TCONS_00068072 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068072
Unique NameTCONS_00068072
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2089

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068072 ID=TCONS_00068072|Name=TCONS_00068072|organism=Clytia hemisphaerica|type=transcript|length=2089bp
CTGACATCCATAAGCGTTTGTTGTTATCGCTTCTTTCAGCCTCACCACAC
TCTTGAGAATAAGGGAGAGAGTACTCATCGATgattagcctgtaccaaac
tctccTACGCTGACTAAAAAAATAACGCGAAGTTCGGTTTGTTACGGTTA
GGCATCGTTCCGTTTGGGCGGGATGATACAAGCTAATCGATGATTGGACG
AGTAGacattttcctttttctctCGAAACTTAGATTTTAAAGAAGCGAGC
GCAGTGCGCGCTTATGGAGATCAAGAGATAACTAAAAACATAAATTCGTA
GATTAATACAAGTTATACAGCTCATAAATCATGGTTTGTTATATTGTTAT
TTTCTAACAGTTCATGCTCTTGAGTCTCACCGTTCGGGTGATGCGGCCTC
TTAGGGCCAAAACGTCGCTTGAAAGTACCCCCTTTACTTGAGAATAAATT
AGCTCCTGAAAATCGACGATTAGTTTTTGTTTCTTCACCGTCATCCAAAT
CCTCAATAGTGGTATGTCTGCGATCGTGATTATCAATCGTGTCTTCTTTC
TCCAAACGTGTAAAACATTTCAAGAATGGTAAATATTTCTGGAATTTCAC
TCTGAAAGCTTTACTTAGATGATATAAAATGACAGAATTACATGCGCTGT
AAGCTATCCCTAACATGGCAGCCACGTGCATAAAACTTGTAATAAGTTCA
GGATATTGTCCTAAAGATGGAACATAATGGTATACTATTGTCAGTGTATT
ATACGGGAAATAACAAATTACGAATGTTAGGAAGATGACGAAAAACATAG
TCATTActcttttttgtcttttaagTCTGACCACTTGTGATTTCCCTGTT
ACTGAGCGTTGCAGGAAACGCATGCTGTTTCCTAACACCTTGTTCACACg
cacgaaacaaaaaaatatgatGCTTGACGGTAACACGTATAGTAACACTG
TCCGTAAAGTGAAATACGTACGTCTTAACGATGCCGATGTGAAATTAGCC
ATGCACTGTGATGGAGCGATATACGTCATGACAAAAGTCACAGGAAGTCC
GACGACTAGATAATTGCCGATCCAGTTCGCAGCTAAAAGTAGGATAATAT
ATTTTAGACTTACTGCTGTTGCCAACGTTGCCGTTATTGCTCGGTATCGG
TCGATATAGATTGCCACAAGAGTTAAGATCGATACAGATGGAAAAATATC
GAAGATAGGAACAACATAAATGCATGAAAATTCACCAAAAGGCCATCCTG
GTAATAACAGGTATGGTGCTAATTGCTGCCAGATTTTCATTGGTAGATTA
ACGAGTGTGACAAGATCGGTTATGGCTAAGTTGAAGACGAAGAAGTTCTG
TGTTGAATGCATTGATTTTGTTGTAAGGATTGTAAGCACGATCATGATGT
TCCCTGTGACTCCGATGATGAAGATTACGATTTCTATGATAATGATTATA
ATAATAAAGACACTTGGTATTCTTCTTTGCCGATGTTGTCGGCGTCGGTG
ATGTATACATATGCTACTGTTTGGGAGTATTTTTGATGCATTGGTATTAT
ACTCATTGTCATCTTTTAGGCTTGTGTAATTGACTAAATCTTCGGCGTCT
GAGTCAGAGCTATTTAGAGTACCATAATTGTTAGGTGATATCGCTTGGTG
CGCCCGGTCTATACTTATTTGTCTGCCAGTTTCATTATTTCTCGTTGTGT
TATTTTGACCGTTGCAGATTCTATCTAGCATtgttttgtttaaagaaaac
ttGTTTAGGTTAGGTAAGGTTGGATCATCGAGTTTGGATGTTTCAGATAA
AGCTGGTTCATCGAGTCTAGAGGTTTCATCTAAAGTTGGATTATCGAGTT
TAGACACTCCATTTAAAGTTAGATTATCGAGTTTAGACGCTCCATTTAAA
GTTGGACTATCGAGGTTAGACGCTTCAGGTAAAGTTGGGTCATCAAGTTT
GGACGCTCCAATGGGTTGAGAATTATTATTTTGATGGTTGTGAGTTTTAA
TTATTGAATTGTTGAGGGGTTTTGATTGATCGGATGCGCTGATAAATCCA
ACGATTGaattgaaaatgatgatgaagaTAATAGACCTc
Run BLAST on NCBI

protein sequence of TCONS_00068072-protein

>TCONS_00068072-protein ID=TCONS_00068072-protein|Name=TCONS_00068072-protein|organism=Clytia hemisphaerica|type=polypeptide|length=588bp
RSIIFIIIFNSIVGFISASDQSKPLNNSIIKTHNHQNNNSQPIGASKLDD
PTLPEASNLDSPTLNGASKLDNLTLNGVSKLDNPTLDETSRLDEPALSET
SKLDDPTLPNLNKFSLNKTMLDRICNGQNNTTRNNETGRQISIDRAHQAI
SPNNYGTLNSSDSDAEDLVNYTSLKDDNEYNTNASKILPNSSICIHHRRR
QHRQRRIPSVFIIIIIIIEIVIFIIGVTGNIMIVLTILTTKSMHSTQNFF
VFNLAITDLVTLVNLPMKIWQQLAPYLLLPGWPFGEFSCIYVVPIFDIFP
SVSILTLVAIYIDRYRAITATLATAVSLKYIILLLAANWIGNYLVVGLPV
TFVMTYIAPSQCMANFTSASLRRTYFTLRTVLLYVLPSSIIFFCFVRVNK
VLGNSMRFLQRSVTGKSQVVRLKRQKRVMTMFFVIFLTFVICYFPYNTLT
IVYHYVPSLGQYPELITSFMHVAAMLGIAYSACNSVILYHLSKAFRVKFQ
KYLPFLKCFTRLEKEDTIDNHDRRHTTIEDLDDGEETKTNRRFSGANLFS
SKGGTFKRRFGPKRPHHPNGETQEHELLENNNITNHDL
Run BLAST on NCBI

transcript from alignment at scaffold_478:514486..516574

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068072 ID=TCONS_00068072|Name=TCONS_00068072|organism=Clytia hemisphaerica|type=transcript|length=2089bp|location=Sequence derived from alignment at scaffold_478:514486..516574 (Clytia hemisphaerica)
gAGGTCTATTAtcttcatcatcattttcaattCAATCGTTGGATTTATCA
GCGCATCCGATCAATCAAAACCCCTCAACAATTCAATAATTAAAACTCAC
AACCATCAAAATAATAATTCTCAACCCATTGGAGCGTCCAAACTTGATGA
CCCAACTTTACCTGAAGCGTCTAACCTCGATAGTCCAACTTTAAATGGAG
CGTCTAAACTCGATAATCTAACTTTAAATGGAGTGTCTAAACTCGATAAT
CCAACTTTAGATGAAACCTCTAGACTCGATGAACCAGCTTTATCTGAAAC
ATCCAAACTCGATGATCCAACCTTACCTAACCTAAACaagttttctttaa
acaaaacaATGCTAGATAGAATCTGCAACGGTCAAAATAACACAACGAGA
AATAATGAAACTGGCAGACAAATAAGTATAGACCGGGCGCACCAAGCGAT
ATCACCTAACAATTATGGTACTCTAAATAGCTCTGACTCAGACGCCGAAG
ATTTAGTCAATTACACAAGCCTAAAAGATGACAATGAGTATAATACCAAT
GCATCAAAAATACTCCCAAACAGTAGCATATGTATACATCACCGACGCCG
ACAACATCGGCAAAGAAGAATACCAAGTGTCTTTATTATTATAATCATTA
TCATAGAAATCGTAATCTTCATCATCGGAGTCACAGGGAACATCATGATC
GTGCTTACAATCCTTACAACAAAATCAATGCATTCAACACAGAACTTCTT
CGTCTTCAACTTAGCCATAACCGATCTTGTCACACTCGTTAATCTACCAA
TGAAAATCTGGCAGCAATTAGCACCATACCTGTTATTACCAGGATGGCCT
TTTGGTGAATTTTCATGCATTTATGTTGTTCCTATCTTCGATATTTTTCC
ATCTGTATCGATCTTAACTCTTGTGGCAATCTATATCGACCGATACCGAG
CAATAACGGCAACGTTGGCAACAGCAGTAAGTCTAAAATATATTATCCTA
CTTTTAGCTGCGAACTGGATCGGCAATTATCTAGTCGTCGGACTTCCTGT
GACTTTTGTCATGACGTATATCGCTCCATCACAGTGCATGGCTAATTTCA
CATCGGCATCGTTAAGACGTACGTATTTCACTTTACGGACAGTGTTACTA
TACGTGTTACCGTCAAGCatcatatttttttgtttcgtgcGTGTGAACAA
GGTGTTAGGAAACAGCATGCGTTTCCTGCAACGCTCAGTAACAGGGAAAT
CACAAGTGGTCAGActtaaaagacaaaaaagagTAATGACTATGTTTTTC
GTCATCTTCCTAACATTCGTAATTTGTTATTTCCCGTATAATACACTGAC
AATAGTATACCATTATGTTCCATCTTTAGGACAATATCCTGAACTTATTA
CAAGTTTTATGCACGTGGCTGCCATGTTAGGGATAGCTTACAGCGCATGT
AATTCTGTCATTTTATATCATCTAAGTAAAGCTTTCAGAGTGAAATTCCA
GAAATATTTACCATTCTTGAAATGTTTTACACGTTTGGAGAAAGAAGACA
CGATTGATAATCACGATCGCAGACATACCACTATTGAGGATTTGGATGAC
GGTGAAGAAACAAAAACTAATCGTCGATTTTCAGGAGCTAATTTATTCTC
AAGTAAAGGGGGTACTTTCAAGCGACGTTTTGGCCCTAAGAGGCCGCATC
ACCCGAACGGTGAGACTCAAGAGCATGAACTGTTAGAAAATAACAATATA
ACAAACCATGATTTATGAGCTGTATAACTTGTATTAATCTACGAATTTAT
GTTTTTAGTTATCTCTTGATCTCCATAAGCGCGCACTGCGCTCGCTTCTT
TAAAATCTAAGTTTCGagagaaaaaggaaaatgtCTACTCGTCCAATCAT
CGATTAGCTTGTATCATCCCGCCCAAACGGAACGATGCCTAACCGTAACA
AACCGAACTTCGCGTTATTTTTTTAGTCAGCGTAggagagtttggtacag
gctaatcATCGATGAGTACTCTCTCCCTTATTCTCAAGAGTGTGGTGAGG
CTGAAAGAAGCGATAACAACAAACGCTTATGGATGTCAG

Coding sequence (CDS) from alignment at scaffold_478:514486..516574

>TCONS_00068072 ID=TCONS_00068072|Name=TCONS_00068072|organism=Clytia hemisphaerica|type=CDS|length=1767bp|location=Sequence derived from alignment at scaffold_478:514486..516574 (Clytia hemisphaerica)
AGGTCTATTAtcttcatcatcattttcaattCAATCGTTGGATTTATCAG
CGCATCCGATCAATCAAAACCCCTCAACAATTCAATAATTAAAACTCACA
ACCATCAAAATAATAATTCTCAACCCATTGGAGCGTCCAAACTTGATGAC
CCAACTTTACCTGAAGCGTCTAACCTCGATAGTCCAACTTTAAATGGAGC
GTCTAAACTCGATAATCTAACTTTAAATGGAGTGTCTAAACTCGATAATC
CAACTTTAGATGAAACCTCTAGACTCGATGAACCAGCTTTATCTGAAACA
TCCAAACTCGATGATCCAACCTTACCTAACCTAAACaagttttctttaaa
caaaacaATGCTAGATAGAATCTGCAACGGTCAAAATAACACAACGAGAA
ATAATGAAACTGGCAGACAAATAAGTATAGACCGGGCGCACCAAGCGATA
TCACCTAACAATTATGGTACTCTAAATAGCTCTGACTCAGACGCCGAAGA
TTTAGTCAATTACACAAGCCTAAAAGATGACAATGAGTATAATACCAATG
CATCAAAAATACTCCCAAACAGTAGCATATGTATACATCACCGACGCCGA
CAACATCGGCAAAGAAGAATACCAAGTGTCTTTATTATTATAATCATTAT
CATAGAAATCGTAATCTTCATCATCGGAGTCACAGGGAACATCATGATCG
TGCTTACAATCCTTACAACAAAATCAATGCATTCAACACAGAACTTCTTC
GTCTTCAACTTAGCCATAACCGATCTTGTCACACTCGTTAATCTACCAAT
GAAAATCTGGCAGCAATTAGCACCATACCTGTTATTACCAGGATGGCCTT
TTGGTGAATTTTCATGCATTTATGTTGTTCCTATCTTCGATATTTTTCCA
TCTGTATCGATCTTAACTCTTGTGGCAATCTATATCGACCGATACCGAGC
AATAACGGCAACGTTGGCAACAGCAGTAAGTCTAAAATATATTATCCTAC
TTTTAGCTGCGAACTGGATCGGCAATTATCTAGTCGTCGGACTTCCTGTG
ACTTTTGTCATGACGTATATCGCTCCATCACAGTGCATGGCTAATTTCAC
ATCGGCATCGTTAAGACGTACGTATTTCACTTTACGGACAGTGTTACTAT
ACGTGTTACCGTCAAGCatcatatttttttgtttcgtgcGTGTGAACAAG
GTGTTAGGAAACAGCATGCGTTTCCTGCAACGCTCAGTAACAGGGAAATC
ACAAGTGGTCAGActtaaaagacaaaaaagagTAATGACTATGTTTTTCG
TCATCTTCCTAACATTCGTAATTTGTTATTTCCCGTATAATACACTGACA
ATAGTATACCATTATGTTCCATCTTTAGGACAATATCCTGAACTTATTAC
AAGTTTTATGCACGTGGCTGCCATGTTAGGGATAGCTTACAGCGCATGTA
ATTCTGTCATTTTATATCATCTAAGTAAAGCTTTCAGAGTGAAATTCCAG
AAATATTTACCATTCTTGAAATGTTTTACACGTTTGGAGAAAGAAGACAC
GATTGATAATCACGATCGCAGACATACCACTATTGAGGATTTGGATGACG
GTGAAGAAACAAAAACTAATCGTCGATTTTCAGGAGCTAATTTATTCTCA
AGTAAAGGGGGTACTTTCAAGCGACGTTTTGGCCCTAAGAGGCCGCATCA
CCCGAACGGTGAGACTCAAGAGCATGAACTGTTAGAAAATAACAATATAA
CAAACCATGATTTATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042499XLOC_042499Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068072-proteinTCONS_00068072-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068072-exon-scaffold_478-1491911889:514486..516574TCONS_00068072-exon-scaffold_478-1491911889:514486..516574Clytia hemisphaericaexon
TCONS_00068072-exon-scaffold_478-1510915933:514486..516574TCONS_00068072-exon-scaffold_478-1510915933:514486..516574Clytia hemisphaericaexon
TCONS_00068072-exon-scaffold_478-1575043694:514486..516574TCONS_00068072-exon-scaffold_478-1575043694:514486..516574Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_478supercontigscaffold_478:514486..516574 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0188711	0	0	0	0.0254488	0.02011	3.27535	3.54333	1.47892	1.83188	1.41481	1.35735	1.33036	1.10788	0	0.0229991	0.226664	0.333965	3.81148	2.79191	0.456142	0.640772	0.562569	0.6885	1.19541	0.958375	3.70028	2.59587	0.041891	0.0853606
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000276GPCR_Rhodpsn
IPR017452GPCR_Rhodpsn_7TM
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
Blast
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BLAST of TCONS_00068072 vs. Swiss-Prot (Human)
Match: SSR5 (Somatostatin receptor type 5 OS=Homo sapiens GN=SSTR5 PE=1 SV=3)

HSP 1 Score: 88.1965 bits (217), Expect = 1.097e-18
Identity = 84/320 (26.25%), Postives = 137/320 (42.81%), Query Frame = -2 
Query:  469 GVTGNIMIVLTILTTKSMHSTQNFFVFNLAITDLVTLVNLPMKIWQQLAPYLLLPGWPFGEFSCIYVVPIFDIFPSVSILTLVAIYIDRYRAITATLATAVSLKYIILLL--AANWIGNYLVVGLPVTFVMTYIAPSQCMANFTS-ASLRRTYFTLRTVLL-YVLPSSIIFFCFVR-VNKVLGNSMRFLQRSVTGKSQVVRLKRQKRVMTMFFVIFLTFVICYFPYNTLTIVYHYVPSLGQYPELITSFMHVAAMLGIAYSACNSVILYHLSKAFRVKFQKYLPFLKCFTRLEKEDTIDNHDRRHTTIEDLDDGEETKTN 1413
            G+ GN +++  +L    M +  N ++ NLA+ D++ ++ LP    Q  A +     WPFG   C  V+ +  +    S+  L  + +DRY A+   L++A   +  +  L  AA W+ + L + LP+           C A++     L    F + T +L +  P  +I  C++  V KV         R+   +   VR + +++V  M  V+ L F  C+ P+ T+ IV   V +L Q P     +  V  +L  A S  N V+   LS  FR  FQK L   K     + + T    DR     E          N
Sbjct:   54 GLGGNTLVIYVVLRFAKMKTVTNIYILNLAVADVLYMLGLPFLATQNAASF-----WPFGPVLCRLVMTLDGVNQFTSVFCLTVMSVDRYLAVVHPLSSARWRRPRVAKLASAAAWVLS-LCMSLPLLVFADVQEGGTCNASWPEPVGLWGAVFIIYTAVLGFFAPLLVICLCYLLIVVKV---------RAAGVRVGCVRRRSERKVTRMVLVVVLVFAGCWLPFFTVNIVNLAV-ALPQEPASAGLYFFV-VILSYANSCANPVLYGFLSDNFRQSFQKVLCLRKGSGAKDADATEPRPDRIRQQQEATPPAHRAAAN 356
The following BLAST results are available for this feature:
BLAST of TCONS_00068072 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SSR51.097e-1826.25Somatostatin receptor type 5 OS=Homo sapiens GN=SS... [more]
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