccaggtagggtttTTGGATAAAGGTTTTATACTTAAGGGGG TTAATTTTTAATTCTTCgtgtgatttttgaaatatgcagTGTCACTTTAA TTGACTGATGCTTTTAAGCTTTTTTGAGCACTGGTACCAGAATTGTGTTG AAAGTGAGCAATAAACCTTTtgtttgaattgttttgttttctcaaCTGAT CATAATGTTCAATATGTGCAGCTGTCTCAATATCTCCTTTCATCAGATTG AAATTAGAGTAGAATTGAATTTCATTGAACAGCTGCCCTTACttctaaaa taaaagtaaataaaaagttcaattttaaaaagcttttccCTCTTTTTATT TGCATGTGTTTGCAAATTtcctttaaatttaaaaatcaNATTTAAAAAGC AAagattaaagaaattttttactTGCTTTTCCCTCTTTTTATTTGCATGT GTTTGTAAATTtcctttaaatttaaaaatcaacAATTGATTGAACTAGTT CTCTATAGAATTTTCTAGGGTGAAATCCCCTTTGTAAGCACCATGTTTaa tctgtttttcattttccccagGCTGAATTATTTCTCGATATTGTTGGTGA TAACGAACCAGTCAAGATGGAAGAATCCAAAATCAGTGAGGCCTCAAATC CCACCAGATATACAATTATCGAAAACAAGCCAATTAGCCATTGTCCAACA ATTAGAGGANATCAGTGAGGCCCCAAATCCCACCAGATATACAATTATCG AAAACAAGCCAATTAGCCATTGTCCAACAATTAGAGGACAAAACGATAAC AACAACGAAATCAAATGTGAAGAATTCGATGTTGATGAGTTTTTGTCAAA TGAGACTAATGACTTTGCTTGCCCGTCAAGCCCTGACTCTGAGCCAGTAT CACCATCTGATTCAACAATCGTTGAGATCGATAGTAGTTTCCAGATGCAC AACGCCACGGCTGAAAGTAGCGTGGTGGGCAAACCAGCCGATGATGGATA CGGGATGATACAAGGTGGCTCTTTTATTGATGATGAGTTTTTGTTGTCCT CGTGCGCCACCAATGATGAGTTAAATGATGAATGCAATATTACTGATGTA GATGATCCTTTTTCTGAGTTATTTCCAACGTTGCTGAGTGTTTGAGTTAT TGTCTGACCTCGATAGTGTTTAGTTCTTATTGCAGTTTTCTTGATCTTCC TGGGACTAAATTCTATTGATTCATTTTGTATGTATCATAGTGAATTAATT TTATCTTAGCTTTACATATtaaatttatttgaatttgaaatccatccatt tattttttatatccgAAAAGTCTGTTATTTATGAACAGcaagttttagat ttttatcTCTTTCCTCTTTTCTCTGACTggcgtttttatttttaatttat aagttttttttactattttggaaatattttcctACCTTGTGTTGCTTAAA AATCTCATGAAACAACGTCAGAATTATTATCATTTATTAGGAGTAATATT attattttgtatatatttaaCTTCATTGAAACAAAAGGGcataaatacaa caaaaaaatgttcaaaactgaaaaaaacccACTCTCCATCTCTTTTGCTG TTAGTCAACAATTCATCTTGATTAATTCCATGAGGGATGTAAAGTGATTC ATTGAGTAAGACCCCCTACGTACATTAGATTTAAACTTGGGATGAATAGA ACTTTTAATACTCTGATGGAAAAGATTCTATAGGACAACTGGTTTAAATG ATTATATgaaaaaagtaataagaaaTGCACATCTCCCTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043724XLOC_043724Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070200-exon-scaffold_516-1491911889:108022..108061TCONS_00070200-exon-scaffold_516-1491911889:108022..108061Clytia hemisphaericaexon
TCONS_00070200-exon-scaffold_516-1510915933:108022..108061TCONS_00070200-exon-scaffold_516-1510915933:108022..108061Clytia hemisphaericaexon
TCONS_00070200-exon-scaffold_516-1575043694:108022..108061TCONS_00070200-exon-scaffold_516-1575043694:108022..108061Clytia hemisphaericaexon
TCONS_00070200-exon-scaffold_516-1491911889:108283..108486TCONS_00070200-exon-scaffold_516-1491911889:108283..108486Clytia hemisphaericaexon
TCONS_00070200-exon-scaffold_516-1510915933:108283..108486TCONS_00070200-exon-scaffold_516-1510915933:108283..108486Clytia hemisphaericaexon
TCONS_00070200-exon-scaffold_516-1575043694:108283..108486TCONS_00070200-exon-scaffold_516-1575043694:108283..108486Clytia hemisphaericaexon
TCONS_00070200-exon-scaffold_516-1491911889:108798..108894TCONS_00070200-exon-scaffold_516-1491911889:108798..108894Clytia hemisphaericaexon
TCONS_00070200-exon-scaffold_516-1510915933:108798..108894TCONS_00070200-exon-scaffold_516-1510915933:108798..108894Clytia hemisphaericaexon
TCONS_00070200-exon-scaffold_516-1575043694:108798..108894TCONS_00070200-exon-scaffold_516-1575043694:108798..108894Clytia hemisphaericaexon
TCONS_00070200-exon-scaffold_516-1491911889:109074..109384TCONS_00070200-exon-scaffold_516-1491911889:109074..109384Clytia hemisphaericaexon
TCONS_00070200-exon-scaffold_516-1510915933:109074..109384TCONS_00070200-exon-scaffold_516-1510915933:109074..109384Clytia hemisphaericaexon
TCONS_00070200-exon-scaffold_516-1575043694:109074..109384TCONS_00070200-exon-scaffold_516-1575043694:109074..109384Clytia hemisphaericaexon
TCONS_00070200-exon-scaffold_516-1491911889:109943..110011TCONS_00070200-exon-scaffold_516-1491911889:109943..110011Clytia hemisphaericaexon
TCONS_00070200-exon-scaffold_516-1510915933:109943..110011TCONS_00070200-exon-scaffold_516-1510915933:109943..110011Clytia hemisphaericaexon
TCONS_00070200-exon-scaffold_516-1575043694:109943..110011TCONS_00070200-exon-scaffold_516-1575043694:109943..110011Clytia hemisphaericaexon
TCONS_00070200-exon-scaffold_516-1491911889:110091..111162TCONS_00070200-exon-scaffold_516-1491911889:110091..111162Clytia hemisphaericaexon
TCONS_00070200-exon-scaffold_516-1510915933:110091..111162TCONS_00070200-exon-scaffold_516-1510915933:110091..111162Clytia hemisphaericaexon
TCONS_00070200-exon-scaffold_516-1575043694:110091..111162TCONS_00070200-exon-scaffold_516-1575043694:110091..111162Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_516supercontigscaffold_516:108022..111162 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.35525 12.9136 2.36295 5.61946 205.236 158.837 226.669 238.201 23.1929 13.029 23.4693 26.6073 38.2726 38.4442 31.7056 46.6756 9.2154 17.3658 45.6981 18.2032 44.5758 41.4445 33.5889 45.8195 47.4494 81.3012 57.8302 62.2608 30.1609 35.8976
Blast
BLAST of TCONS_00070200 vs. Swiss-Prot (Human)
Match: XBP1 (X-box-binding protein 1 OS=Homo sapiens GN=XBP1 PE=1 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 5.552e-18
Identity = 44/81 (54.32%), Postives = 61/81 (75.31%), Query Frame = 3
Query:  192 RKRRRLDNLNVEERILRRKLKNRVAAQSARDRKKAHMDQLEITLMRVEKENKFLKKSNEELRSQVHQLMENNAQLRSKLGL 434
            RKR+RL +L+ EE+ LRRKLKNRVAAQ+ARDRKKA M +LE  ++ +E+EN+ L   N+ LR + H L+  N +LR +LG+
Sbjct:   59 RKRQRLTHLSPEEKALRRKLKNRVAAQTARDRKKARMSELEQQVVDLEEENQKLLLENQLLREKTHGLVVENQELRQRLGM 139          
The following BLAST results are available for this feature:
BLAST of TCONS_00070200 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
XBP15.552e-1854.32X-box-binding protein 1 OS=Homo sapiens GN=XBP1 PE... [more]
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