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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068072 ID=TCONS_00068072|Name=TCONS_00068072|organism=Clytia hemisphaerica|type=transcript|length=2089bp CTGACATCCATAAGCGTTTGTTGTTATCGCTTCTTTCAGCCTCACCACAC TCTTGAGAATAAGGGAGAGAGTACTCATCGATgattagcctgtaccaaac tctccTACGCTGACTAAAAAAATAACGCGAAGTTCGGTTTGTTACGGTTA GGCATCGTTCCGTTTGGGCGGGATGATACAAGCTAATCGATGATTGGACG AGTAGacattttcctttttctctCGAAACTTAGATTTTAAAGAAGCGAGC GCAGTGCGCGCTTATGGAGATCAAGAGATAACTAAAAACATAAATTCGTA GATTAATACAAGTTATACAGCTCATAAATCATGGTTTGTTATATTGTTAT TTTCTAACAGTTCATGCTCTTGAGTCTCACCGTTCGGGTGATGCGGCCTC TTAGGGCCAAAACGTCGCTTGAAAGTACCCCCTTTACTTGAGAATAAATT AGCTCCTGAAAATCGACGATTAGTTTTTGTTTCTTCACCGTCATCCAAAT CCTCAATAGTGGTATGTCTGCGATCGTGATTATCAATCGTGTCTTCTTTC TCCAAACGTGTAAAACATTTCAAGAATGGTAAATATTTCTGGAATTTCAC TCTGAAAGCTTTACTTAGATGATATAAAATGACAGAATTACATGCGCTGT AAGCTATCCCTAACATGGCAGCCACGTGCATAAAACTTGTAATAAGTTCA GGATATTGTCCTAAAGATGGAACATAATGGTATACTATTGTCAGTGTATT ATACGGGAAATAACAAATTACGAATGTTAGGAAGATGACGAAAAACATAG TCATTActcttttttgtcttttaagTCTGACCACTTGTGATTTCCCTGTT ACTGAGCGTTGCAGGAAACGCATGCTGTTTCCTAACACCTTGTTCACACg cacgaaacaaaaaaatatgatGCTTGACGGTAACACGTATAGTAACACTG TCCGTAAAGTGAAATACGTACGTCTTAACGATGCCGATGTGAAATTAGCC ATGCACTGTGATGGAGCGATATACGTCATGACAAAAGTCACAGGAAGTCC GACGACTAGATAATTGCCGATCCAGTTCGCAGCTAAAAGTAGGATAATAT ATTTTAGACTTACTGCTGTTGCCAACGTTGCCGTTATTGCTCGGTATCGG TCGATATAGATTGCCACAAGAGTTAAGATCGATACAGATGGAAAAATATC GAAGATAGGAACAACATAAATGCATGAAAATTCACCAAAAGGCCATCCTG GTAATAACAGGTATGGTGCTAATTGCTGCCAGATTTTCATTGGTAGATTA ACGAGTGTGACAAGATCGGTTATGGCTAAGTTGAAGACGAAGAAGTTCTG TGTTGAATGCATTGATTTTGTTGTAAGGATTGTAAGCACGATCATGATGT TCCCTGTGACTCCGATGATGAAGATTACGATTTCTATGATAATGATTATA ATAATAAAGACACTTGGTATTCTTCTTTGCCGATGTTGTCGGCGTCGGTG ATGTATACATATGCTACTGTTTGGGAGTATTTTTGATGCATTGGTATTAT ACTCATTGTCATCTTTTAGGCTTGTGTAATTGACTAAATCTTCGGCGTCT GAGTCAGAGCTATTTAGAGTACCATAATTGTTAGGTGATATCGCTTGGTG CGCCCGGTCTATACTTATTTGTCTGCCAGTTTCATTATTTCTCGTTGTGT TATTTTGACCGTTGCAGATTCTATCTAGCATtgttttgtttaaagaaaac ttGTTTAGGTTAGGTAAGGTTGGATCATCGAGTTTGGATGTTTCAGATAA AGCTGGTTCATCGAGTCTAGAGGTTTCATCTAAAGTTGGATTATCGAGTT TAGACACTCCATTTAAAGTTAGATTATCGAGTTTAGACGCTCCATTTAAA GTTGGACTATCGAGGTTAGACGCTTCAGGTAAAGTTGGGTCATCAAGTTT GGACGCTCCAATGGGTTGAGAATTATTATTTTGATGGTTGTGAGTTTTAA TTATTGAATTGTTGAGGGGTTTTGATTGATCGGATGCGCTGATAAATCCA ACGATTGaattgaaaatgatgatgaagaTAATAGACCTc Run BLAST on NCBI protein sequence of TCONS_00068072-protein >TCONS_00068072-protein ID=TCONS_00068072-protein|Name=TCONS_00068072-protein|organism=Clytia hemisphaerica|type=polypeptide|length=588bp
RSIIFIIIFNSIVGFISASDQSKPLNNSIIKTHNHQNNNSQPIGASKLDD PTLPEASNLDSPTLNGASKLDNLTLNGVSKLDNPTLDETSRLDEPALSET SKLDDPTLPNLNKFSLNKTMLDRICNGQNNTTRNNETGRQISIDRAHQAI SPNNYGTLNSSDSDAEDLVNYTSLKDDNEYNTNASKILPNSSICIHHRRR QHRQRRIPSVFIIIIIIIEIVIFIIGVTGNIMIVLTILTTKSMHSTQNFF VFNLAITDLVTLVNLPMKIWQQLAPYLLLPGWPFGEFSCIYVVPIFDIFP SVSILTLVAIYIDRYRAITATLATAVSLKYIILLLAANWIGNYLVVGLPV TFVMTYIAPSQCMANFTSASLRRTYFTLRTVLLYVLPSSIIFFCFVRVNK VLGNSMRFLQRSVTGKSQVVRLKRQKRVMTMFFVIFLTFVICYFPYNTLT IVYHYVPSLGQYPELITSFMHVAAMLGIAYSACNSVILYHLSKAFRVKFQ KYLPFLKCFTRLEKEDTIDNHDRRHTTIEDLDDGEETKTNRRFSGANLFS SKGGTFKRRFGPKRPHHPNGETQEHELLENNNITNHDL Run BLAST on NCBI transcript from alignment at scaffold_478:514486..516574 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068072 ID=TCONS_00068072|Name=TCONS_00068072|organism=Clytia hemisphaerica|type=transcript|length=2089bp|location=Sequence derived from alignment at scaffold_478:514486..516574 (Clytia hemisphaerica) gAGGTCTATTAtcttcatcatcattttcaattCAATCGTTGGATTTATCA
GCGCATCCGATCAATCAAAACCCCTCAACAATTCAATAATTAAAACTCAC
AACCATCAAAATAATAATTCTCAACCCATTGGAGCGTCCAAACTTGATGA
CCCAACTTTACCTGAAGCGTCTAACCTCGATAGTCCAACTTTAAATGGAG
CGTCTAAACTCGATAATCTAACTTTAAATGGAGTGTCTAAACTCGATAAT
CCAACTTTAGATGAAACCTCTAGACTCGATGAACCAGCTTTATCTGAAAC
ATCCAAACTCGATGATCCAACCTTACCTAACCTAAACaagttttctttaa
acaaaacaATGCTAGATAGAATCTGCAACGGTCAAAATAACACAACGAGA
AATAATGAAACTGGCAGACAAATAAGTATAGACCGGGCGCACCAAGCGAT
ATCACCTAACAATTATGGTACTCTAAATAGCTCTGACTCAGACGCCGAAG
ATTTAGTCAATTACACAAGCCTAAAAGATGACAATGAGTATAATACCAAT
GCATCAAAAATACTCCCAAACAGTAGCATATGTATACATCACCGACGCCG
ACAACATCGGCAAAGAAGAATACCAAGTGTCTTTATTATTATAATCATTA
TCATAGAAATCGTAATCTTCATCATCGGAGTCACAGGGAACATCATGATC
GTGCTTACAATCCTTACAACAAAATCAATGCATTCAACACAGAACTTCTT
CGTCTTCAACTTAGCCATAACCGATCTTGTCACACTCGTTAATCTACCAA
TGAAAATCTGGCAGCAATTAGCACCATACCTGTTATTACCAGGATGGCCT
TTTGGTGAATTTTCATGCATTTATGTTGTTCCTATCTTCGATATTTTTCC
ATCTGTATCGATCTTAACTCTTGTGGCAATCTATATCGACCGATACCGAG
CAATAACGGCAACGTTGGCAACAGCAGTAAGTCTAAAATATATTATCCTA
CTTTTAGCTGCGAACTGGATCGGCAATTATCTAGTCGTCGGACTTCCTGT
GACTTTTGTCATGACGTATATCGCTCCATCACAGTGCATGGCTAATTTCA
CATCGGCATCGTTAAGACGTACGTATTTCACTTTACGGACAGTGTTACTA
TACGTGTTACCGTCAAGCatcatatttttttgtttcgtgcGTGTGAACAA
GGTGTTAGGAAACAGCATGCGTTTCCTGCAACGCTCAGTAACAGGGAAAT
CACAAGTGGTCAGActtaaaagacaaaaaagagTAATGACTATGTTTTTC
GTCATCTTCCTAACATTCGTAATTTGTTATTTCCCGTATAATACACTGAC
AATAGTATACCATTATGTTCCATCTTTAGGACAATATCCTGAACTTATTA
CAAGTTTTATGCACGTGGCTGCCATGTTAGGGATAGCTTACAGCGCATGT
AATTCTGTCATTTTATATCATCTAAGTAAAGCTTTCAGAGTGAAATTCCA
GAAATATTTACCATTCTTGAAATGTTTTACACGTTTGGAGAAAGAAGACA
CGATTGATAATCACGATCGCAGACATACCACTATTGAGGATTTGGATGAC
GGTGAAGAAACAAAAACTAATCGTCGATTTTCAGGAGCTAATTTATTCTC
AAGTAAAGGGGGTACTTTCAAGCGACGTTTTGGCCCTAAGAGGCCGCATC
ACCCGAACGGTGAGACTCAAGAGCATGAACTGTTAGAAAATAACAATATA
ACAAACCATGATTTATGAGCTGTATAACTTGTATTAATCTACGAATTTAT
GTTTTTAGTTATCTCTTGATCTCCATAAGCGCGCACTGCGCTCGCTTCTT
TAAAATCTAAGTTTCGagagaaaaaggaaaatgtCTACTCGTCCAATCAT
CGATTAGCTTGTATCATCCCGCCCAAACGGAACGATGCCTAACCGTAACA
AACCGAACTTCGCGTTATTTTTTTAGTCAGCGTAggagagtttggtacag
gctaatcATCGATGAGTACTCTCTCCCTTATTCTCAAGAGTGTGGTGAGG
CTGAAAGAAGCGATAACAACAAACGCTTATGGATGTCAG Coding sequence (CDS) from alignment at scaffold_478:514486..516574 >TCONS_00068072 ID=TCONS_00068072|Name=TCONS_00068072|organism=Clytia hemisphaerica|type=CDS|length=1767bp|location=Sequence derived from alignment at scaffold_478:514486..516574 (Clytia hemisphaerica) AGGTCTATTAtcttcatcatcattttcaattCAATCGTTGGATTTATCAG CGCATCCGATCAATCAAAACCCCTCAACAATTCAATAATTAAAACTCACA ACCATCAAAATAATAATTCTCAACCCATTGGAGCGTCCAAACTTGATGAC CCAACTTTACCTGAAGCGTCTAACCTCGATAGTCCAACTTTAAATGGAGC GTCTAAACTCGATAATCTAACTTTAAATGGAGTGTCTAAACTCGATAATC CAACTTTAGATGAAACCTCTAGACTCGATGAACCAGCTTTATCTGAAACA TCCAAACTCGATGATCCAACCTTACCTAACCTAAACaagttttctttaaa caaaacaATGCTAGATAGAATCTGCAACGGTCAAAATAACACAACGAGAA ATAATGAAACTGGCAGACAAATAAGTATAGACCGGGCGCACCAAGCGATA TCACCTAACAATTATGGTACTCTAAATAGCTCTGACTCAGACGCCGAAGA TTTAGTCAATTACACAAGCCTAAAAGATGACAATGAGTATAATACCAATG CATCAAAAATACTCCCAAACAGTAGCATATGTATACATCACCGACGCCGA CAACATCGGCAAAGAAGAATACCAAGTGTCTTTATTATTATAATCATTAT CATAGAAATCGTAATCTTCATCATCGGAGTCACAGGGAACATCATGATCG TGCTTACAATCCTTACAACAAAATCAATGCATTCAACACAGAACTTCTTC GTCTTCAACTTAGCCATAACCGATCTTGTCACACTCGTTAATCTACCAAT GAAAATCTGGCAGCAATTAGCACCATACCTGTTATTACCAGGATGGCCTT TTGGTGAATTTTCATGCATTTATGTTGTTCCTATCTTCGATATTTTTCCA TCTGTATCGATCTTAACTCTTGTGGCAATCTATATCGACCGATACCGAGC AATAACGGCAACGTTGGCAACAGCAGTAAGTCTAAAATATATTATCCTAC TTTTAGCTGCGAACTGGATCGGCAATTATCTAGTCGTCGGACTTCCTGTG ACTTTTGTCATGACGTATATCGCTCCATCACAGTGCATGGCTAATTTCAC ATCGGCATCGTTAAGACGTACGTATTTCACTTTACGGACAGTGTTACTAT ACGTGTTACCGTCAAGCatcatatttttttgtttcgtgcGTGTGAACAAG GTGTTAGGAAACAGCATGCGTTTCCTGCAACGCTCAGTAACAGGGAAATC ACAAGTGGTCAGActtaaaagacaaaaaagagTAATGACTATGTTTTTCG TCATCTTCCTAACATTCGTAATTTGTTATTTCCCGTATAATACACTGACA ATAGTATACCATTATGTTCCATCTTTAGGACAATATCCTGAACTTATTAC AAGTTTTATGCACGTGGCTGCCATGTTAGGGATAGCTTACAGCGCATGTA ATTCTGTCATTTTATATCATCTAAGTAAAGCTTTCAGAGTGAAATTCCAG AAATATTTACCATTCTTGAAATGTTTTACACGTTTGGAGAAAGAAGACAC GATTGATAATCACGATCGCAGACATACCACTATTGAGGATTTGGATGACG GTGAAGAAACAAAAACTAATCGTCGATTTTCAGGAGCTAATTTATTCTCA AGTAAAGGGGGTACTTTCAAGCGACGTTTTGGCCCTAAGAGGCCGCATCA CCCGAACGGTGAGACTCAAGAGCATGAACTGTTAGAAAATAACAATATAA CAAACCATGATTTATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00068072-exon-scaffold_478-1491911889:514486..516574 | TCONS_00068072-exon-scaffold_478-1491911889:514486..516574 | Clytia hemisphaerica | exon |
TCONS_00068072-exon-scaffold_478-1510915933:514486..516574 | TCONS_00068072-exon-scaffold_478-1510915933:514486..516574 | Clytia hemisphaerica | exon |
TCONS_00068072-exon-scaffold_478-1575043694:514486..516574 | TCONS_00068072-exon-scaffold_478-1575043694:514486..516574 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_478 | supercontig | scaffold_478:514486..516574 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
Term | Definition |
GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
Term | Definition |
GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
Term | Definition |
GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
cellular_component |
GO:0016021 |
integral component of membrane |
molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
BLAST of TCONS_00068072 vs. Swiss-Prot (Human)
Match: SSR5 (Somatostatin receptor type 5 OS=Homo sapiens GN=SSTR5 PE=1 SV=3) HSP 1 Score: 88.1965 bits (217), Expect = 1.097e-18 Identity = 84/320 (26.25%), Postives = 137/320 (42.81%), Query Frame = -2
Query: 469 GVTGNIMIVLTILTTKSMHSTQNFFVFNLAITDLVTLVNLPMKIWQQLAPYLLLPGWPFGEFSCIYVVPIFDIFPSVSILTLVAIYIDRYRAITATLATAVSLKYIILLL--AANWIGNYLVVGLPVTFVMTYIAPSQCMANFTS-ASLRRTYFTLRTVLL-YVLPSSIIFFCFVR-VNKVLGNSMRFLQRSVTGKSQVVRLKRQKRVMTMFFVIFLTFVICYFPYNTLTIVYHYVPSLGQYPELITSFMHVAAMLGIAYSACNSVILYHLSKAFRVKFQKYLPFLKCFTRLEKEDTIDNHDRRHTTIEDLDDGEETKTN 1413
G+ GN +++ +L M + N ++ NLA+ D++ ++ LP Q A + WPFG C V+ + + S+ L + +DRY A+ L++A + + L AA W+ + L + LP+ C A++ L F + T +L + P +I C++ V KV R+ + VR + +++V M V+ L F C+ P+ T+ IV V +L Q P + V +L A S N V+ LS FR FQK L K + + T DR E N
Sbjct: 54 GLGGNTLVIYVVLRFAKMKTVTNIYILNLAVADVLYMLGLPFLATQNAASF-----WPFGPVLCRLVMTLDGVNQFTSVFCLTVMSVDRYLAVVHPLSSARWRRPRVAKLASAAAWVLS-LCMSLPLLVFADVQEGGTCNASWPEPVGLWGAVFIIYTAVLGFFAPLLVICLCYLLIVVKV---------RAAGVRVGCVRRRSERKVTRMVLVVVLVFAGCWLPFFTVNIVNLAV-ALPQEPASAGLYFFV-VILSYANSCANPVLYGFLSDNFRQSFQKVLCLRKGSGAKDADATEPRPDRIRQQQEATPPAHRAAAN 356
The following BLAST results are available for this feature:
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