TCONS_00068072-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00068072-protein
Unique Name	TCONS_00068072-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	588

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00068072-protein ID=TCONS_00068072-protein|Name=TCONS_00068072-protein|organism=Clytia hemisphaerica|type=polypeptide|length=588bp
RSIIFIIIFNSIVGFISASDQSKPLNNSIIKTHNHQNNNSQPIGASKLDD
PTLPEASNLDSPTLNGASKLDNLTLNGVSKLDNPTLDETSRLDEPALSET
SKLDDPTLPNLNKFSLNKTMLDRICNGQNNTTRNNETGRQISIDRAHQAI
SPNNYGTLNSSDSDAEDLVNYTSLKDDNEYNTNASKILPNSSICIHHRRR
QHRQRRIPSVFIIIIIIIEIVIFIIGVTGNIMIVLTILTTKSMHSTQNFF
VFNLAITDLVTLVNLPMKIWQQLAPYLLLPGWPFGEFSCIYVVPIFDIFP
SVSILTLVAIYIDRYRAITATLATAVSLKYIILLLAANWIGNYLVVGLPV
TFVMTYIAPSQCMANFTSASLRRTYFTLRTVLLYVLPSSIIFFCFVRVNK
VLGNSMRFLQRSVTGKSQVVRLKRQKRVMTMFFVIFLTFVICYFPYNTLT
IVYHYVPSLGQYPELITSFMHVAAMLGIAYSACNSVILYHLSKAFRVKFQ
KYLPFLKCFTRLEKEDTIDNHDRRHTTIEDLDDGEETKTNRRFSGANLFS
SKGGTFKRRFGPKRPHHPNGETQEHELLENNNITNHDL

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_042499	XLOC_042499	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00068072	TCONS_00068072	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000276	GPCR_Rhodpsn
IPR017452	GPCR_Rhodpsn_7TM

Vocabulary: **Biological Process**
Term	Definition
GO:0007186	G-protein coupled receptor signaling pathway

Vocabulary: **Molecular Function**
Term	Definition
GO:0004930	G-protein coupled receptor activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007186	G-protein coupled receptor signaling pathway
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0004930	G-protein coupled receptor activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000276	G protein-coupled receptor, rhodopsin-like	PRINTS	PR00237	GPCRRHODOPSN	coord: 376..399 score: 18.48 coord: 470..496 score: 24.32 coord: 428..452 score: 23.04 coord: 247..268 score: 30.38 coord: 296..318 score: 34.77 coord: 214..238 score: 21.48
IPR000276	G protein-coupled receptor, rhodopsin-like	PFAM	PF00001	7tm_1	coord: 229..484 e-value: 3.1E-33 score: 115.1
None	No IPR available	GENE3D	1.20.1070.10		coord: 181..546 e-value: 7.8E-55 score: 185.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 551..588
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 27..109
None	No IPR available	SUPERFAMILY	81321	Family A G protein-coupled receptor-like	coord: 184..521
IPR017452	GPCR, rhodopsin-like, 7TM	PROSITE	PS50262	G_PROTEIN_RECEP_F1_2	coord: 229..488 score: 34.153

Blast

[Close]

BLAST of TCONS_00068072-protein vs. Swiss-Prot (Human)
Match: MTR1L (Melatonin-related receptor OS=Homo sapiens GN=GPR50 PE=1 SV=3)

HSP 1 Score: 92.8189 bits (229), Expect = 1.038e-19
Identity = 85/305 (27.87%), Postives = 147/305 (48.20%), Query Frame = 0

Query:  204 QRRIPSVFIIIIIIIEIVIFIIGVTGNIMIVLTILTTKSMHSTQNFFVFNLAITD-LVTLVNLPMKIWQQLAPYLLLPGWPFGEFSCIYVVPIFDIFPSVSILTLVAIYIDRYRAITATLATA--VSLKYIILLLAANWIGNYLVVGLPVTFVMTYIAPSQ---CMANFTSASLRRTYFTLRTVLL-YVLPSSIIFFCFVRV-NKVLGNSMRFLQRSVTGKSQVVRLKRQKRVMTMFFVIFLTFVICYFPYNTLTIVYHYVPSLGQYPELITSFMHVAAMLGIAYSAC-NSVILYHLSKAFRVKF 499
            Q   P   II +    ++  ++ + GN M++L +   K + ++ N FV +L++ D LV +   P+ +       + + GW   +  C  V  I  +    SI  +VAI I+RY  I  +L      S++   + L   WI   L V LP  ++ T     +   C+ N+    L    FT+  V + +VLP  I+ FC+VR+  KVL        R   G++   +L   +  +TM FVIFL F +C+ P N LT++    P   +    I +++++AA     +++C N+VI   L++ FR ++
Sbjct:   20 QPEYPPALIIFMFCAMVITIVVDLIGNSMVILAVTKNKKLRNSGNIFVVSLSVADMLVAIYPYPLMLHA-----MSIGGWDLSQLQCQMVGFITGLSVVGSIFNIVAIAINRYCYICHSLQYERIFSVRNTCIYLVITWIMTVLAV-LPNMYIGTIEYDPRTYTCIFNY----LNNPVFTVTIVCIHFVLPLLIVGFCYVRIWTKVLA------ARDPAGQNPDNQLAEVRNFLTM-FVIFLLFAVCWCPINVLTVLVAVSPK--EMAGKIPNWLYLAAYFIAYFNSCLNAVIYGLLNENFRREY 305

The following BLAST results are available for this feature:

BLAST of TCONS_00068072-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00068072-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
MTR1L	1.038e-19	27.87	Melatonin-related receptor OS=Homo sapiens GN=GPR5...	[more]

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TCONS_00068072-protein (polypeptide) - C. hemisphaerica