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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070200 ID=TCONS_00070200|Name=TCONS_00070200|organism=Clytia hemisphaerica|type=transcript|length=1793bp AACGTGGAGTCGATATAAATGCTAAATCCtttgtaaaatgtgacaaaaat attgacttaTAGCATCATTACAACTTGCtatataatttaaaaataatgat gaagatcaattattttgaaatatcacGAATCCCTACAGTTGAcgcaaaaa aagttttagcAACCATTGAAGATGATGAACGAAATCCTAACCGTAAAAGA AGGAGACTTGACAACCTGAATGTAGAAGAAAGAATACTCAGGAGGAAATT GAAAAACAGAGTTGCTGCCCAAAGTGCACGAGACCGAAAGAAAGCACACA TGGACCAACTTGAAATTACACTTATGCGAGTTGAAAAAGagaacaaattt ttgaagaaaagcaATGAGGAATTAAGATCACAAGTTCATCAATTAATGGA AAATAATGCACAGCTCAGATCAAAGCTTGGCTTAACCCCACCTGCTTCAC CATCTCAAGATTATACCTGTGTTATTGTCcccaaacaaaaagaaaatatc attaCACCTTCAGTGTGTGACCATGACCACATTGtgatcaaaaaagaaga aatgtcACCGGAGCATGCATTGCTTTTTGGGCTTTCCCTGCTGTGGAATA TCCTGATGACGACTCTTGTTTTGATGATCACGGCGTGCAAgatgagtccc agGCTGAATTATTTCTCGATATTGTTGGTGATAACGAACCAGTCAAGATG GAAGAATCCAAAATCAGTGAGGCCCCAAATCCCACCAGATATACAATTAT CGAAAACAAGCCAATTAGCCATTGTCCAACAATTAGAGGACAAAACGATA ACAACAACGAAATCAAATGTGAAGAATTCGATGTTGATGAGTTTTTGTCA AATGAGACTAATGACTTTGCTTGCCCGTCAAGCCCTGACTCTGAGCCAGT ATCACCATCTGATTCAACAATCGTTGAGATCGATAGTAGTTTCCAGATGC ACAACGCCACGGCTGAAAGTAGCGTGGTGGGCAAACCAGCCGATGATGGA TACGGGATGATACAAGGTGGCTCTTTTATTGATGATGAGTTTTTGTTGTC CTCGTGCGCCACCAATGATGAGTTAAATGATGAATGCAATATTACTGATG TAGATGATCCTTTTTCTGAGTTATTTCCAACGTTGCTGAGTGTTTGAGTT ATTGTCTGACCTCGATAGTGTTTAGTTCTTATTGCAGTTTTCTTGATCTT CCTGGGACTAAATTCTATTGATTCATTTTGTATGTATCATAGTGAATTAA TTTTATCTTAGCTTTACATATtaaatttatttgaatttgaaatccatcca tttattttttatatccgAAAAGTCTGTTATTTATGAACAGcaagttttag atttttatcTCTTTCCTCTTTTCTCTGACTggcgtttttatttttaattt ataagttttttttactattttggaaatattttcctACCTTGTGTTGCTTA AAAATCTCATGAAACAACGTCAGAATTATTATCATTTATTAGGAGTAATA TTattattttgtatatatttaaCTTCATTGAAACAAAAGGGcataaatac aacaaaaaaatgttcaaaactgaaaaaaacccACTCTCCATCTCTTTTGC TGTTAGTCAACAATTCATCTTGATTAATTCCATGAGGGATGTAAAGTGAT TCATTGAGTAAGACCCCCTACGTACATTAGATTTAAACTTGGGATGAATA GAACTTTTAATACTCTGATGGAAAAGATTCTATAGGACAACTGGTTTAAA TGATTATATgaaaaaagtaataagaaaTGCACATCTCCCTTTT Run BLAST on NCBI transcript from alignment at scaffold_516:108022..111162+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070200 ID=TCONS_00070200|Name=TCONS_00070200|organism=Clytia hemisphaerica|type=transcript|length=3141bp|location=Sequence derived from alignment at scaffold_516:108022..111162+ (Clytia hemisphaerica) AACGTGGAGTCGATATAAATGCTAAATCCtttgtaaaatggtaaaatata
CTTTAGTTCGGATTTTAAAATGTATTGATGATTATCTTCTCAAATTGATT
TGGTTTATTAGTGTATTCATAGTAGTATAAAATAAGATAACTGTCTGTTG
AGGTAAACTTATAtgtttgattttacttgctTTGTTGTTGTGCgtgaaaa
gaaaaatggaatGTCATTATTTTCCCACGATGTATCTAATGTAATTTATA
TTTCATTTtagtgacaaaaatattgacttaTAGCATCATTACAACTTGCt
atataatttaaaaataatgatgaagatcaattattttgaaatatcacGAA
TCCCTACAGTTGAcgcaaaaaaagttttagcAACCATTGAAGATGATGAA
CGAAATCCTAACCGTAAAAGAAGGAGACTTGACAACCTGAATGTAGAAGA
AAGAATACTCAGGAGGTAATTTCTTTACACTTCAGTTGGTTGTATCTTTC
ATTGAGAACGGTCTGCTTAACCAATCTTCCAGGATGGTAAGGAAAACTAG
TGAGATAAAAATTACAATATCTTTGTTTTTGGAGAAACANTGGATGGTAA
GAAAAACTAGTGAgataaaaattacaatataaTATCTTTGTTTTTGGAGA
AACAAGTTATTTGAAAATGGTTTATTTTTAGAGAATTTGTGTAATGCCGA
CATACCTGGTCTGCAAAGTAGGTAGAGTGATTTATTTAACCTTACTTTTT
ACCTTTACTTTATATTTCAATTTCAGGAAATTGAAAAACAGAGTTGCTGC
CCAAAGTGCACGAGACCGAAAGAAAGCACACATGGACCAACTTGAAATTA
CACTTATGCGAGTTGAAAAAGaggtttgattttgaagaccttaaaagtta
tttttccaGAAAACTTATTTTATTCATATTATGCATTAATCTAGGTACtg
acaatttcaaaaatttactttttaaatGGTTCTTTTTAACATTATTTTAC
TTACTTGTGCAATTTCAGTCTAATCATATTTTTCCTTGTTTCTAATTATT
AGaacaaatttttgaagaaaagcaATGAGGAATTAAGATCACAAGTTCAT
CAATTAATGGAAAATAATGCACAGCTCAGATCAAAGCTTGGCTTAACCCC
ACCTGCTTCACCATCTCAAGATTATACCTGTGTTATTGTCcccaaacaaa
aagaaaatatcattaCACCTTCAGTGTGTGACCATGACCACATTGtgatc
aaaaaagaagaaatgtcACCGGAGCATGCATTGCTTTTTGGGCTTTCCCT
GCTGTGGAATATCCTGATGACGACTCTTGTTTTGATGATCACGGCGTGCA
AgatgagtcccaggtagggtttTTGGATAAAGGTTTTATACTTAAGGGGG
TTAATTTTTAATTCTTCgtgtgatttttgaaatatgcagTGTCACTTTAA
TTGACTGATGCTTTTAAGCTTTTTTGAGCACTGGTACCAGAATTGTGTTG
AAAGTGAGCAATAAACCTTTtgtttgaattgttttgttttctcaaCTGAT
CATAATGTTCAATATGTGCAGCTGTCTCAATATCTCCTTTCATCAGATTG
AAATTAGAGTAGAATTGAATTTCATTGAACAGCTGCCCTTACttctaaaa
taaaagtaaataaaaagttcaattttaaaaagcttttccCTCTTTTTATT
TGCATGTGTTTGCAAATTtcctttaaatttaaaaatcaNATTTAAAAAGC
AAagattaaagaaattttttactTGCTTTTCCCTCTTTTTATTTGCATGT
GTTTGTAAATTtcctttaaatttaaaaatcaacAATTGATTGAACTAGTT
CTCTATAGAATTTTCTAGGGTGAAATCCCCTTTGTAAGCACCATGTTTaa
tctgtttttcattttccccagGCTGAATTATTTCTCGATATTGTTGGTGA
TAACGAACCAGTCAAGATGGAAGAATCCAAAATCAGTGAGGCCTCAAATC
CCACCAGATATACAATTATCGAAAACAAGCCAATTAGCCATTGTCCAACA
ATTAGAGGANATCAGTGAGGCCCCAAATCCCACCAGATATACAATTATCG
AAAACAAGCCAATTAGCCATTGTCCAACAATTAGAGGACAAAACGATAAC
AACAACGAAATCAAATGTGAAGAATTCGATGTTGATGAGTTTTTGTCAAA
TGAGACTAATGACTTTGCTTGCCCGTCAAGCCCTGACTCTGAGCCAGTAT
CACCATCTGATTCAACAATCGTTGAGATCGATAGTAGTTTCCAGATGCAC
AACGCCACGGCTGAAAGTAGCGTGGTGGGCAAACCAGCCGATGATGGATA
CGGGATGATACAAGGTGGCTCTTTTATTGATGATGAGTTTTTGTTGTCCT
CGTGCGCCACCAATGATGAGTTAAATGATGAATGCAATATTACTGATGTA
GATGATCCTTTTTCTGAGTTATTTCCAACGTTGCTGAGTGTTTGAGTTAT
TGTCTGACCTCGATAGTGTTTAGTTCTTATTGCAGTTTTCTTGATCTTCC
TGGGACTAAATTCTATTGATTCATTTTGTATGTATCATAGTGAATTAATT
TTATCTTAGCTTTACATATtaaatttatttgaatttgaaatccatccatt
tattttttatatccgAAAAGTCTGTTATTTATGAACAGcaagttttagat
ttttatcTCTTTCCTCTTTTCTCTGACTggcgtttttatttttaatttat
aagttttttttactattttggaaatattttcctACCTTGTGTTGCTTAAA
AATCTCATGAAACAACGTCAGAATTATTATCATTTATTAGGAGTAATATT
attattttgtatatatttaaCTTCATTGAAACAAAAGGGcataaatacaa
caaaaaaatgttcaaaactgaaaaaaacccACTCTCCATCTCTTTTGCTG
TTAGTCAACAATTCATCTTGATTAATTCCATGAGGGATGTAAAGTGATTC
ATTGAGTAAGACCCCCTACGTACATTAGATTTAAACTTGGGATGAATAGA
ACTTTTAATACTCTGATGGAAAAGATTCTATAGGACAACTGGTTTAAATG
ATTATATgaaaaaagtaataagaaaTGCACATCTCCCTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00070200-exon-scaffold_516-1491911889:108022..108061 | TCONS_00070200-exon-scaffold_516-1491911889:108022..108061 | Clytia hemisphaerica | exon |
TCONS_00070200-exon-scaffold_516-1510915933:108022..108061 | TCONS_00070200-exon-scaffold_516-1510915933:108022..108061 | Clytia hemisphaerica | exon |
TCONS_00070200-exon-scaffold_516-1575043694:108022..108061 | TCONS_00070200-exon-scaffold_516-1575043694:108022..108061 | Clytia hemisphaerica | exon |
TCONS_00070200-exon-scaffold_516-1491911889:108283..108486 | TCONS_00070200-exon-scaffold_516-1491911889:108283..108486 | Clytia hemisphaerica | exon |
TCONS_00070200-exon-scaffold_516-1510915933:108283..108486 | TCONS_00070200-exon-scaffold_516-1510915933:108283..108486 | Clytia hemisphaerica | exon |
TCONS_00070200-exon-scaffold_516-1575043694:108283..108486 | TCONS_00070200-exon-scaffold_516-1575043694:108283..108486 | Clytia hemisphaerica | exon |
TCONS_00070200-exon-scaffold_516-1491911889:108798..108894 | TCONS_00070200-exon-scaffold_516-1491911889:108798..108894 | Clytia hemisphaerica | exon |
TCONS_00070200-exon-scaffold_516-1510915933:108798..108894 | TCONS_00070200-exon-scaffold_516-1510915933:108798..108894 | Clytia hemisphaerica | exon |
TCONS_00070200-exon-scaffold_516-1575043694:108798..108894 | TCONS_00070200-exon-scaffold_516-1575043694:108798..108894 | Clytia hemisphaerica | exon |
TCONS_00070200-exon-scaffold_516-1491911889:109074..109384 | TCONS_00070200-exon-scaffold_516-1491911889:109074..109384 | Clytia hemisphaerica | exon |
TCONS_00070200-exon-scaffold_516-1510915933:109074..109384 | TCONS_00070200-exon-scaffold_516-1510915933:109074..109384 | Clytia hemisphaerica | exon |
TCONS_00070200-exon-scaffold_516-1575043694:109074..109384 | TCONS_00070200-exon-scaffold_516-1575043694:109074..109384 | Clytia hemisphaerica | exon |
TCONS_00070200-exon-scaffold_516-1491911889:109943..110011 | TCONS_00070200-exon-scaffold_516-1491911889:109943..110011 | Clytia hemisphaerica | exon |
TCONS_00070200-exon-scaffold_516-1510915933:109943..110011 | TCONS_00070200-exon-scaffold_516-1510915933:109943..110011 | Clytia hemisphaerica | exon |
TCONS_00070200-exon-scaffold_516-1575043694:109943..110011 | TCONS_00070200-exon-scaffold_516-1575043694:109943..110011 | Clytia hemisphaerica | exon |
TCONS_00070200-exon-scaffold_516-1491911889:110091..111162 | TCONS_00070200-exon-scaffold_516-1491911889:110091..111162 | Clytia hemisphaerica | exon |
TCONS_00070200-exon-scaffold_516-1510915933:110091..111162 | TCONS_00070200-exon-scaffold_516-1510915933:110091..111162 | Clytia hemisphaerica | exon |
TCONS_00070200-exon-scaffold_516-1575043694:110091..111162 | TCONS_00070200-exon-scaffold_516-1575043694:110091..111162 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_516 | supercontig | scaffold_516:108022..111162 + |
Blast
BLAST of TCONS_00070200 vs. Swiss-Prot (Human)
Match: XBP1 (X-box-binding protein 1 OS=Homo sapiens GN=XBP1 PE=1 SV=2) HSP 1 Score: 84.7297 bits (208), Expect = 5.552e-18 Identity = 44/81 (54.32%), Postives = 61/81 (75.31%), Query Frame = 3
Query: 192 RKRRRLDNLNVEERILRRKLKNRVAAQSARDRKKAHMDQLEITLMRVEKENKFLKKSNEELRSQVHQLMENNAQLRSKLGL 434
RKR+RL +L+ EE+ LRRKLKNRVAAQ+ARDRKKA M +LE ++ +E+EN+ L N+ LR + H L+ N +LR +LG+
Sbjct: 59 RKRQRLTHLSPEEKALRRKLKNRVAAQTARDRKKARMSELEQQVVDLEEENQKLLLENQLLREKTHGLVVENQELRQRLGM 139
The following BLAST results are available for this feature:
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