TCONS_00070200 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070200
Unique NameTCONS_00070200
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1793

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070200 ID=TCONS_00070200|Name=TCONS_00070200|organism=Clytia hemisphaerica|type=transcript|length=1793bp
AACGTGGAGTCGATATAAATGCTAAATCCtttgtaaaatgtgacaaaaat
attgacttaTAGCATCATTACAACTTGCtatataatttaaaaataatgat
gaagatcaattattttgaaatatcacGAATCCCTACAGTTGAcgcaaaaa
aagttttagcAACCATTGAAGATGATGAACGAAATCCTAACCGTAAAAGA
AGGAGACTTGACAACCTGAATGTAGAAGAAAGAATACTCAGGAGGAAATT
GAAAAACAGAGTTGCTGCCCAAAGTGCACGAGACCGAAAGAAAGCACACA
TGGACCAACTTGAAATTACACTTATGCGAGTTGAAAAAGagaacaaattt
ttgaagaaaagcaATGAGGAATTAAGATCACAAGTTCATCAATTAATGGA
AAATAATGCACAGCTCAGATCAAAGCTTGGCTTAACCCCACCTGCTTCAC
CATCTCAAGATTATACCTGTGTTATTGTCcccaaacaaaaagaaaatatc
attaCACCTTCAGTGTGTGACCATGACCACATTGtgatcaaaaaagaaga
aatgtcACCGGAGCATGCATTGCTTTTTGGGCTTTCCCTGCTGTGGAATA
TCCTGATGACGACTCTTGTTTTGATGATCACGGCGTGCAAgatgagtccc
agGCTGAATTATTTCTCGATATTGTTGGTGATAACGAACCAGTCAAGATG
GAAGAATCCAAAATCAGTGAGGCCCCAAATCCCACCAGATATACAATTAT
CGAAAACAAGCCAATTAGCCATTGTCCAACAATTAGAGGACAAAACGATA
ACAACAACGAAATCAAATGTGAAGAATTCGATGTTGATGAGTTTTTGTCA
AATGAGACTAATGACTTTGCTTGCCCGTCAAGCCCTGACTCTGAGCCAGT
ATCACCATCTGATTCAACAATCGTTGAGATCGATAGTAGTTTCCAGATGC
ACAACGCCACGGCTGAAAGTAGCGTGGTGGGCAAACCAGCCGATGATGGA
TACGGGATGATACAAGGTGGCTCTTTTATTGATGATGAGTTTTTGTTGTC
CTCGTGCGCCACCAATGATGAGTTAAATGATGAATGCAATATTACTGATG
TAGATGATCCTTTTTCTGAGTTATTTCCAACGTTGCTGAGTGTTTGAGTT
ATTGTCTGACCTCGATAGTGTTTAGTTCTTATTGCAGTTTTCTTGATCTT
CCTGGGACTAAATTCTATTGATTCATTTTGTATGTATCATAGTGAATTAA
TTTTATCTTAGCTTTACATATtaaatttatttgaatttgaaatccatcca
tttattttttatatccgAAAAGTCTGTTATTTATGAACAGcaagttttag
atttttatcTCTTTCCTCTTTTCTCTGACTggcgtttttatttttaattt
ataagttttttttactattttggaaatattttcctACCTTGTGTTGCTTA
AAAATCTCATGAAACAACGTCAGAATTATTATCATTTATTAGGAGTAATA
TTattattttgtatatatttaaCTTCATTGAAACAAAAGGGcataaatac
aacaaaaaaatgttcaaaactgaaaaaaacccACTCTCCATCTCTTTTGC
TGTTAGTCAACAATTCATCTTGATTAATTCCATGAGGGATGTAAAGTGAT
TCATTGAGTAAGACCCCCTACGTACATTAGATTTAAACTTGGGATGAATA
GAACTTTTAATACTCTGATGGAAAAGATTCTATAGGACAACTGGTTTAAA
TGATTATATgaaaaaagtaataagaaaTGCACATCTCCCTTTT
Run BLAST on NCBI

transcript from alignment at scaffold_516:108022..111162+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070200 ID=TCONS_00070200|Name=TCONS_00070200|organism=Clytia hemisphaerica|type=transcript|length=3141bp|location=Sequence derived from alignment at scaffold_516:108022..111162+ (Clytia hemisphaerica)
AACGTGGAGTCGATATAAATGCTAAATCCtttgtaaaatggtaaaatata
CTTTAGTTCGGATTTTAAAATGTATTGATGATTATCTTCTCAAATTGATT
TGGTTTATTAGTGTATTCATAGTAGTATAAAATAAGATAACTGTCTGTTG
AGGTAAACTTATAtgtttgattttacttgctTTGTTGTTGTGCgtgaaaa
gaaaaatggaatGTCATTATTTTCCCACGATGTATCTAATGTAATTTATA
TTTCATTTtagtgacaaaaatattgacttaTAGCATCATTACAACTTGCt
atataatttaaaaataatgatgaagatcaattattttgaaatatcacGAA
TCCCTACAGTTGAcgcaaaaaaagttttagcAACCATTGAAGATGATGAA
CGAAATCCTAACCGTAAAAGAAGGAGACTTGACAACCTGAATGTAGAAGA
AAGAATACTCAGGAGGTAATTTCTTTACACTTCAGTTGGTTGTATCTTTC
ATTGAGAACGGTCTGCTTAACCAATCTTCCAGGATGGTAAGGAAAACTAG
TGAGATAAAAATTACAATATCTTTGTTTTTGGAGAAACANTGGATGGTAA
GAAAAACTAGTGAgataaaaattacaatataaTATCTTTGTTTTTGGAGA
AACAAGTTATTTGAAAATGGTTTATTTTTAGAGAATTTGTGTAATGCCGA
CATACCTGGTCTGCAAAGTAGGTAGAGTGATTTATTTAACCTTACTTTTT
ACCTTTACTTTATATTTCAATTTCAGGAAATTGAAAAACAGAGTTGCTGC
CCAAAGTGCACGAGACCGAAAGAAAGCACACATGGACCAACTTGAAATTA
CACTTATGCGAGTTGAAAAAGaggtttgattttgaagaccttaaaagtta
tttttccaGAAAACTTATTTTATTCATATTATGCATTAATCTAGGTACtg
acaatttcaaaaatttactttttaaatGGTTCTTTTTAACATTATTTTAC
TTACTTGTGCAATTTCAGTCTAATCATATTTTTCCTTGTTTCTAATTATT
AGaacaaatttttgaagaaaagcaATGAGGAATTAAGATCACAAGTTCAT
CAATTAATGGAAAATAATGCACAGCTCAGATCAAAGCTTGGCTTAACCCC
ACCTGCTTCACCATCTCAAGATTATACCTGTGTTATTGTCcccaaacaaa
aagaaaatatcattaCACCTTCAGTGTGTGACCATGACCACATTGtgatc
aaaaaagaagaaatgtcACCGGAGCATGCATTGCTTTTTGGGCTTTCCCT
GCTGTGGAATATCCTGATGACGACTCTTGTTTTGATGATCACGGCGTGCA
AgatgagtcccaggtagggtttTTGGATAAAGGTTTTATACTTAAGGGGG
TTAATTTTTAATTCTTCgtgtgatttttgaaatatgcagTGTCACTTTAA
TTGACTGATGCTTTTAAGCTTTTTTGAGCACTGGTACCAGAATTGTGTTG
AAAGTGAGCAATAAACCTTTtgtttgaattgttttgttttctcaaCTGAT
CATAATGTTCAATATGTGCAGCTGTCTCAATATCTCCTTTCATCAGATTG
AAATTAGAGTAGAATTGAATTTCATTGAACAGCTGCCCTTACttctaaaa
taaaagtaaataaaaagttcaattttaaaaagcttttccCTCTTTTTATT
TGCATGTGTTTGCAAATTtcctttaaatttaaaaatcaNATTTAAAAAGC
AAagattaaagaaattttttactTGCTTTTCCCTCTTTTTATTTGCATGT
GTTTGTAAATTtcctttaaatttaaaaatcaacAATTGATTGAACTAGTT
CTCTATAGAATTTTCTAGGGTGAAATCCCCTTTGTAAGCACCATGTTTaa
tctgtttttcattttccccagGCTGAATTATTTCTCGATATTGTTGGTGA
TAACGAACCAGTCAAGATGGAAGAATCCAAAATCAGTGAGGCCTCAAATC
CCACCAGATATACAATTATCGAAAACAAGCCAATTAGCCATTGTCCAACA
ATTAGAGGANATCAGTGAGGCCCCAAATCCCACCAGATATACAATTATCG
AAAACAAGCCAATTAGCCATTGTCCAACAATTAGAGGACAAAACGATAAC
AACAACGAAATCAAATGTGAAGAATTCGATGTTGATGAGTTTTTGTCAAA
TGAGACTAATGACTTTGCTTGCCCGTCAAGCCCTGACTCTGAGCCAGTAT
CACCATCTGATTCAACAATCGTTGAGATCGATAGTAGTTTCCAGATGCAC
AACGCCACGGCTGAAAGTAGCGTGGTGGGCAAACCAGCCGATGATGGATA
CGGGATGATACAAGGTGGCTCTTTTATTGATGATGAGTTTTTGTTGTCCT
CGTGCGCCACCAATGATGAGTTAAATGATGAATGCAATATTACTGATGTA
GATGATCCTTTTTCTGAGTTATTTCCAACGTTGCTGAGTGTTTGAGTTAT
TGTCTGACCTCGATAGTGTTTAGTTCTTATTGCAGTTTTCTTGATCTTCC
TGGGACTAAATTCTATTGATTCATTTTGTATGTATCATAGTGAATTAATT
TTATCTTAGCTTTACATATtaaatttatttgaatttgaaatccatccatt
tattttttatatccgAAAAGTCTGTTATTTATGAACAGcaagttttagat
ttttatcTCTTTCCTCTTTTCTCTGACTggcgtttttatttttaatttat
aagttttttttactattttggaaatattttcctACCTTGTGTTGCTTAAA
AATCTCATGAAACAACGTCAGAATTATTATCATTTATTAGGAGTAATATT
attattttgtatatatttaaCTTCATTGAAACAAAAGGGcataaatacaa
caaaaaaatgttcaaaactgaaaaaaacccACTCTCCATCTCTTTTGCTG
TTAGTCAACAATTCATCTTGATTAATTCCATGAGGGATGTAAAGTGATTC
ATTGAGTAAGACCCCCTACGTACATTAGATTTAAACTTGGGATGAATAGA
ACTTTTAATACTCTGATGGAAAAGATTCTATAGGACAACTGGTTTAAATG
ATTATATgaaaaaagtaataagaaaTGCACATCTCCCTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043724XLOC_043724Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070200-exon-scaffold_516-1491911889:108022..108061TCONS_00070200-exon-scaffold_516-1491911889:108022..108061Clytia hemisphaericaexon
TCONS_00070200-exon-scaffold_516-1510915933:108022..108061TCONS_00070200-exon-scaffold_516-1510915933:108022..108061Clytia hemisphaericaexon
TCONS_00070200-exon-scaffold_516-1575043694:108022..108061TCONS_00070200-exon-scaffold_516-1575043694:108022..108061Clytia hemisphaericaexon
TCONS_00070200-exon-scaffold_516-1491911889:108283..108486TCONS_00070200-exon-scaffold_516-1491911889:108283..108486Clytia hemisphaericaexon
TCONS_00070200-exon-scaffold_516-1510915933:108283..108486TCONS_00070200-exon-scaffold_516-1510915933:108283..108486Clytia hemisphaericaexon
TCONS_00070200-exon-scaffold_516-1575043694:108283..108486TCONS_00070200-exon-scaffold_516-1575043694:108283..108486Clytia hemisphaericaexon
TCONS_00070200-exon-scaffold_516-1491911889:108798..108894TCONS_00070200-exon-scaffold_516-1491911889:108798..108894Clytia hemisphaericaexon
TCONS_00070200-exon-scaffold_516-1510915933:108798..108894TCONS_00070200-exon-scaffold_516-1510915933:108798..108894Clytia hemisphaericaexon
TCONS_00070200-exon-scaffold_516-1575043694:108798..108894TCONS_00070200-exon-scaffold_516-1575043694:108798..108894Clytia hemisphaericaexon
TCONS_00070200-exon-scaffold_516-1491911889:109074..109384TCONS_00070200-exon-scaffold_516-1491911889:109074..109384Clytia hemisphaericaexon
TCONS_00070200-exon-scaffold_516-1510915933:109074..109384TCONS_00070200-exon-scaffold_516-1510915933:109074..109384Clytia hemisphaericaexon
TCONS_00070200-exon-scaffold_516-1575043694:109074..109384TCONS_00070200-exon-scaffold_516-1575043694:109074..109384Clytia hemisphaericaexon
TCONS_00070200-exon-scaffold_516-1491911889:109943..110011TCONS_00070200-exon-scaffold_516-1491911889:109943..110011Clytia hemisphaericaexon
TCONS_00070200-exon-scaffold_516-1510915933:109943..110011TCONS_00070200-exon-scaffold_516-1510915933:109943..110011Clytia hemisphaericaexon
TCONS_00070200-exon-scaffold_516-1575043694:109943..110011TCONS_00070200-exon-scaffold_516-1575043694:109943..110011Clytia hemisphaericaexon
TCONS_00070200-exon-scaffold_516-1491911889:110091..111162TCONS_00070200-exon-scaffold_516-1491911889:110091..111162Clytia hemisphaericaexon
TCONS_00070200-exon-scaffold_516-1510915933:110091..111162TCONS_00070200-exon-scaffold_516-1510915933:110091..111162Clytia hemisphaericaexon
TCONS_00070200-exon-scaffold_516-1575043694:110091..111162TCONS_00070200-exon-scaffold_516-1575043694:110091..111162Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_516supercontigscaffold_516:108022..111162 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.35525	12.9136	2.36295	5.61946	205.236	158.837	226.669	238.201	23.1929	13.029	23.4693	26.6073	38.2726	38.4442	31.7056	46.6756	9.2154	17.3658	45.6981	18.2032	44.5758	41.4445	33.5889	45.8195	47.4494	81.3012	57.8302	62.2608	30.1609	35.8976
Blast
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BLAST of TCONS_00070200 vs. Swiss-Prot (Human)
Match: XBP1 (X-box-binding protein 1 OS=Homo sapiens GN=XBP1 PE=1 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 5.552e-18
Identity = 44/81 (54.32%), Postives = 61/81 (75.31%), Query Frame = 3 
Query:  192 RKRRRLDNLNVEERILRRKLKNRVAAQSARDRKKAHMDQLEITLMRVEKENKFLKKSNEELRSQVHQLMENNAQLRSKLGL 434
            RKR+RL +L+ EE+ LRRKLKNRVAAQ+ARDRKKA M +LE  ++ +E+EN+ L   N+ LR + H L+  N +LR +LG+
Sbjct:   59 RKRQRLTHLSPEEKALRRKLKNRVAAQTARDRKKARMSELEQQVVDLEEENQKLLLENQLLREKTHGLVVENQELRQRLGM 139
The following BLAST results are available for this feature:
BLAST of TCONS_00070200 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
XBP15.552e-1854.32X-box-binding protein 1 OS=Homo sapiens GN=XBP1 PE... [more]
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