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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067243 ID=TCONS_00067243|Name=TCONS_00067243|organism=Clytia hemisphaerica|type=transcript|length=2529bp AAATACCTGACTCAAAATCATTTGGTATTGTTTCATTTCAGcgataaaaa aagaacagaaaaacaagaaattatttaaaaaaacagcTACAATGGCCAGC ATCAATTGTGACAACATCGTTCCGAACGAAGAGCGAAATGGAAAATTAGT TCCGTTCGATTTCCATGAAAATGAATGTGACGTCATTATTAAGACAAAAG ACAAAGAAGTTCAGTTGCCATCCAGTTTCTTAGAAATGGTATCTAGTCCA ATGGATTTCAATAACAACGTAAATAATCTTTTCGACGTTGATGTTTGTGC TGAAAGTGTAACCAAAGCGTTGTCATTTTATCACCCTAAGGATTGGACCA ACAAAATTGACTgtTCGGAGTTGGATGATTTACTCTTAGTTACAAATACG CTTAAGCTAAAATCATTCAAATTACATTTAATCGAACATATGAAGACAGA ATACGTATCAAAGTCAAAGCAATTTGATGAGAATTTACTGCAagtttttc atgctgctcaaaAGTATGAATTGACTACATTAATTGAAACAATTAGATTA AGGTCTCTGCGCATCTTAGATTTGGCTAGAAGCCAACGTACATTATACCT CGCTGGAGAAAATATATCGATGTGAAATTTTAGAGACCTCTGTATATGAA CATGTCAATATCAACAATGATCCGGAGTTGCTTGCAATATTTCACCTCTT CAAATTAATTATTCACAAATTTCAAAACCCCGACTTGGCTTCTAAAACAG ATTTCTTAACCCACCAGATTCATGAGCACTTTATTGATTATGAGTCAATT TCCTACAAAAAGGGTTTTCCAAATTGTGTCGTCTTGGACGTTgagaacaa agaaattcatgTCAGTTCGTATTTACTCATAAACAACTCTCCTGTATTCA AAGCAATGTTGAGTTCGACAAATTTCAAAGAAGGTCAAAACAGAAGGATT GAACTTCCTGGCAAGAAATTCAATGAAGTTGTCTACTTCCTTCAATTTCT ACACACACTTCAAGATATTAAAGATGACACTAATATTTGGGCTCTGGCAC CTTTGTGTCAAGAATATCAAGTGGATTGGCTCTCCAACAAAATACAGTCC TTCATACGAAATTGTGCTAGAAANATACCTCGCTGGAGAAAATATATCGA TGTGAAATTTTAGAGACCTCTGTATATGAACATGTCAATATCAACAATGA TCCGGAGTTGCTTGCAATATTTCACCTCTTCAAATTAATTATTCACAAAT TTCAAAACCCCGACTTGGCTTCTAAAACAGATTTCTTAACCCACCAGATT CATGAGCACTTTATTGATTATGAGTCAATTTCCTACAAAAAGGGTTTTCC AAATTGTGTCGTCTTGGACGTTgagaacaaagaaattcatgTCAGTTCGT ATTTACTCATAAACAACTCTCCTGTATTCAAAGCAATGTTGAGTTCGACA AATTTCAAAGAAGGTCAAAACAGAAGGATTGAACTTCCTGGCAAGAAATT CAATGAAGTTGTCTACTTCCTTCAATTTCTACACACACTTCAAGATATTA AAGATGACACTAATATTTGGGCTCTGGCACCTTTGTGTCAAGAATATCAA GTGGATTGGCTCTCCAACAAAATAGAGTCCTTCATACGAAATTGTGCTAC AAACAGAACAAAGACAATTCTCAACTATTTAGTGTTAGCTGAAGATATGC ATTTTGGTATTGAAGTAGAAAggagtttggtttctaaactcTTAAGAGGG TTCCAAAATATCAGTATGTGCTTGGAATTTCTCCTACTCAGCCGTCGAAT GCAAGTTTGGATTGCAAGAAGAAAATTAGCTGATTCTTTGAAGAAGTTTC TGATTGATCCGTACTTTGATACTCTTCCCAGGTATGGCAAGCAAACAACC CGAGAGAAAAAAGAGGCTGGGATAAAGAAATATAAAGCAGTTGATGCTGA CGTTGTTTCCATATTTCATGATCTAGATCAACCCAAAATGGAGCTTATAA ATGCATAATGGCATACATAATCACAATTTTTTGTTTGTGCCAGATTCTAT TATATTAACTAAAagttctgttttatttaccatgcattgggcttttccag aaaaaaaccgcacaccccctgttgaggaggtctatCCCTTtatggctgga aatgctgtaaaccccctggaattccaggaaattttagatttaaacCCCTC TGAAATTCTTAaatttagtaggatttaaaaagctaccacatggaattcca gttatttttgacagatttttgtatctccctatggaattccaccacatata tcaaaccttacccccttggaacgaaagtggacctcctcaacaggggtttt ttttctggaaaaacccatTCTTAAAATGATTCTgtccctttttttgaaaa tactttttattAAATCATTGtgatcattttttaaataaaaaacttatTGC CTCATTTCTTGccttttttggacattttttaaaattgatgtttttgtttt ttgtccATAACTTCTGAACTAATAaagca Run BLAST on NCBI transcript from alignment at scaffold_466:478054..481276- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067243 ID=TCONS_00067243|Name=TCONS_00067243|organism=Clytia hemisphaerica|type=transcript|length=3223bp|location=Sequence derived from alignment at scaffold_466:478054..481276- (Clytia hemisphaerica) AAATACCTGACTCAAAATCATTTGGTATTGTTTCATTTCAGCGATAAAAA
AAGAACAGAAAAACAAGAAATTATTTAAAAAAACAGCTACAATGGCCAGC
ATCAATTGTGACAACATCGTTCCGAACGAAGAGCGAAATGGAAAATTAGT
TCCGTTCGATTTCCATGAAAATGAATGTGACGTCATTATTAAGACAAAAG
ACAAAGAAGTTCAGTTGCCATCCAGTTTCTTAGAAATGGTATCTAGTCCA
ATGGATTTCAATAACAACGTAAATAATCTTTTCGACGTTGATGTTTGTGC
TGAAAGTGTAACCAAAGCGTTGTCATTTTATCACCCTAAGGATTGGACCA
ACAAAATTGACTGTAAGTTTCGACTCTTTTCGCATTTTGTAAGTATCAAT
CAAAAGCCATACCGTATTGCTTTGAATAAACGCCCCGGGTGTGTTTAAAG
GTGGCGTTCATCGAAAATCTTTCCTTAAATTAGTAGCTACAAGATAGGCC
GATTCGCGAAATTCTATCCACTCGAAAAATTTTGATCTTCGATTCGCGAA
AAAAAGTCCACGTGAAAATTAAAGATCAGCGACTTTAAGGTAGTACCAAG
AAGGCTATTTTAGTTTAAAGCTATAGAAGGTGCCAAGAGATTCTCATATT
TTTATTTCTCATACAAATATGTTTTAATACTTTGGATTTTTTGTATTTTT
AGGTTCGGAGTTGGATGATTTACTCTTAGTTACAAATACGCTTAAGCTAA
AATCATTCAAATTACATTTAATCGAACATATGAAGACAGAATACGTATCA
AAGTCAAAGCAATTTGATGAGAATTTACTGCAAGTTTTTCATGCTGCTCA
AAAGTATGAATTGACTACATTAATTGAAACAATTAGATTAAGGTCTCTGC
GCATCTTAGATTTGGCTAGAAGCCAACGTACATTATACCTCGCTGGAGAA
AATATATCGATGTGAAATTTTAGAGACCTCTGTATATGAACATGTCAATA
TCAACAATGATCCGGAGTTGCTTGCAATATTTCACCTCTTCAAATTAATT
ATTCACAAATTTCAAAACCCCGACTTGGCTTCTAAAACAGATTTCTTAAC
CCACCAGATTCATGAGCACTTTATTGATTATGAGTCAATTTCCTACAAAA
AGGGTTTTCCAAATTGTGTCGTCTTGGACGTTGAGAACAAAGAAATTCAT
GTCAGTTCGTATTTACTCATAAACAACTCTCCTGTATTCAAAGCAATGTT
GAGTTCGACAAATTTCAAAGAAGGTCAAAACAGAAGGATTGAACTTCCTG
GCAAGAAATTCAATGAAGTTGTCTACTTCCTTCAATTTCTACACACACTT
CAAGATATTAAAGGTATTTTTGTGTACAATACTCTTGAAGTAACTTATCG
TTTTTTGAACATTTCCCGACCTTTTTTCGACCTTCACAAACAAATTACTT
CTATAGTGTCTTTTCTAATCATCAATGAATTTAGATTTTCAAAATTTCCT
TCTTGTTTTTTACTGTCCGAATTTTCCTACCCATTTGTAGATGACACTAA
TATTTGGGCTCTGGCACCTTTGTGTCAAGAATATCAAGTGGATTGGCTCT
CCAACAAAATACAGTCCTTCATACGAAATTGTGCTAGAAANATACCTCGC
TGGAGAAAATATATCGATGTGAAATTTTAGAGACCTCTGTATATGAACAT
GTCAATATCAACAATGATCCGGAGTTGCTTGCAATATTTCACCTCTTCAA
ATTAATTATTCACAAATTTCAAAACCCCGACTTGGCTTCTAAAACAGATT
TCTTAACCCACCAGATTCATGAGCACTTTATTGATTATGAGTCAATTTCC
TACAAAAAGGGTTTTCCAAATTGTGTCGTCTTGGACGTTGAGAACAAAGA
AATTCATGTCAGTTCGTATTTACTCATAAACAACTCTCCTGTATTCAAAG
CAATGTTGAGTTCGACAAATTTCAAAGAAGGTCAAAACAGAAGGATTGAA
CTTCCTGGCAAGAAATTCAATGAAGTTGTCTACTTCCTTCAATTTCTACA
CACACTTCAAGATATTAAAGGTATTTTTGTGTACAATACTCTTGAAGTAA
CTTATCGTTTTTTGAACATTTCCCGACCTTTTTTCGACCTTCACAAACAA
ATTACTTCTATAGTGTCTTTTCTAATCATCAATGAATTTAGATTTTCAAA
ATTTCCTTCTTGTTTTTTACTGTCCGAATTTTCCTACCCATTTGTAGATG
ACACTAATATTTGGGCTCTGGCACCTTTGTGTCAAGAATATCAAGTGGAT
TGGCTCTCCAACAAAATAGAGTCCTTCATACGAAATTGTGCTACAAACAG
AACAAAGACAATTCTCAACTATTTAGTGTTAGCTGAAGATATGCATTTTG
GTATTGAAGTAGAAAGGAGTTTGGTTTCTAAACTCTTAAGAGGGTTCCAA
AATATCAGTATGTGCTTGGAATTTCTCCTACTCAGCCGTCGAATGCAAGT
TTGGATTGCAAGAAGAAAATTAGCTGATTCTTTGAAGAAGTTTCTGATTG
ATCCGTACTTTGATACTCTTCCCAGGTATGGCAAGCAAACAACCCGAGAG
AAAAAAGAGGCTGGGATAAAGAAATATAAAGCAGTTGATGCTGACGTTGT
TTCCATATTTCATGATCTAGATCAACCCAAAATGGAGCTTATAAATGCAT
AATGGCATACATAATCACAATTTTTTGTTTGTGCCAGATTCTATTATATT
AACTAAAAGTTCTGTTTTATTTACCATGCATTGGGCTTTTCCAGAAAAAA
ACCGCACACCCCCTGTTGAGGAGGTCTATCCCTTTATGGCTGGAAATGCT
GTAAACCCCCTGGAATTCCAGGAAATTTTAGATTTAAACCCCTCTGAAAT
TCTTAAATTTAGTAGGATTTAAAAAGCTACCACATGGAATTCCAGTTATT
TTTGACAGATTTTTGTATCTCCCTATGGAATTCCACCACATATATCAAAC
CTTACCCCCTTGGAACGAAAGTGGACCTCCTCAACAGGGGTTTTTTTTCT
GGAAAAACCCATTCTTAAAATGATTCTGTCCCTTTTTTTGAAAATACTTT
TTATTAAATCATTGTGATCATTTTTTAAATAAAAAACTTATTGCCTCATT
TCTTGCCTTTTTTGGACATTTTTTAAAATTGATGTTTTTGTTTTTTGTCC
ATAACTTCTGAACTAATAAAGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00067243-exon-scaffold_466-1575043694:480915..481276 | TCONS_00067243-exon-scaffold_466-1575043694:480915..481276 | Clytia hemisphaerica | exon |
TCONS_00067243-exon-scaffold_466-1575043694:479914..480574 | TCONS_00067243-exon-scaffold_466-1575043694:479914..480574 | Clytia hemisphaerica | exon |
TCONS_00067243-exon-scaffold_466-1575043694:479207..479736 | TCONS_00067243-exon-scaffold_466-1575043694:479207..479736 | Clytia hemisphaerica | exon |
TCONS_00067243-exon-scaffold_466-1575043694:478054..479029 | TCONS_00067243-exon-scaffold_466-1575043694:478054..479029 | Clytia hemisphaerica | exon |
TCONS_00067243-exon-scaffold_466-1510915933:480915..481276 | TCONS_00067243-exon-scaffold_466-1510915933:480915..481276 | Clytia hemisphaerica | exon |
TCONS_00067243-exon-scaffold_466-1510915933:479914..480574 | TCONS_00067243-exon-scaffold_466-1510915933:479914..480574 | Clytia hemisphaerica | exon |
TCONS_00067243-exon-scaffold_466-1510915933:479207..479736 | TCONS_00067243-exon-scaffold_466-1510915933:479207..479736 | Clytia hemisphaerica | exon |
TCONS_00067243-exon-scaffold_466-1510915933:478054..479029 | TCONS_00067243-exon-scaffold_466-1510915933:478054..479029 | Clytia hemisphaerica | exon |
TCONS_00067243-exon-scaffold_466-1491911889:480915..481276 | TCONS_00067243-exon-scaffold_466-1491911889:480915..481276 | Clytia hemisphaerica | exon |
TCONS_00067243-exon-scaffold_466-1491911889:479914..480574 | TCONS_00067243-exon-scaffold_466-1491911889:479914..480574 | Clytia hemisphaerica | exon |
TCONS_00067243-exon-scaffold_466-1491911889:479207..479736 | TCONS_00067243-exon-scaffold_466-1491911889:479207..479736 | Clytia hemisphaerica | exon |
TCONS_00067243-exon-scaffold_466-1491911889:478054..479029 | TCONS_00067243-exon-scaffold_466-1491911889:478054..479029 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_466 | supercontig | scaffold_466:478054..481276 - |
Blast
The following BLAST results are available for this feature:
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